genome.fa.s1.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  107  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32084109--32084150	22	1.9	22	90	0	66	47	7	9	35	1.64
32088894--32088922	15	2.0	15	93	6	51	72	0	6	20	1.07
32089321--32089359	20	2.0	20	95	5	71	53	5	5	35	1.45
32100508--32100548	6	6.8	6	100	0	82	14	34	0	51	1.43
32102539--32102564	10	2.6	10	100	0	52	92	0	0	7	0.39
32103085--32103123	10	3.6	10	81	18	51	25	0	2	71	0.98
32108124--32108168	6	7.8	6	80	9	58	44	2	2	51	1.26
32108114--32108169	11	5.0	11	82	4	67	42	3	1	51	1.29
32108096--32108168	17	4.3	17	81	8	78	42	4	2	50	1.35
32108205--32108229	13	1.9	13	100	0	50	32	24	8	36	1.84
32111367--32111407	21	2.0	21	85	9	57	26	4	19	48	1.69
32121905--32122053	61	2.4	61	78	8	151	37	10	7	44	1.66
32121940--32122070	61	2.1	61	83	8	160	38	12	6	42	1.69
32122883--32122907	13	1.9	13	100	0	50	40	20	0	40	1.52
32126883--32126930	16	2.9	16	93	3	69	20	33	6	39	1.78
32126892--32126930	16	2.4	16	100	0	78	17	28	7	46	1.76
32131806--32131853	22	2.1	22	88	3	69	72	4	8	14	1.23
32132669--32132711	19	2.3	19	84	8	52	58	4	0	37	1.19
32134159--32134223	4	15.8	4	79	17	71	78	0	3	18	0.88
32134157--32134225	16	4.1	17	82	10	81	79	0	2	17	0.85
32136330--32136369	21	1.9	21	89	0	62	25	17	15	42	1.88
32136337--32136380	21	2.1	21	82	0	52	27	15	15	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32137920--32137976	22	2.5	22	85	8	69	71	3	10	14	1.25
32138784--32138826	19	2.3	19	84	8	52	58	4	0	37	1.19
32139794--32139926	48	2.8	48	87	0	176	15	25	31	27	1.95
32140726--32140928	87	2.3	86	81	8	243	40	15	7	35	1.76
32141112--32141176	19	3.4	19	72	10	60	66	1	1	30	1.10
32141367--32141470	10	10.6	10	67	14	56	29	5	1	62	1.29
32141369--32141434	19	3.4	19	69	22	57	30	7	1	60	1.33
32141408--32141469	29	2.1	29	85	11	83	32	4	1	61	1.27
32141427--32141510	20	4.4	19	70	16	57	36	2	1	59	1.18
32141367--32141452	39	2.2	39	81	8	95	30	5	1	62	1.26
32142006--32142195	57	3.2	59	87	5	215	26	16	11	45	1.81
32142006--32142110	31	3.6	30	75	12	110	25	16	12	45	1.82
32142022--32142198	62	3.0	60	87	5	227	27	16	10	45	1.80
32142349--32142509	60	2.7	60	81	6	193	49	11	13	25	1.76
32142433--32142488	29	1.9	29	82	7	69	55	10	12	21	1.67
32142349--32142509	61	2.7	59	80	6	189	49	11	13	25	1.76
32147876--32148473	299	2.0	300	89	1	905	29	18	16	34	1.94
32149795--32151217	715	2.0	716	90	0	2213	28	20	17	34	1.95
32164112--32164141	15	1.9	15	93	6	51	86	3	10	0	0.67
32164369--32164406	19	2.0	20	89	5	60	31	7	0	60	1.25
32166021--32166058	17	2.2	18	85	4	51	50	0	10	39	1.37
32169685--32169984	52	5.8	52	92	0	476	27	14	25	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32177001--32177248	52	4.8	52	88	0	361	31	13	22	32	1.93
32178779--32179357	291	2.0	291	100	0	1158	34	10	17	37	1.85
32180116--32180164	21	2.3	21	85	0	71	38	30	16	14	1.88
32181305--32181365	3	21.7	3	83	12	85	0	29	0	70	0.88
32188286--32188319	16	2.2	16	89	5	52	32	0	11	55	1.36
32189081--32189133	18	3.0	18	73	13	56	35	1	0	62	1.06
32189233--32189281	12	4.2	12	81	5	55	46	0	0	53	1.00
32189284--32189346	26	2.5	25	84	7	74	55	1	3	39	1.25
32196940--32197130	60	3.2	58	80	3	211	28	13	13	44	1.82
32197350--32197418	31	2.2	32	82	7	88	47	10	15	26	1.77
32197350--32197469	31	3.9	31	73	10	86	50	10	12	25	1.72
32197756--32197800	6	7.7	6	95	5	83	0	15	68	15	1.21
32200502--32200528	3	9.0	3	100	0	54	66	0	33	0	0.92
32223061--32223227	44	3.8	44	88	1	219	42	22	11	22	1.86
32223061--32223227	88	1.9	88	88	2	255	42	22	11	22	1.86
32223086--32223239	44	3.5	44	89	0	227	43	22	11	22	1.84
