genome.fa.s1.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  35  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10650276--10650323	21	2.3	21	85	7	62	31	10	31	27	1.90
10650712--10650759	15	3.3	15	88	5	80	25	16	10	47	1.78
10654220--10654291	31	2.3	30	79	11	83	36	9	11	43	1.73
10654555--10654639	38	2.3	38	83	4	102	42	16	16	24	1.88
10654695--10654846	72	2.1	72	82	4	182	39	13	21	25	1.90
10654559--10654847	35	8.3	35	68	20	124	40	14	20	24	1.90
10664502--10664530	3	9.7	3	100	0	58	34	65	0	0	0.93
10664529--10664554	3	8.7	3	100	0	52	34	34	0	30	1.58
10666982--10667026	20	2.2	20	84	7	56	31	15	2	51	1.56
10672816--10672852	18	2.0	19	89	5	58	54	8	0	37	1.30
10674683--10674724	17	2.4	18	80	15	52	23	23	0	52	1.47
10675744--10675784	18	2.3	18	86	0	55	46	0	0	53	1.00
10675751--10675793	18	2.4	18	84	0	59	48	0	0	51	1.00
10685081--10685241	85	1.9	86	85	3	227	31	20	18	29	1.96
10687210--10687697	108	4.5	107	85	3	568	25	19	20	34	1.96
10687437--10687583	34	4.1	34	69	14	109	24	22	21	31	1.98
10688552--10688601	26	1.9	26	95	0	91	46	4	10	40	1.56
10689653--10689686	15	2.3	15	90	10	52	23	2	2	70	1.15
10693007--10693115	52	2.1	52	81	3	121	51	10	2	35	1.50
10692867--10693656	151	5.4	146	83	9	942	44	9	3	43	1.52
10693323--10693543	51	4.5	50	72	14	163	46	7	2	43	1.44
10693410--10693656	135	1.9	132	87	3	347	44	8	3	44	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10693509--10693551	19	2.3	18	88	4	59	51	6	2	39	1.42
10694092--10694141	3	17.0	3	95	4	93	66	0	0	34	0.92
10695903--10695974	21	3.4	21	81	7	76	25	11	29	34	1.90
10697743--10697777	12	2.9	12	95	0	61	25	48	5	20	1.71
10698573--10698617	21	2.1	21	91	0	72	22	17	26	33	1.96
10698842--10698871	11	2.7	11	94	0	51	73	0	26	0	0.84
10703552--10703579	3	9.3	3	100	0	56	32	0	35	32	1.58
10703722--10703750	2	14.5	2	100	0	58	51	0	48	0	1.00
10706098--10706131	18	1.9	18	88	5	52	61	0	0	38	0.96
10708505--10708568	2	32.0	2	100	0	128	50	0	0	50	1.00
10714226--10714396	60	2.9	59	86	1	236	22	17	12	47	1.81
10718637--10718705	22	3.1	21	74	12	57	34	0	4	60	1.16
10724339--10724386	2	25.5	2	87	12	75	50	0	0	50	1.00
10732598--10732702	44	2.4	44	88	0	156	36	16	15	32	1.90
10736234--10736268	2	17.5	2	100	0	70	48	0	0	51	1.00
10747482--10747517	18	2.0	18	100	0	72	16	27	0	55	1.42
10748575--10748709	52	2.6	52	95	0	234	34	23	15	25	1.94
10749352--10749380	13	2.2	13	100	0	58	51	6	0	41	1.28
10749711--10749743	16	2.1	16	94	0	57	24	12	3	60	1.46
10755895--10755942	18	2.7	18	80	0	60	25	22	45	6	1.75
10755975--10756039	11	5.6	12	72	16	57	16	21	41	20	1.90
10756713--10757123	49	8.4	48	70	14	268	17	25	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10756713--10757123	99	4.2	98	87	2	567	17	25	19	37	1.93
10763854--10763882	9	3.2	9	100	0	58	48	0	0	51	1.00
10764711--10764744	18	1.9	18	88	5	52	35	0	5	58	1.22
10770825--10770880	26	2.1	27	81	18	66	57	1	1	39	1.20
10771636--10771724	36	2.5	36	83	3	99	48	12	17	21	1.80
10771722--10771812	46	2.0	46	82	4	112	45	16	17	20	1.86
10771821--10772103	75	3.8	75	84	0	316	45	16	17	19	1.85
10771768--10772023	111	2.3	111	79	6	279	44	15	19	19	1.87
10772055--10772130	36	2.1	36	82	4	91	53	14	11	19	1.71
10773053--10773130	26	3.0	26	72	20	74	65	1	0	33	1.01
10782081--10782141	30	1.9	32	87	9	90	60	0	0	39	0.97
10782095--10782138	22	2.0	23	83	12	58	68	0	0	31	0.90
10784238--10784302	31	2.1	31	97	0	121	0	30	7	61	1.24
10792511--10792542	12	2.5	13	95	5	57	68	0	0	31	0.90
10794185--10794261	12	6.7	12	71	16	65	70	18	3	7	1.28
10794173--10794245	21	3.2	24	74	18	75	71	15	5	8	1.29
