genome.fa.s1.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  109  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32671492--32671520	15	1.9	15	100	0	58	62	0	0	37	0.96
32671602--32671631	16	1.9	15	93	6	51	43	13	0	43	1.43
32679708--32679804	28	3.3	28	66	16	79	30	8	7	53	1.58
32679685--32679809	60	2.1	60	98	0	241	32	11	6	50	1.63
32685131--32685161	11	2.8	11	100	0	62	45	16	9	29	1.79
32698961--32699006	24	1.9	24	86	0	65	56	4	10	28	1.53
32706140--32706183	23	1.9	23	86	9	63	50	4	4	40	1.43
32711495--32711528	6	5.7	6	86	13	52	79	0	2	17	0.86
32715821--32715890	32	2.4	28	83	13	79	65	17	5	11	1.43
32715880--32715926	15	3.3	15	74	17	55	70	19	2	8	1.24
32715890--32715920	12	2.6	12	89	0	53	70	19	3	6	1.22
32715881--32715958	27	3.0	26	75	14	70	70	17	2	8	1.25
32715908--32715949	21	1.9	23	85	9	61	71	19	2	7	1.20
32736004--32736049	14	3.2	14	80	17	58	67	2	6	23	1.25
32736707--32736743	18	2.1	18	90	10	58	40	10	45	2	1.53
32745185--32745209	13	1.9	13	100	0	50	40	24	8	28	1.83
32748668--32748700	13	2.6	13	90	4	50	51	18	9	21	1.73
32750130--32750378	29	8.6	30	71	21	183	33	4	29	32	1.76
32750124--32750441	29	11.0	28	69	19	172	33	3	30	33	1.75
32750124--32750434	58	5.3	58	86	5	380	33	3	30	33	1.75
32750525--32750840	162	2.0	162	88	2	474	42	14	18	24	1.88
32752394--32752449	6	9.2	6	83	11	60	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32752396--32752459	17	3.9	17	78	12	62	50	1	1	46	1.20
32752405--32752459	25	2.3	23	87	6	74	54	1	1	41	1.21
32757900--32757929	15	2.0	15	100	0	60	33	6	33	26	1.83
32760010--32760050	17	2.4	17	83	0	55	60	0	2	36	1.10
32763399--32763436	19	2.0	20	85	15	53	42	0	5	52	1.24
32767291--32767333	19	2.4	17	81	14	50	67	2	2	27	1.15
32770036--32770093	31	1.9	30	86	10	82	43	10	10	36	1.73
32781195--32781253	3	20.0	3	96	3	111	66	0	0	33	0.92
32786640--32786690	11	4.6	11	92	4	77	9	17	45	27	1.80
32787131--32787199	12	5.8	12	67	8	52	69	18	4	7	1.29
32787129--32787221	23	4.3	20	71	23	64	69	19	4	6	1.27
32787131--32787210	23	3.5	23	72	16	76	71	17	3	7	1.25
32787076--32787178	54	1.9	53	88	5	154	66	16	4	11	1.39
32787193--32787271	22	4.0	20	79	11	90	69	16	6	7	1.33
32787184--32787270	18	4.2	21	75	10	74	71	16	4	8	1.27
32787193--32787270	20	3.9	19	79	12	86	70	16	5	7	1.29
32791471--32791546	38	2.0	38	100	0	152	21	28	7	42	1.81
32799306--32799542	118	2.0	118	97	0	447	29	26	16	27	1.96
32801609--32801682	36	2.1	36	97	0	139	52	10	10	25	1.68
32802439--32802484	24	1.9	25	91	8	78	56	4	4	34	1.39
32803513--32803537	10	2.5	10	100	0	50	16	16	0	68	1.22
32803513--32803551	11	3.6	11	86	3	53	12	15	0	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32804498--32804535	17	2.2	17	86	9	51	73	0	5	21	1.02
32804557--32804584	13	2.2	13	100	0	56	14	7	0	78	0.95
32808525--32808570	24	1.9	25	91	8	78	56	4	4	34	1.39
32808633--32808666	13	2.6	13	85	0	50	58	11	0	29	1.33
32809954--32809994	22	1.9	20	85	14	55	46	2	9	41	1.50
32811754--32811857	51	2.0	51	100	0	208	47	0	17	35	1.48
32815628--32815652	3	8.3	3	100	0	50	36	32	32	0	1.58
32819202--32819239	18	2.1	18	85	9	51	26	10	13	50	1.73
32819330--32819354	7	3.6	7	100	0	50	44	12	12	32	1.78
32850210--32850244	16	2.2	16	90	10	54	34	14	28	22	1.93
32858374--32858408	16	2.2	16	90	10	54	34	14	28	22	1.93
32887112--32887158	23	2.0	23	88	8	69	59	8	8	23	1.54
32888348--32888379	2	16.0	2	100	0	64	50	0	0	50	1.00
32888452--32888517	27	2.4	27	100	0	132	50	3	22	24	1.63
32890208--32890421	68	3.2	67	90	2	340	41	11	7	40	1.68
32892305--32892361	21	2.8	21	84	7	73	54	29	0	15	1.42
