genome.fa.s1.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  37  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11138785--11138821	14	2.6	15	83	8	51	21	5	5	67	1.31
11155113--11155149	15	2.4	15	90	4	56	62	2	35	0	1.10
11156224--11156274	17	2.9	17	81	16	59	78	0	19	1	0.85
11156225--11156274	12	4.4	11	80	14	57	80	0	18	2	0.82
11164756--11164810	24	2.3	24	87	0	74	27	14	7	50	1.69
11166379--11166408	16	1.9	16	93	6	53	76	0	0	23	0.78
11167614--11167670	30	1.9	30	89	7	89	29	8	0	61	1.26
11167739--11167793	12	4.8	11	75	20	51	18	3	3	74	1.11
11167737--11167806	21	3.5	20	79	11	72	18	5	4	71	1.23
11171849--11171879	16	1.9	16	93	0	53	51	9	16	22	1.73
11179028--11179254	41	5.5	41	84	3	260	40	10	22	26	1.87
11179028--11179253	82	2.7	82	85	2	292	40	10	22	26	1.86
11179028--11179283	82	3.1	81	81	5	275	40	9	23	26	1.85
11179028--11179283	41	6.2	41	84	3	248	40	9	23	26	1.85
11179028--11179283	123	2.1	121	80	5	282	40	9	23	26	1.85
11194636--11194674	18	2.1	19	90	4	62	64	5	2	28	1.28
11194641--11194682	18	2.2	18	87	8	57	69	4	0	26	1.08
11197268--11197307	21	1.9	21	90	10	64	20	12	7	60	1.56
11202005--11202075	26	2.7	25	74	21	65	36	1	4	57	1.27
11214746--11214811	21	2.9	23	75	11	73	51	0	1	46	1.10
11215294--11215355	23	2.7	23	79	13	65	41	0	58	0	0.98
11215307--11215357	6	8.2	6	85	10	59	39	0	60	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11215309--11215365	17	3.4	17	88	9	73	36	0	63	0	0.95
11216523--11216644	61	2.0	61	91	0	199	22	20	10	45	1.82
11218004--11218028	5	5.0	5	100	0	50	20	0	0	80	0.72
11218596--11218644	26	2.0	25	84	8	64	67	8	4	20	1.34
11218600--11218766	56	2.9	57	77	7	187	58	8	7	25	1.54
11229084--11229115	16	2.1	16	88	11	50	75	6	3	15	1.14
11234772--11234829	27	2.1	27	100	0	116	34	13	10	41	1.79
11239705--11240289	304	1.9	305	83	5	754	33	14	22	29	1.93
11240057--11240730	378	1.8	370	84	3	927	39	12	19	28	1.88
11242310--11242353	22	2.0	23	86	4	63	22	0	15	61	1.34
11242596--11242621	3	8.7	3	100	0	52	34	0	0	65	0.93
11243622--11243657	16	2.2	16	90	0	54	11	22	19	47	1.80
11243703--11243744	19	2.2	19	95	0	75	23	14	19	42	1.87
11245135--11245180	11	4.1	11	78	15	58	52	17	10	19	1.74
11245218--11245260	14	3.2	14	77	9	54	76	16	0	6	0.99
11247536--11247574	12	3.2	12	85	3	51	69	7	0	23	1.14
11247917--11247963	21	2.1	22	88	7	69	25	25	17	31	1.97
11256231--11256257	7	3.9	7	100	0	54	11	0	0	88	0.50
11257114--11257188	30	2.6	29	76	18	82	56	5	0	38	1.22
11257474--11257530	27	2.0	27	83	6	69	57	3	1	36	1.26
11259684--11259735	17	3.4	17	65	25	51	50	9	5	34	1.59
11259646--11259742	29	3.3	29	91	2	140	50	10	4	35	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11259922--11259958	18	2.1	18	89	0	56	29	10	21	37	1.88
11268747--11268798	20	2.6	20	81	6	61	50	11	1	36	1.50
11269343--11269383	21	2.0	21	85	0	55	48	9	4	36	1.58
11269364--11269398	18	1.9	18	88	0	52	51	11	8	28	1.67
11269332--11269426	20	4.8	20	73	8	79	43	15	8	32	1.77
11274158--11274200	11	4.0	10	82	11	50	18	6	2	72	1.19
11274266--11274316	22	2.3	22	80	6	59	17	21	9	50	1.74
11274438--11274480	20	2.2	20	87	8	61	27	13	9	48	1.73
11274448--11274519	20	3.6	20	75	3	65	29	9	8	52	1.63
11274721--11274779	20	3.0	20	71	0	64	25	11	8	54	1.65
11279980--11280012	13	2.6	13	90	4	50	33	0	18	48	1.48
11287296--11287335	21	1.9	21	89	0	62	17	12	12	57	1.65
11290376--11290489	54	2.1	54	93	0	192	44	29	16	8	1.78
11290434--11290572	75	1.9	75	96	0	260	38	33	17	10	1.85
11290609--11290688	24	3.3	24	84	3	99	21	56	5	17	1.60
11290630--11290785	30	5.4	29	78	10	151	23	58	3	14	1.53