32224710--32224821	12	9.8	12	74	14	94	70	17	2	8	1.25
32224696--32224821	43	2.8	44	79	9	148	69	18	2	9	1.26
32227662--32227700	10	3.9	10	86	0	51	28	2	0	69	1.02
32228567--32228639	31	2.4	31	88	6	105	20	12	20	46	1.82
32229065--32229102	17	2.3	17	86	4	51	42	5	2	50	1.39
32238931--32238985	24	2.3	24	84	6	67	29	3	29	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32250311--32250348	12	3.2	12	96	0	67	34	28	15	21	1.94
32251160--32251521	119	3.0	119	98	1	688	34	7	6	51	1.56
32254547--32254615	32	2.1	33	97	2	131	42	5	7	44	1.56
32254547--32254635	32	2.8	31	88	6	99	44	4	7	42	1.53
32255701--32255912	43	4.9	43	73	6	171	29	17	21	31	1.96
32255721--32255914	86	2.2	87	82	0	219	27	17	22	32	1.96
32255972--32256001	15	2.0	15	93	0	51	13	10	26	50	1.73
32256192--32256231	18	2.2	19	90	4	64	25	2	2	70	1.13
32263067--32263112	10	4.5	10	82	12	58	19	10	0	69	1.17
32263221--32263289	11	5.9	12	79	16	56	18	2	5	72	1.18
32263230--32263289	23	2.7	23	77	12	70	18	1	5	75	1.07
32263230--32263479	4	61.5	4	66	21	62	18	4	5	70	1.25
32263202--32263290	12	7.8	12	71	14	55	16	4	6	71	1.24
32263259--32263302	14	3.4	14	75	18	58	20	4	2	72	1.13
32263262--32263309	25	1.9	25	87	8	71	20	6	2	70	1.19
32263413--32263496	18	4.7	18	73	21	79	21	4	2	71	1.16
32263421--32263490	32	2.2	32	82	7	79	22	5	2	68	1.24
32264545--32264584	18	2.4	17	87	8	55	77	2	2	17	0.99
32264547--32264590	21	2.2	20	87	4	61	75	2	2	20	1.03
32264547--32264615	20	3.3	20	79	4	66	71	2	4	21	1.17
32275348--32275413	24	2.8	23	77	6	69	27	12	9	51	1.69
32277353--32277421	24	2.9	24	89	8	113	24	11	8	55	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32278967--32279008	18	2.3	18	80	8	50	64	0	0	35	0.94
32279236--32279269	2	17.0	2	100	0	68	50	0	0	50	1.00
32281271--32281436	55	3.0	55	75	12	160	30	4	11	53	1.57
32287549--32287741	29	6.7	28	70	20	123	33	2	31	33	1.72
32287549--32287744	58	3.4	59	89	2	290	32	2	31	33	1.72
32287818--32288149	162	2.0	162	93	0	565	43	12	17	26	1.85
32289558--32289631	11	6.8	11	77	9	71	56	1	1	40	1.16
32289558--32289641	28	3.0	28	82	5	109	58	2	2	36	1.24
32289566--32289625	16	3.7	16	82	4	75	58	1	1	38	1.18
32289558--32289630	5	13.6	5	79	11	74	57	1	1	39	1.16
32289945--32290300	38	9.3	37	62	24	116	32	19	16	32	1.93
32289907--32290515	76	7.9	76	90	3	882	32	19	17	31	1.94
32289907--32290508	154	3.9	154	91	2	960	32	18	17	31	1.94
32289907--32290512	230	2.6	227	90	3	960	32	18	16	31	1.94
32302383--32302696	59	5.4	59	90	3	485	33	1	30	33	1.68
32302386--32302696	117	2.7	116	91	3	491	34	1	30	34	1.68
32302770--32303100	162	2.0	161	92	0	554	43	12	16	26	1.84
32303243--32303270	5	5.6	5	100	0	56	0	21	60	17	1.36
32304664--32304712	6	8.7	6	80	13	59	57	0	0	42	0.99
32304663--32304698	11	3.3	11	96	0	63	55	0	0	44	0.99
32304663--32304730	5	12.6	5	76	14	55	58	0	1	39	1.07
32304664--32304741	17	4.6	17	84	6	79	60	0	1	38	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32304650--32304725	28	2.7	28	87	4	100	57	0	1	40	1.07
32312291--32312383	39	2.4	39	88	0	150	20	13	29	36	1.91
32315973--32316030	28	2.1	28	96	0	107	41	0	18	39	1.51
32316059--32316094	15	2.4	15	90	0	54	50	5	25	19	1.69
32316289--32316322	3	11.3	3	100	0	68	67	0	0	32	0.91
32316675--32316705	12	2.6	12	94	0	53	45	0	0	54	0.99
32317639--32317677	2	19.5	2	94	0	69	46	0	0	53	1.00
32317643--32317681	12	3.2	12	96	0	69	43	0	0	56	0.99
32320016--32320070	27	2.0	27	83	13	69	40	0	1	58	1.09
32322727--32323153	29	14.7	28	68	24	137	33	2	30	33	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126