genome.fa.s1.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  119  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35633167--35633230	29	2.2	29	86	5	85	29	4	26	39	1.76
35633186--35633252	29	2.3	29	84	2	80	32	5	16	44	1.72
35634254--35634350	12	7.2	12	67	22	50	42	2	6	49	1.39
35635127--35635167	17	2.3	18	91	4	66	53	0	2	43	1.13
35640536--35640574	17	2.3	17	86	8	53	41	5	2	51	1.38
35640554--35640599	24	1.9	24	90	0	74	28	2	13	56	1.48
35641651--35641683	17	1.9	17	93	0	57	24	15	27	33	1.95
35642529--35642652	30	4.2	30	75	13	105	41	16	4	36	1.70
35642527--35642666	59	2.4	59	79	3	147	39	19	5	35	1.75
35642697--35642958	58	4.5	57	83	6	314	30	26	4	38	1.75
35642678--35642839	29	5.6	29	73	15	120	30	26	3	38	1.74
35642800--35642951	29	5.2	30	73	20	117	30	26	3	39	1.72
35642703--35642913	29	7.2	28	73	18	125	32	26	2	38	1.71
35644722--35644753	16	2.0	16	93	0	55	43	15	12	28	1.83
35646413--35646477	21	3.2	20	79	18	71	21	10	12	55	1.67
35646421--35646518	20	4.8	21	76	7	76	23	14	10	52	1.72
35646421--35646519	42	2.4	41	83	3	110	24	14	10	51	1.72
35646445--35646498	21	2.6	21	85	2	65	29	14	7	48	1.71
35648527--35648569	14	3.1	13	80	12	50	69	9	11	9	1.36
35649573--35649708	30	4.5	30	78	2	139	36	18	4	40	1.71
35649574--35649706	60	2.2	60	83	2	169	36	18	3	41	1.69
35654846--35655168	29	11.1	29	77	8	266	36	24	4	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35654846--35655168	30	11.1	30	78	7	308	36	24	4	34	1.75
35654846--35655168	59	5.5	58	81	9	320	36	24	4	34	1.75
35655559--35655740	96	1.9	96	80	4	215	29	18	13	38	1.89
35663861--35663907	24	2.0	24	91	0	76	51	8	14	25	1.71
35666786--35666823	20	1.9	20	94	0	67	50	26	13	10	1.73
35666811--35666884	7	10.6	7	73	0	67	31	25	21	21	1.98
35668037--35668319	30	9.6	28	76	11	196	37	21	1	39	1.62
35668051--35668323	58	4.6	58	76	6	228	36	23	1	38	1.64
35672595--35672754	30	5.4	30	81	11	188	35	25	1	38	1.64
35672595--35672793	87	2.3	88	83	7	244	37	24	1	37	1.62
35672605--35672790	30	6.3	29	80	11	184	35	24	1	38	1.63
35675488--35675530	3	14.3	3	100	0	86	67	0	0	32	0.91
35693564--35693639	34	2.2	33	82	11	91	28	1	3	65	1.18
35696803--35696865	28	2.2	28	82	0	72	26	4	30	38	1.77
35696735--35697040	144	2.1	145	80	4	332	40	6	20	31	1.79
35697020--35697131	59	1.9	56	82	8	136	38	4	21	35	1.74
35696965--35697166	29	6.9	27	71	13	84	38	3	23	34	1.74
35696989--35697167	58	3.1	57	75	16	161	37	3	25	33	1.74
35698275--35698325	3	17.0	3	84	8	59	37	3	0	58	1.16
35698251--35698337	33	2.7	31	75	15	79	41	3	1	54	1.25
35698267--35698326	9	6.6	9	77	9	50	40	3	0	56	1.16
35699086--35699193	17	6.3	17	88	5	155	54	1	0	42	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35699102--35699193	6	16.0	6	73	17	79	55	2	1	41	1.19
35699103--35699193	11	8.0	11	75	12	78	56	2	1	40	1.19
35699117--35699195	23	3.5	23	77	10	74	56	2	0	40	1.12
35699233--35699289	17	3.2	17	80	9	53	40	0	1	57	1.09
35702769--35702805	18	2.1	18	94	0	65	29	0	5	64	1.15
35719337--35719382	13	3.6	13	77	13	51	32	0	0	67	0.91
35726020--35726098	2	39.5	2	100	0	158	49	0	50	0	1.00
35747128--35747166	6	6.5	6	87	0	51	23	30	0	46	1.53
35747805--35747846	21	2.0	22	85	4	59	26	9	7	57	1.56
35755270--35755295	1	26.0	1	100	0	52	0	0	0	100	0.00
35759793--35759838	2	23.0	2	100	0	92	50	0	0	50	1.00
35761910--35761952	22	1.9	22	85	4	59	51	2	0	46	1.13
35766248--35766273	13	2.0	13	100	0	52	30	15	7	46	1.74
35771788--35771826	18	2.2	18	90	0	60	30	7	38	23	1.83
35773815--35773844	3	10.0	3	100	0	60	33	0	0	66	0.92
35776052--35776083	13	2.3	15	89	10	50	28	0	0	71	0.86