32892788--32892823	18	2.0	18	88	0	54	61	0	0	38	0.96
32894123--32894166	7	6.3	7	100	0	88	56	0	29	13	1.38
32894837--32894861	3	8.3	3	100	0	50	32	32	0	36	1.58
32896470--32896504	17	2.1	16	89	5	52	40	0	0	60	0.97
32897401--32897475	33	2.3	33	84	8	93	34	0	0	65	0.93
32897452--32897494	19	2.3	18	80	4	50	37	0	2	60	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32898475--32898560	31	2.9	30	77	5	93	41	11	11	34	1.78
32902934--32903197	131	2.0	131	93	0	449	28	10	17	42	1.84
32906753--32906814	29	2.1	29	81	0	70	29	9	9	51	1.66
32908045--32908088	18	2.4	18	81	7	54	29	6	4	59	1.44
32910785--32910822	17	2.2	18	85	4	51	44	0	0	55	0.99
32915525--32915566	20	2.1	20	100	0	84	64	0	0	35	0.94
32920706--32920740	15	2.2	16	90	5	54	20	11	0	68	1.20
32923602--32923701	47	2.1	48	87	5	141	36	8	4	52	1.50
32931922--32931950	13	2.1	14	93	6	51	44	0	0	55	0.99
32932103--32932157	24	2.3	24	90	0	83	54	3	0	41	1.18
32932106--32932174	24	2.8	25	82	2	77	60	2	0	36	1.11
32935377--32935464	17	5.7	16	76	16	87	42	1	1	55	1.14
32935365--32935462	27	3.5	27	82	9	108	40	1	1	57	1.12
32935365--32935446	11	7.4	11	77	14	71	39	0	1	59	1.05
32935370--32935453	6	14.8	6	74	12	79	41	0	1	57	1.06
32937368--32937626	30	8.7	30	86	2	326	37	22	2	37	1.67
32937371--32937638	89	3.0	88	86	3	367	37	24	2	35	1.68
32937372--32937662	30	9.8	29	83	4	190	37	25	2	34	1.69
32937610--32937805	59	3.4	57	72	7	180	29	30	4	36	1.76
32937578--32937800	117	1.9	115	79	9	247	30	26	4	39	1.75
32947615--32947857	121	2.0	121	99	0	477	25	20	24	30	1.99
32949052--32949530	37	13.5	38	63	21	207	33	15	21	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32949089--32949334	31	7.4	31	68	15	141	35	15	21	28	1.93
32949046--32949532	68	6.9	68	88	5	634	33	16	21	28	1.95
32949317--32949573	76	3.4	76	92	0	408	31	16	21	29	1.95
32949324--32949525	38	5.3	38	65	24	131	32	16	22	28	1.96
32949941--32950028	17	5.7	16	76	16	87	42	1	1	55	1.14
32949929--32950026	27	3.5	27	82	9	108	40	1	1	57	1.12
32949929--32950010	11	7.4	11	77	14	71	39	0	1	59	1.05
32949934--32950017	6	14.8	6	74	12	79	41	0	1	57	1.06
32951172--32951200	14	2.1	14	100	0	58	13	20	27	37	1.91
32951930--32952252	30	10.8	30	87	2	400	36	22	2	37	1.69
32951929--32952260	90	3.7	89	86	2	441	37	22	2	37	1.69
32952233--32952429	59	3.4	58	73	4	191	29	29	4	36	1.76
32956062--32956221	58	2.8	56	82	12	175	45	1	1	51	1.17
32956392--32956443	16	3.2	16	91	5	79	26	32	3	36	1.75
32957024--32957088	31	2.1	31	82	5	78	41	13	10	33	1.80
32958410--32958809	41	9.8	40	81	6	324	24	26	28	21	1.99
32958410--32958809	82	4.9	82	79	7	377	24	26	28	21	1.99
32958410--32958809	123	3.3	120	82	6	448	24	26	28	21	1.99
32958788--32958832	24	1.9	23	90	4	72	26	15	35	22	1.94
32958750--32958873	65	1.9	64	90	1	194	19	25	30	25	1.98
32958812--32958961	41	3.7	40	81	10	153	24	20	27	28	1.99
32958812--32958961	42	3.6	41	81	9	155	24	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32958623--32958978	189	1.9	187	80	9	409	24	24	27	23	2.00
32960546--32960581	6	6.0	6	96	0	63	16	47	33	2	1.61
32963447--32964422	18	55.8	18	62	18	108	46	1	5	45	1.38
32963554--32964416	49	17.0	49	73	14	465	47	1	6	45	1.37
32963591--32963908	31	10.3	31	65	22	154	47	0	6	46	1.28
32963591--32963674	32	2.7	32	92	3	136	45	0	7	47	1.30
32963620--32964610	228	4.4	221	83	10	901	46	2	6	45	1.39
32963823--32963936	36	3.3	35	75	12	128	50	0	2	46	1.21
32964009--32964158	67	2.2	67	91	0	237	50	1	5	43	1.33
32964226--32964615	97	3.8	97	78	12	377	46	2	5	45	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126