genome.fa.s1.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  120  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35941500--35941565	33	2.0	33	100	0	132	33	30	9	27	1.88
35945388--35945427	16	2.6	16	88	4	55	77	2	0	20	0.88
35946213--35946273	31	2.0	31	90	0	95	34	4	11	49	1.61
35946749--35946824	31	2.5	31	83	10	86	34	9	13	43	1.75
35951019--35951051	2	16.5	2	100	0	66	48	0	51	0	1.00
35961293--35961333	15	2.7	15	84	0	64	29	17	9	43	1.80
35969756--35970484	159	4.6	157	77	6	645	36	17	15	30	1.91
35969759--35970473	315	2.3	313	87	2	1024	37	17	15	29	1.91
35978184--35978255	31	2.4	30	90	4	110	40	12	15	31	1.84
35985177--35985209	3	11.0	3	100	0	66	66	0	0	33	0.92
35985918--35985993	31	2.5	31	78	4	84	42	17	7	32	1.78
35986578--35986695	55	2.2	56	83	6	152	28	3	16	51	1.60
35987514--35987556	4	10.5	4	85	5	59	67	0	30	2	1.03
35990537--35990623	7	12.4	7	75	13	72	25	2	26	45	1.65
35990844--35990889	21	2.2	21	84	0	56	21	17	34	26	1.95
35990881--35991017	45	3.0	44	86	4	175	18	21	28	31	1.97
35991581--35991670	43	2.1	43	87	4	128	48	10	10	31	1.69
35992965--35993014	16	3.2	16	73	21	52	34	0	6	60	1.21
35993183--35993225	21	2.0	23	86	9	63	37	4	0	58	1.19
35993557--35993599	21	2.1	21	91	4	70	60	13	0	25	1.34
35993978--35994020	4	10.8	4	85	9	61	0	23	0	76	0.78
35999391--35999437	15	3.5	14	75	19	55	17	0	2	80	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36006007--36006037	16	1.9	16	93	0	53	54	0	12	32	1.38
36007104--36007163	31	1.9	31	82	0	75	48	5	16	30	1.67
36013323--36013380	28	2.1	28	93	0	98	20	10	29	39	1.86
36015358--36015406	19	2.6	19	90	0	71	59	0	0	40	0.98
36020796--36020837	4	10.5	4	100	0	84	50	23	0	26	1.50
36022779--36022810	16	2.0	16	100	0	64	43	37	0	18	1.51
36029013--36029060	24	2.0	24	91	0	78	0	35	37	27	1.57
36029823--36029858	18	2.0	18	94	0	63	36	11	19	33	1.87
36038168--36038273	29	3.8	28	72	18	85	29	6	33	31	1.83
36038193--36038392	59	3.4	59	87	5	273	33	3	30	33	1.73
36038289--36038381	29	3.2	29	66	14	73	37	1	30	31	1.65
36038194--36038364	29	5.8	30	65	22	87	32	3	32	31	1.75
36040044--36040118	27	2.8	26	76	13	80	13	14	22	49	1.78
36040044--36040084	14	3.1	14	75	10	50	12	14	24	48	1.78
36040154--36040238	6	15.0	6	72	16	74	52	0	2	44	1.13
36040138--36040214	17	4.6	16	87	6	82	46	1	3	48	1.28
36040174--36040245	11	6.3	11	77	7	54	55	1	2	40	1.23
36050707--36050854	77	1.9	76	82	4	181	28	12	14	43	1.83
36055675--36055741	23	2.9	24	75	22	63	52	1	1	44	1.19
36056898--36056962	30	2.2	30	82	15	75	41	0	3	55	1.15
36058196--36058231	7	5.1	7	87	12	56	13	0	41	44	1.44
36058196--36058240	21	2.1	21	88	8	65	15	2	40	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36069852--36069883	7	4.7	7	92	7	57	0	0	59	40	0.97
36072019--36072060	4	10.5	4	85	10	59	80	0	19	0	0.70
36072025--36072060	17	2.1	17	94	0	63	80	0	19	0	0.71
36072018--36072057	13	3.2	13	86	10	57	82	0	17	0	0.67
36074291--36074375	43	2.0	43	83	4	109	31	12	10	44	1.77
36080829--36080853	8	3.1	8	100	0	50	0	12	0	88	0.53
36084743--36084773	2	15.5	2	100	0	62	48	0	0	51	1.00
36100262--36100332	10	7.2	10	75	16	51	36	7	1	54	1.36
36101082--36101127	21	2.2	21	84	7	58	36	17	15	30	1.91
36106147--36106375	29	7.9	27	73	15	126	32	3	24	39	1.73
36106145--36106379	57	4.1	57	81	7	226	32	3	25	38	1.74
36106151--36106375	30	7.7	30	75	11	184	33	4	23	39	1.73
36108333--36108371	17	2.3	17	86	0	60	56	2	0	41	1.13
36108865--36108966	16	5.8	16	67	20	60	9	20	34	35	1.86
36108860--36108966	37	2.9	37	95	0	196	10	20	32	36	1.86
36108881--36108951	21	3.6	21	70	18	71	8	21	33	36	1.83