11290630--11290806	27	6.3	27	79	14	164	23	57	3	15	1.53
11290630--11290806	57	3.1	57	83	6	218	23	57	3	15	1.53
11290654--11290806	30	5.2	29	78	12	143	24	58	2	14	1.49
11290654--11290784	3	39.7	3	72	15	82	25	59	3	12	1.47
11292213--11292248	18	2.0	18	94	0	63	30	36	16	16	1.91
11293517--11293578	26	2.4	26	88	0	97	50	0	1	48	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11301924--11301966	16	2.7	16	82	10	52	41	2	2	53	1.26
11319047--11319147	52	1.9	52	86	4	141	51	8	0	38	1.40
11320365--11320484	31	3.9	31	92	4	199	30	17	6	45	1.74
11320369--11320484	61	1.9	62	92	5	200	31	17	6	45	1.72
11320431--11320624	89	2.2	90	82	7	227	25	14	11	48	1.78
11322507--11322555	22	2.1	25	81	11	59	61	0	6	32	1.21
11324835--11324896	31	2.0	31	100	0	124	45	9	3	41	1.53
11328132--11328278	39	3.8	39	87	0	195	21	17	23	38	1.93
11328128--11328278	78	1.9	78	89	0	230	20	17	23	38	1.93
11328368--11328564	73	2.7	71	81	6	218	21	29	21	26	1.99
11328379--11328564	72	2.6	71	81	6	214	20	29	22	27	1.99
11339784--11339812	12	2.5	12	94	5	51	6	0	37	55	1.27
11346470--11346508	20	2.0	20	100	0	78	23	41	15	20	1.90
11370095--11370135	16	2.5	16	84	4	55	21	2	4	70	1.18
11371213--11371360	30	4.9	30	76	8	140	38	5	19	36	1.75
11371213--11371360	60	2.5	60	80	4	156	38	5	19	36	1.75
11371315--11371379	30	2.2	29	84	13	80	41	4	15	38	1.68
11371593--11371748	59	2.6	59	86	5	181	37	5	21	34	1.78
11371614--11371748	29	4.6	30	82	7	159	38	5	21	34	1.78
11371609--11371758	30	5.1	29	78	12	144	38	5	20	36	1.75
11371155--11371909	379	2.0	380	89	1	1174	43	9	17	29	1.80
11372602--11372635	14	2.3	15	90	5	52	0	2	26	70	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11376852--11376981	29	4.5	28	73	15	106	31	15	17	35	1.91
11376965--11377119	29	5.3	30	75	6	122	32	20	16	30	1.94
11376881--11377121	58	4.2	58	83	1	270	32	19	17	31	1.94
11377173--11377351	87	2.1	85	79	8	191	32	21	13	31	1.93
11378573--11378973	132	3.0	133	91	3	652	38	4	16	39	1.69
11379349--11379618	102	2.6	102	81	3	319	24	24	24	27	2.00
11389224--11389262	20	1.9	21	84	5	53	48	2	2	46	1.29
11390297--11390391	26	3.5	26	73	16	95	43	0	1	55	1.06
11392556--11392589	17	1.9	18	88	5	52	67	2	0	29	1.05
11392791--11392826	16	2.1	18	90	10	58	30	2	5	61	1.33
11393258--11393338	37	2.2	37	90	2	126	16	20	30	32	1.95
11397170--11397214	14	3.1	14	75	12	54	42	0	0	57	0.98
11397811--11398004	99	2.0	98	88	1	289	42	8	26	22	1.82
11398127--11398171	9	4.6	10	81	13	58	48	0	0	51	1.00
11398133--11398178	20	2.2	21	92	3	76	45	2	0	52	1.13
11398133--11398178	11	4.5	11	81	13	53	45	2	0	52	1.13
11401152--11401265	42	2.7	42	82	2	122	43	18	14	22	1.87
11401178--11401295	42	2.8	42	84	0	146	41	21	14	22	1.89
11401178--11401324	42	3.5	42	80	1	143	43	21	12	22	1.86
11407257--11407305	22	2.2	21	82	10	62	51	0	2	46	1.12
11407265--11407311	22	2.1	23	96	4	87	48	0	0	51	1.00
11414734--11414776	14	2.9	15	75	6	52	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11417931--11417999	2	34.5	2	100	0	138	49	0	50	0	1.00
11419925--11419966	23	1.9	23	90	9	70	0	14	2	83	0.75
11426177--11426305	64	2.0	64	100	0	258	29	26	6	37	1.81
11433663--11433754	25	3.7	25	85	0	121	28	28	19	23	1.98
11439737--11439793	16	3.5	17	73	20	50	21	19	1	57	1.49
11440907--11440944	15	2.6	15	88	12	53	36	0	0	63	0.95
11447157--11447517	57	6.4	57	82	2	422	35	14	19	31	1.91
11447157--11447545	169	2.3	171	81	4	455	36	14	18	31	1.90
11450283--11450359	28	2.8	28	78	6	66	25	20	29	23	1.99
11451418--11451450	16	2.1	16	94	0	57	33	0	27	39	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126