genome.fa.s1.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  69  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20259710--20259850	19	7.3	19	70	12	74	60	0	2	36	1.13
20259709--20259774	18	3.5	18	78	15	71	66	0	0	33	0.92
20259710--20259850	39	3.6	37	79	12	142	60	0	2	36	1.13
20259710--20259850	10	14.7	9	69	14	77	60	0	2	36	1.13
20259797--20259861	29	2.2	28	81	7	76	61	0	6	32	1.21
20260369--20260429	12	5.5	11	75	12	63	75	14	1	8	1.11
20260370--20260448	22	3.5	22	78	5	68	73	13	2	10	1.19
20260454--20260549	21	4.8	20	75	13	74	70	15	5	8	1.29
20260465--20260549	20	4.4	19	80	14	93	70	16	5	7	1.29
20260465--20260536	10	7.4	10	69	17	53	72	12	6	8	1.28
20260442--20260510	32	2.2	32	82	10	79	72	14	5	7	1.25
20260837--20260883	19	2.4	19	79	10	51	25	8	2	63	1.34
20260858--20260973	28	4.1	28	75	14	96	27	6	0	64	1.24
20260929--20260976	18	2.7	18	90	6	71	29	4	0	66	1.10
20260832--20260978	10	15.4	10	66	18	55	30	6	1	61	1.28
20263319--20263434	26	4.5	26	84	4	144	37	23	16	23	1.94
20263329--20263434	52	2.0	52	90	0	167	36	23	15	24	1.93
20281443--20281478	18	1.9	19	88	5	56	61	5	13	19	1.52
20291855--20291981	26	4.9	26	83	3	139	31	22	19	25	1.98
20291885--20292031	26	5.7	26	82	1	161	34	24	14	26	1.94
20291864--20292035	78	2.2	78	84	3	213	34	23	15	26	1.95
20294483--20294630	42	3.5	42	83	7	185	27	24	10	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20295209--20295246	18	2.0	19	85	10	51	57	15	7	18	1.62
20298438--20298506	25	2.8	25	79	14	81	62	2	5	28	1.33
20309007--20309073	30	2.2	30	79	10	73	37	8	22	31	1.85
20313568--20313628	25	2.4	25	79	15	72	34	29	13	22	1.92
20323764--20323815	16	3.2	16	80	19	56	0	17	3	78	0.89
20324397--20324439	17	2.5	17	80	0	50	55	13	11	18	1.68
20332674--20332719	24	2.0	23	83	12	58	50	10	13	26	1.74
20367371--20367422	20	2.5	21	87	3	70	75	1	15	7	1.12
20367371--20367437	21	3.2	20	82	4	71	71	1	17	8	1.19
20379325--20379371	21	2.2	21	84	0	58	57	12	27	2	1.47
20386912--20387151	120	2.0	120	90	1	374	28	17	25	28	1.97
20400150--20400210	9	6.6	9	83	7	77	72	0	26	1	0.94
20400150--20400207	20	3.0	19	87	10	82	72	0	25	1	0.94
20400150--20400210	3	20.7	3	77	9	54	72	0	26	1	0.94
20400596--20400634	17	2.3	17	86	0	51	15	12	7	64	1.49
20413725--20413758	13	2.6	13	85	0	50	17	29	20	32	1.96
20424119--20424144	9	2.9	9	100	0	52	65	11	11	11	1.48
20428185--20428214	14	2.2	14	94	5	53	30	23	10	36	1.87
20436966--20437023	13	4.4	12	72	19	53	77	1	17	3	0.99
20438541--20438570	14	2.2	14	94	5	53	30	23	10	36	1.87
20442922--20442946	13	1.9	13	100	0	50	16	0	8	76	1.02
20464364--20464416	21	2.5	21	81	0	70	30	20	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20468193--20468233	10	3.9	10	87	6	55	0	21	0	78	0.76
20468971--20469014	21	2.1	21	83	8	54	2	25	11	61	1.41
20473835--20473876	21	2.0	21	95	0	75	38	21	9	30	1.85
20484708--20485100	52	7.6	52	83	4	454	26	16	21	35	1.94
20484708--20485082	105	3.6	103	82	7	431	27	16	21	35	1.94
20489618--20489670	26	2.0	28	85	7	74	67	5	3	22	1.28
20490531--20490561	15	2.0	16	93	6	55	61	0	6	32	1.21
20491994--20492026	15	2.2	15	94	0	57	42	27	24	6	1.78
20503772--20503796	12	2.1	12	100	0	50	76	0	24	0	0.80
20505868--20505897	13	2.4	13	94	5	53	66	0	30	3	1.07
20509016--20509055	17	2.4	16	87	4	53	57	12	12	17	1.65
20511415--20511454	18	2.2	18	86	0	53	15	22	25	37	1.93
20521185--20521330	23	6.3	23	84	3	177	35	6	12	45	1.67
20521184--20521330	69	2.1	69	86	2	197	36	6	12	45	1.67
20521400--20521474	34	2.1	34	90	4	114	28	12	24	36	1.91
20527422--20527520	23	4.3	23	88	2	146	33	8	14	44	1.74