10794201--10794269	36	1.9	36	91	5	113	66	18	7	7	1.39
10794191--10794259	24	2.9	24	87	6	97	69	18	4	7	1.29
10794199--10794261	12	5.2	12	81	7	83	68	19	4	7	1.33
10794274--10794391	21	5.7	20	84	8	130	66	21	5	6	1.37
10794297--10794388	40	2.2	40	84	7	123	66	21	6	5	1.36
10796302--10796387	36	2.4	36	82	0	91	30	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10796332--10796429	36	2.7	35	75	6	90	32	27	16	23	1.96
10797248--10797299	20	2.4	20	81	12	59	36	23	1	38	1.66
10805058--10805082	12	2.1	12	100	0	50	36	32	24	8	1.84
10820311--10820336	4	6.5	4	100	0	52	23	0	0	76	0.78
10820295--10820347	12	4.8	12	71	17	51	22	1	0	75	0.90
10820313--10820489	59	3.0	57	81	15	186	45	0	1	53	1.12
10820313--10820484	63	2.9	62	85	12	220	44	0	1	54	1.12
10820434--10820466	14	2.3	15	85	15	52	30	0	0	69	0.88
10820434--10820467	17	2.0	17	88	0	50	29	0	0	70	0.87
10824571--10824619	18	2.7	17	84	9	53	81	2	10	6	0.94
10824599--10824653	20	2.6	20	82	8	65	76	1	21	0	0.88
10824610--10824649	14	2.9	15	86	13	52	75	0	25	0	0.81
10825559--10827286	80	21.6	80	94	1	2984	32	24	18	24	1.97
10827054--10827721	79	8.4	80	88	3	736	32	24	18	24	1.97
10828256--10828417	59	2.7	58	84	12	199	43	0	1	53	1.16
10828245--10828421	63	2.9	62	86	8	238	43	0	1	54	1.14
10831922--10831961	5	8.0	5	88	0	53	52	0	22	25	1.47
10833106--10833145	14	2.9	14	82	10	55	65	7	7	20	1.43
10833270--10833424	56	2.7	57	81	5	179	35	2	25	36	1.70
10833270--10833470	29	7.0	28	75	10	131	34	2	26	35	1.72
10834333--10834370	18	2.1	18	85	9	51	21	15	7	55	1.66
10835217--10835303	6	14.7	6	76	7	79	58	2	1	37	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10835202--10835321	35	3.4	34	86	5	159	58	2	2	36	1.25
10835202--10835323	53	2.3	53	91	1	192	58	2	2	36	1.25
10835217--10835321	6	17.8	6	74	11	56	60	2	0	36	1.18
10835202--10835323	18	6.9	18	88	4	160	58	2	2	36	1.25
10835885--10835915	15	2.0	15	93	6	53	29	0	0	70	0.87
10836064--10836098	14	2.4	14	90	4	52	74	0	0	25	0.82
10837011--10837054	21	2.2	20	88	12	63	50	4	13	31	1.62
10841143--10841227	13	6.2	14	74	14	63	38	20	22	18	1.93
10842283--10842334	14	3.4	14	77	15	50	44	1	44	9	1.48
10848118--10848245	50	2.5	50	83	7	161	21	16	24	37	1.93
10848118--10848249	25	5.2	25	76	8	124	21	15	25	37	1.93
10849902--10849942	17	2.4	18	80	12	50	46	0	12	41	1.41
10866766--10866814	7	7.0	7	95	0	89	14	12	28	44	1.81
10866963--10867006	21	2.2	20	87	4	61	63	4	0	31	1.14
10866983--10867031	17	2.9	17	73	11	55	65	2	0	32	1.04
10871120--10871160	19	2.1	19	86	4	55	65	2	2	29	1.18
10872404--10872439	12	3.0	13	88	11	51	38	0	52	8	1.32
10872490--10872560	30	2.3	30	83	9	81	47	2	0	49	1.16
10876332--10876470	16	7.8	16	66	21	71	35	30	20	12	1.91
10876347--10876474	16	6.9	19	66	22	76	36	28	21	13	1.91
10876332--10876474	37	3.9	37	92	0	241	36	29	20	13	1.91
10879148--10879367	109	2.0	110	92	2	370	42	14	12	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10887254--10887348	50	1.9	50	80	4	111	50	8	2	38	1.45
10887405--10887534	51	2.6	50	80	10	131	45	9	1	43	1.45
10887098--10887525	145	2.9	146	87	5	609	44	9	2	43	1.49
10889577--10889610	10	3.3	10	91	4	50	17	2	0	79	0.86
10889605--10889649	22	2.1	22	88	8	67	28	6	0	64	1.19
10894792--10894841	22	2.3	22	83	10	59	60	0	4	36	1.16
10894917--10894972	17	3.3	17	85	9	62	64	1	1	32	1.14
10907850--10907903	20	2.6	21	76	2	56	53	5	3	37	1.42
10907883--10907930	22	2.1	23	84	7	62	50	0	2	47	1.12
10908666--10908724	23	2.6	22	76	10	66	74	0	5	20	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126