36110655--36110713	13	4.4	14	76	8	59	22	16	22	38	1.93
36110654--36110744	47	1.9	47	82	4	112	21	18	19	39	1.92
36110679--36110741	27	2.3	27	81	5	74	22	20	20	36	1.95
36110655--36110713	7	8.7	7	72	7	50	22	16	22	38	1.93
36110663--36110713	20	2.5	20	78	12	59	21	17	21	39	1.93
36117317--36117407	7	13.3	7	69	9	53	20	23	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36117348--36117433	34	2.5	34	84	5	102	22	18	20	38	1.94
36117320--36117426	27	3.9	27	75	7	108	22	20	20	36	1.95
36118482--36118518	20	1.9	18	89	10	56	27	2	2	67	1.17
36119403--36119444	16	2.4	18	84	7	61	35	4	9	50	1.56
36132661--36132698	2	19.0	2	100	0	76	50	0	0	50	1.00
36136167--36136202	18	1.9	18	88	5	54	41	0	2	55	1.14
36144830--36144860	12	2.6	12	94	0	53	35	35	3	25	1.72
36151947--36151987	18	2.1	18	86	13	55	58	0	0	41	0.98
36151947--36151986	19	2.0	21	85	9	57	60	0	0	40	0.97
36153833--36154392	171	3.3	171	91	1	890	41	14	13	31	1.84
36171300--36171325	13	2.0	13	100	0	52	0	30	0	69	0.89
36174361--36174428	31	2.2	31	86	2	93	47	14	5	32	1.69
36175277--36175318	18	2.5	18	81	11	54	33	0	4	61	1.17
36175771--36175824	18	2.9	18	76	23	58	25	0	5	68	1.11
36180329--36180367	19	1.9	19	85	10	51	46	5	0	48	1.24
36192442--36192467	9	2.9	9	100	0	52	11	34	23	30	1.90
36193274--36193319	20	2.2	20	84	3	56	58	4	4	32	1.37
36194125--36194219	32	3.3	31	63	25	80	44	16	10	28	1.81
36194117--36194228	55	2.0	55	98	0	215	43	15	11	29	1.81
36200585--36200798	23	9.5	23	72	14	151	41	21	25	11	1.87
36200639--36200713	39	1.9	39	91	0	123	44	21	22	12	1.85
36200678--36200798	48	2.6	46	87	7	172	39	23	25	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36207605--36207729	23	5.3	23	84	9	164	12	25	22	40	1.88
36207605--36207731	48	2.7	46	85	7	184	11	25	22	40	1.87
36207605--36207754	48	3.2	44	82	11	165	12	26	22	39	1.89
36207605--36207776	71	2.4	71	82	8	183	12	26	21	39	1.89
36209781--36209994	23	9.5	23	71	14	142	42	21	24	11	1.86
36209874--36209994	48	2.6	46	87	7	172	39	23	25	11	1.88
36212103--36212214	52	2.2	52	80	9	122	50	5	0	44	1.25
36212124--36212244	63	2.0	62	88	8	185	52	4	0	42	1.20
36215992--36216038	15	3.1	15	81	0	58	25	19	2	53	1.56
36216201--36216262	27	2.4	27	81	5	74	19	17	9	53	1.71
36220748--36220796	23	2.1	23	96	0	89	34	24	24	16	1.95
36220838--36220862	11	2.3	11	100	0	50	16	0	44	40	1.47
36223793--36223836	19	2.2	20	80	15	56	77	4	6	11	1.11
36223793--36223841	19	2.6	19	83	6	55	75	6	8	10	1.18
36231440--36231464	7	3.6	7	100	0	50	44	0	0	56	0.99
36234917--36234951	18	1.9	18	88	0	52	40	0	2	57	1.14
36238482--36238535	22	2.2	25	81	15	69	55	0	5	38	1.23
36238488--36238534	24	2.0	24	88	8	71	55	0	6	38	1.26
36239009--36239052	22	1.9	22	90	9	70	29	6	4	59	1.44
36244684--36244746	31	2.0	31	84	0	81	44	6	11	38	1.66
36247742--36247783	21	2.0	21	90	0	66	42	30	2	23	1.67
36254553--36254591	21	1.9	20	89	5	60	61	0	5	33	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36255790--36255818	4	7.2	4	100	0	58	0	48	24	27	1.51
36255947--36255971	9	2.8	9	100	0	50	68	0	0	32	0.90
36259855--36260099	118	2.1	118	97	0	463	31	17	11	40	1.84
36261122--36261146	13	1.9	13	100	0	50	0	0	16	84	0.63
36266557--36266589	15	2.1	16	88	5	50	42	15	6	36	1.71
36270094--36270141	21	2.4	19	83	13	60	56	2	0	41	1.11
36270096--36270175	18	4.3	18	68	24	51	53	5	0	41	1.22
36274169--36274261	45	2.0	46	97	2	179	35	16	8	39	1.79
36276680--36276991	161	1.9	161	88	3	468	30	22	12	34	1.91
36278043--36278117	32	2.3	32	79	0	96	37	22	8	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126