genome.fa.s1.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  110  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32964076--32964615	258	2.1	262	93	2	935	46	2	5	45	1.40
32964497--32964535	18	2.2	18	86	9	53	48	0	10	41	1.37
32964487--32964616	26	5.0	26	77	14	142	46	3	5	45	1.41
32970023--32970179	66	2.4	66	84	2	199	44	15	24	15	1.85
32970165--32970207	21	2.0	21	95	0	77	30	23	46	0	1.52
32970173--32970217	21	2.1	21	91	0	72	33	22	44	0	1.53
32970518--32970848	43	7.7	43	86	1	450	25	26	30	17	1.97
32970518--32970889	129	2.9	130	81	7	479	24	26	29	19	1.98
32971330--32971384	22	2.5	22	80	14	60	40	0	5	54	1.23
32971330--32971384	21	2.5	23	80	14	62	40	0	5	54	1.23
32971329--32971384	23	2.4	24	77	17	64	41	0	5	53	1.24
32974328--32974387	10	6.6	9	74	16	52	60	0	1	38	1.07
32974853--32974903	9	5.6	9	73	13	50	31	1	1	64	1.15
32974931--32974993	27	2.3	28	78	13	69	36	1	3	58	1.23
32978580--32978626	23	2.1	22	84	4	58	21	2	2	74	1.03
32979169--32979216	15	3.0	16	78	6	53	56	0	4	39	1.19
32979969--32980063	47	2.0	46	84	6	120	44	1	3	51	1.24
32980027--32980078	20	2.7	20	80	17	65	38	0	5	55	1.24
32980027--32980079	19	2.7	21	80	14	67	37	0	5	56	1.23
32989987--32990080	42	2.2	42	90	0	143	38	17	12	31	1.87
33000918--33000946	8	3.6	8	100	0	58	0	13	10	75	1.04
33002724--33002755	3	10.7	3	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33014088--33014137	22	2.2	22	85	3	64	8	16	18	58	1.62
33021617--33021731	57	2.0	57	98	0	221	24	31	22	21	1.98
33032928--33032970	4	10.8	4	84	0	59	18	2	25	53	1.56
33032928--33032970	12	3.6	12	93	0	68	18	2	25	53	1.56
33032968--33032999	2	16.0	2	100	0	64	0	0	50	50	1.00
33038326--33038536	59	3.5	60	77	8	214	29	15	17	37	1.91
33038434--33038638	103	2.0	103	86	4	290	31	14	15	39	1.87
33038545--33038776	57	3.9	60	79	8	226	26	18	16	37	1.93
33038299--33038753	221	2.1	218	84	6	589	27	16	17	38	1.90
33038566--33038793	118	1.9	117	87	4	334	25	20	17	36	1.94
33038537--33038789	59	4.3	59	74	10	228	27	18	16	37	1.92
33039598--33039689	30	3.1	30	90	0	130	27	6	4	61	1.39
33039641--33039695	17	3.5	17	70	27	57	25	10	3	60	1.47
33040503--33041185	59	11.5	59	74	10	475	38	15	18	27	1.91
33040503--33041181	119	5.7	117	76	9	473	38	15	18	27	1.91
33040530--33041185	178	3.7	177	79	7	571	39	15	17	27	1.90
33040649--33041185	179	3.0	176	80	7	539	39	14	18	27	1.90
33059160--33059305	71	2.1	70	96	1	265	47	13	15	23	1.81
33073746--33073854	13	8.2	13	78	4	119	37	22	22	17	1.94
33073749--33073848	27	3.7	27	84	5	132	34	23	25	18	1.96
33073855--33073898	21	2.2	20	83	4	52	29	34	22	13	1.93
33073949--33073994	21	2.1	22	92	4	76	21	0	34	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33074463--33074497	10	3.7	10	85	14	56	80	0	20	0	0.72
33079931--33079972	3	14.3	3	95	5	77	69	0	0	30	0.89
33081024--33081104	20	4.1	20	76	6	83	37	23	22	17	1.94
33081041--33081104	13	4.8	13	76	3	65	35	25	21	17	1.95
33081094--33081142	21	2.3	21	85	0	62	26	30	28	14	1.95
33081113--33081160	10	4.7	10	92	2	78	20	31	31	16	1.95
33081725--33081760	10	3.7	10	92	7	65	80	0	19	0	0.71
33082404--33082485	34	2.4	34	85	2	101	37	2	3	56	1.30
33082404--33082490	17	5.0	17	77	2	84	37	2	3	56	1.29
33084369--33084478	30	3.7	30	75	9	84	39	21	3	35	1.71
33084412--33084578	59	2.8	58	76	9	178	34	22	6	37	1.80
33084530--33084638	29	3.8	29	80	7	123	31	23	11	33	1.90
33084530--33084625	29	3.3	30	84	11	128	34	21	10	33	1.88
33084530--33084651	58	2.1	58	81	6	140	32	23	11	31	1.90
33089249--33089294	23	2.0	23	100	0	92	43	13	4	39	1.63
33093591--33093840	124	2.0	124	100	0	500	32	22	12	33	1.91