20527422--20527516	45	2.1	46	88	2	138	31	8	14	45	1.75
20527590--20527701	36	3.2	35	84	5	145	26	11	25	35	1.90
20527600--20527701	34	2.9	36	89	4	163	26	12	24	36	1.91
20531928--20531964	18	2.2	18	85	9	51	40	24	0	35	1.55
20535791--20535822	16	2.0	16	100	0	64	25	6	0	68	1.12
20536549--20536697	75	2.0	75	89	0	226	28	26	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20536632--20536731	44	2.2	45	85	1	139	25	26	16	33	1.96
20541806--20541845	17	2.3	18	91	8	66	72	5	0	22	1.04
20543705--20543751	2	24.0	2	91	4	78	51	0	0	48	1.00
20544208--20544237	14	2.1	14	93	0	51	43	0	20	36	1.52
20545016--20545074	21	2.8	21	79	7	66	52	1	6	38	1.38
20545953--20546008	22	2.8	19	77	15	58	42	1	1	53	1.21
20554887--20554937	3	17.0	3	95	0	93	66	1	0	31	1.03
20555927--20555974	20	2.3	21	75	13	55	64	2	2	31	1.16
20555926--20555974	22	2.4	20	83	10	55	63	2	2	32	1.17
20556269--20556311	8	5.1	8	78	10	50	20	0	2	76	0.89
20556268--20556317	16	2.9	17	74	11	57	26	0	2	72	0.96
20556404--20556470	27	2.6	26	76	19	68	29	1	2	65	1.16
20561453--20561486	17	2.0	17	100	0	68	35	0	35	29	1.58
20561638--20561681	21	2.1	21	87	8	63	56	0	2	40	1.11
20566261--20566319	21	2.8	21	82	10	68	28	8	18	44	1.79
20569096--20569142	17	2.8	17	84	9	69	57	4	2	36	1.30
20575454--20575530	37	2.1	37	87	0	109	27	25	19	27	1.99
20577341--20577365	12	2.1	12	100	0	50	8	16	8	68	1.38
20578878--20578907	16	1.9	15	93	6	51	33	26	3	36	1.73
20580479--20580531	27	2.0	27	85	7	72	16	3	7	71	1.24
20598425--20598573	51	3.0	51	88	3	205	34	12	12	39	1.82
20609923--20609992	27	2.6	27	88	0	104	28	14	21	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20609975--20610072	27	3.6	27	72	18	87	26	17	28	27	1.98
20609975--20610062	28	3.3	27	72	20	69	29	14	28	27	1.95
20609973--20610102	55	2.4	55	77	12	142	27	16	28	26	1.97
20610174--20610312	27	5.1	27	72	11	104	32	14	25	28	1.94
20610141--20610265	54	2.3	54	87	0	178	32	15	24	28	1.95
20611576--20611693	40	2.9	41	85	6	161	27	21	24	27	1.99
20614624--20614703	20	4.2	20	70	23	64	63	2	2	31	1.20
20614758--20614803	20	2.3	20	85	7	58	56	2	0	41	1.11
20614767--20614850	41	2.0	41	81	0	96	63	2	1	33	1.15
20615613--20615656	19	2.6	16	79	13	52	68	0	4	27	1.09
20615646--20615713	27	2.5	27	79	11	75	61	0	1	36	1.05
20617336--20617449	30	3.8	30	82	2	131	35	21	1	40	1.64
20617431--20617609	30	6.1	29	75	9	123	35	18	7	38	1.79
20617368--20617599	59	3.9	59	78	9	170	35	19	5	39	1.75
20617454--20617609	30	5.3	30	78	6	147	35	17	7	39	1.78
20617438--20617612	59	3.0	59	80	8	196	34	17	7	40	1.78
20617782--20617817	18	2.0	18	94	0	63	27	0	8	63	1.23
20626105--20626153	14	3.1	16	80	14	57	53	0	2	44	1.12
20634605--20634719	58	2.0	58	89	0	176	33	0	16	49	1.46
20634628--20634738	58	1.9	58	87	7	163	30	0	18	50	1.53
20637108--20637150	17	2.5	17	84	3	50	20	25	2	51	1.60
20638162--20638192	15	2.1	15	100	0	62	25	0	32	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20640222--20640545	72	4.5	72	90	1	499	54	15	6	23	1.64
20640984--20641031	18	2.7	18	93	0	78	37	12	8	41	1.73
20646285--20646319	15	2.3	15	100	0	70	57	5	5	31	1.46
20651287--20651341	22	2.6	21	88	5	76	40	3	0	56	1.17
20652594--20652647	23	2.4	22	76	14	56	35	5	1	57	1.33
20654158--20654186	8	3.8	8	90	9	51	44	0	0	55	0.99
20654603--20654651	24	2.0	24	88	7	73	28	2	4	65	1.22
20656262--20656330	30	2.3	30	83	11	81	49	4	1	44	1.31
20658325--20658360	11	3.0	12	88	12	56	83	0	8	8	0.82
20669572--20669614	21	2.2	19	87	8	59	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126