35778489--35778513	2	12.5	2	100	0	50	0	0	48	52	1.00
35781047--35781094	23	2.1	23	92	0	78	52	4	14	29	1.60
35788283--35788323	20	2.0	20	100	0	82	36	14	14	34	1.87
35798930--35798959	6	4.8	6	92	8	51	16	13	0	70	1.18
35799224--35799401	57	3.1	56	80	7	189	24	13	12	49	1.77
35808505--35808861	59	6.1	59	90	2	504	33	2	30	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35808517--35808846	29	11.2	30	67	21	148	34	3	29	33	1.73
35810593--35810685	6	16.0	6	72	14	61	46	3	2	48	1.30
35810578--35810632	12	4.2	12	78	15	56	32	0	3	63	1.12
35810607--35810672	11	5.9	11	78	8	53	48	1	1	48	1.20
35810622--35810662	17	2.5	17	96	4	75	56	0	2	41	1.13
35810626--35810680	27	2.0	27	85	0	74	52	5	1	40	1.35
35819549--35819707	69	2.5	62	80	15	200	16	25	26	32	1.96
35820281--35820312	16	1.9	17	93	6	57	43	6	0	50	1.27
35831701--35831812	56	2.0	56	100	0	224	37	10	1	50	1.48
35846080--35846120	19	2.0	21	86	9	59	43	2	2	51	1.28
35847529--35847555	4	6.8	4	100	0	54	51	25	0	22	1.48
35847438--35847775	170	2.0	172	86	1	482	42	24	10	22	1.84
35849674--35849717	20	2.3	19	84	4	52	34	0	2	63	1.07
35849665--35849719	17	3.0	18	73	17	51	36	0	1	61	1.06
35851181--35851244	31	2.1	30	88	5	94	32	3	14	50	1.58
35851202--35851261	29	2.1	29	81	6	68	31	1	13	53	1.50
35852274--35852312	17	2.3	17	90	0	60	46	25	12	15	1.81
35859727--35860003	43	6.4	42	70	11	123	40	20	15	24	1.91
35859727--35860004	85	3.2	85	73	11	212	40	20	15	24	1.90
35865555--35865581	2	13.5	2	100	0	54	0	48	0	51	1.00
35866418--35866469	15	3.5	15	81	0	68	40	0	48	11	1.40
35866409--35866455	24	2.0	24	87	8	69	40	0	48	10	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35866408--35866470	30	2.1	30	90	0	99	42	0	47	9	1.36
35869873--35869902	14	2.1	14	93	0	51	56	0	0	43	0.99
35872083--35872127	21	2.1	21	87	0	63	11	20	17	51	1.75
35879098--35879153	16	3.4	16	70	20	53	44	0	0	55	0.99
35879756--35879786	9	3.4	9	95	0	53	32	9	12	45	1.75
35881291--35881409	59	2.0	59	85	3	159	21	21	19	36	1.95
35884738--35884877	59	2.4	59	80	5	158	34	4	30	31	1.77
35885152--35885217	34	2.0	34	88	8	100	59	6	15	19	1.57
35885260--35885289	15	1.9	15	93	6	51	6	20	50	23	1.71
35886645--35886671	14	1.9	14	100	0	54	51	0	11	37	1.37
35889848--35889895	21	2.2	22	82	10	55	25	6	6	62	1.42
35891778--35891865	31	2.8	31	79	6	106	37	10	7	44	1.68
35896135--35896194	29	2.3	25	83	16	77	31	6	11	50	1.65
35896143--35896204	29	2.1	29	93	0	106	30	4	12	51	1.61
35897992--35898043	24	2.3	23	81	18	65	46	11	0	42	1.40
35899205--35899262	16	3.4	16	73	17	62	20	12	10	56	1.64
35907095--35907246	30	5.1	29	82	10	182	33	2	20	43	1.66
35907543--35907592	22	2.3	22	75	3	57	46	12	2	40	1.52
35912263--35912322	18	3.3	17	77	13	57	28	1	3	66	1.17
35912262--35912322	17	3.3	18	71	13	52	27	1	3	67	1.16
35913595--35913642	23	2.0	25	84	8	64	54	8	0	37	1.31
35915112--35915185	32	2.3	32	100	0	148	27	22	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35917208--35917255	18	2.6	19	77	16	55	29	2	4	64	1.23
35921398--35921423	2	13.0	2	100	0	52	50	0	0	50	1.00
35922013--35922057	2	22.5	2	100	0	90	51	48	0	0	1.00
35922485--35922557	30	2.4	31	82	11	80	53	6	2	36	1.42
35922929--35923084	81	1.9	81	81	10	185	44	5	2	47	1.40
35931437--35931568	29	4.5	30	86	3	162	37	6	21	34	1.79
35931412--35931583	59	2.9	59	79	7	170	33	6	25	34	1.81
35932069--35932103	18	2.0	17	88	5	52	11	48	20	20	1.79
35932632--35932662	5	6.4	5	92	7	55	41	0	0	58	0.98
35933913--35933965	27	2.0	26	82	17	65	37	0	3	58	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126