33095115--33095147	14	2.4	14	90	10	50	30	33	0	36	1.58
33097735--33097771	16	2.3	16	86	13	58	59	0	5	35	1.20
33098073--33098121	12	3.9	12	82	10	62	44	0	12	42	1.41
33104266--33104333	34	2.0	34	100	0	136	44	17	11	26	1.83
33106699--33106842	73	1.9	74	92	4	245	37	11	20	29	1.89
33120759--33121051	85	3.5	83	79	6	293	35	5	10	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33121814--33122237	176	2.4	178	82	7	486	26	16	16	40	1.90
33121882--33122235	60	6.0	60	75	9	271	25	16	16	40	1.90
33125623--33125666	21	2.1	21	83	8	54	11	27	2	59	1.44
33130029--33130088	31	1.9	31	93	0	102	43	3	6	46	1.46
33130424--33130471	18	2.6	18	83	12	53	50	4	4	41	1.41
33133180--33133227	23	2.0	23	84	11	62	18	12	0	68	1.20
33137041--33137125	41	2.1	41	86	8	120	40	21	16	22	1.91
33142603--33142642	7	5.7	7	93	0	62	35	27	22	15	1.94
33142602--33142642	21	2.0	21	95	0	73	36	26	21	14	1.93
33149816--33149875	7	8.7	7	79	3	59	35	21	23	20	1.96
33149829--33149879	14	3.6	14	89	0	75	29	19	27	23	1.98
33149816--33149875	21	2.9	21	90	2	86	35	21	23	20	1.96
33149829--33149879	7	7.3	7	88	0	66	29	19	27	23	1.98
33151001--33151038	18	2.1	18	95	0	67	47	18	5	28	1.70
33165776--33165869	41	2.3	41	92	3	154	28	7	26	37	1.83
33168077--33168169	30	3.1	30	76	6	73	35	10	16	37	1.83
33171377--33171402	2	13.0	2	100	0	52	50	0	0	50	1.00
33171544--33171578	17	2.1	17	94	0	61	45	2	0	51	1.16
33176763--33177184	41	10.3	41	80	7	314	26	24	26	22	2.00
33176806--33177126	122	2.6	120	87	5	437	25	25	27	21	1.99
33176758--33177184	164	2.6	163	79	9	449	26	24	26	22	2.00
33177310--33177455	44	3.3	44	84	3	186	13	47	9	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33179577--33179750	23	7.5	23	78	10	158	43	21	23	11	1.85
33179577--33179726	69	2.1	67	87	11	205	44	20	22	12	1.84
33182502--33183979	112	13.9	109	71	17	1087	46	2	4	46	1.37
33182612--33182689	32	2.4	34	75	16	83	44	1	2	51	1.23
33182545--33184027	161	9.3	161	84	10	1582	46	2	4	46	1.36
33182561--33184096	18	87.3	18	64	19	364	46	2	4	46	1.35
33182875--33183020	48	3.0	48	94	2	265	50	0	4	45	1.26
33182916--33183337	160	2.6	161	96	1	785	47	2	4	45	1.34
33182545--33183706	369	3.1	371	92	3	1859	46	2	4	46	1.35
33182653--33183020	49	7.2	49	83	10	461	47	1	4	46	1.32
33183444--33184026	49	11.1	49	68	22	260	46	2	4	46	1.37
33183458--33183729	8	30.9	9	64	22	59	47	2	3	47	1.32
33183950--33184075	65	2.0	64	95	1	225	50	0	3	46	1.20
33184125--33184218	8	11.8	8	71	22	65	43	1	3	52	1.24
33184148--33184218	30	2.4	30	88	9	101	43	0	2	53	1.15
33189724--33189846	64	1.9	64	93	0	210	44	16	26	13	1.83
33189864--33189904	21	2.0	21	95	0	73	31	24	43	0	1.54
33190200--33190306	43	2.5	43	90	0	169	29	23	27	19	1.98
33190200--33190322	43	2.9	42	84	7	149	26	23	26	22	2.00
33193585--33193660	31	2.5	31	84	4	100	40	3	0	55	1.18
33194686--33194725	2	20.5	2	94	5	73	0	50	0	50	1.00
33200902--33200986	42	2.0	42	95	0	152	36	15	16	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33204804--33204868	28	2.3	29	81	7	80	56	3	3	36	1.30
33206475--33206508	18	2.0	18	88	11	54	29	11	17	41	1.85
33206664--33206702	19	2.1	19	85	4	53	53	0	0	46	1.00
33206705--33206775	17	4.1	17	73	10	63	66	1	0	32	1.01
33207550--33207599	20	2.5	19	81	15	57	56	12	0	32	1.36
33207578--33207633	26	2.1	26	83	3	67	51	3	1	42	1.29
33225248--33225314	31	2.2	31	91	0	98	56	0	4	38	1.19
33225255--33225318	31	2.1	31	100	0	128	51	0	6	42	1.27
33225592--33225644	25	2.2	23	90	6	79	54	1	0	43	1.11
33225581--33225643	21	2.9	22	86	6	76	53	3	0	42	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126