genome.fa.s1.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  7  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2306776--2306833	23	2.5	23	97	0	107	55	3	8	32	1.47
2306922--2306956	11	3.3	11	88	4	54	74	5	2	17	1.14
2306944--2307007	19	3.4	19	81	10	62	64	4	0	31	1.14
2306965--2307072	28	3.8	28	80	15	107	57	3	0	38	1.17
2306943--2307071	9	13.4	9	75	13	98	60	3	0	36	1.12
2306949--2307051	28	3.6	28	79	7	59	59	3	0	36	1.16
2313160--2313199	21	1.9	21	85	10	55	45	0	0	55	0.99
2314579--2314633	2	28.0	2	96	3	103	49	0	0	50	1.00
2315642--2315710	29	2.4	30	83	7	81	43	4	13	39	1.63
2316253--2316294	22	2.0	21	86	9	59	59	0	0	40	0.97
2316814--2316860	15	3.1	16	72	12	53	23	23	6	46	1.75
2331781--2331831	24	2.2	22	82	10	57	21	5	3	68	1.27
2332564--2332652	43	2.1	43	93	0	151	24	8	15	50	1.73
2337199--2337231	17	2.0	16	94	5	57	30	6	3	60	1.36
2338018--2338078	13	4.4	13	75	15	59	47	3	6	42	1.45
2348580--2348621	20	2.1	20	100	0	84	40	23	14	21	1.90
2353127--2353185	29	2.0	29	86	3	82	28	5	13	52	1.61
2364896--2364937	20	2.0	21	86	4	59	45	11	0	42	1.41
2365587--2365626	20	2.0	20	90	4	64	37	0	0	62	0.95
2367137--2367178	19	2.2	19	83	8	50	30	14	0	54	1.40
2373341--2373375	4	8.5	4	87	6	52	48	20	0	31	1.50
2375168--2375197	15	2.0	15	93	0	51	36	3	0	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2379150--2379189	21	1.9	21	84	0	53	25	2	2	70	1.13
2381082--2381122	20	2.0	20	90	9	64	43	12	7	36	1.70
2385606--2385630	12	2.1	12	100	0	50	32	0	0	68	0.90
2408603--2408629	3	9.0	3	100	0	54	66	0	0	33	0.92
2410937--2411000	29	2.2	29	81	10	69	32	9	3	54	1.48
2411508--2411545	15	2.7	15	88	8	53	26	0	5	68	1.11
2419732--2419774	8	5.0	8	81	10	50	48	2	2	46	1.27
2419732--2419794	27	2.3	27	97	0	117	49	3	3	44	1.34
2420213--2420268	30	1.9	28	82	13	69	60	16	1	21	1.44
2422412--2422443	3	10.7	3	100	0	64	34	0	0	65	0.93
2424333--2424363	6	5.2	6	96	0	53	0	29	51	19	1.47
2425522--2425569	20	2.5	20	83	12	64	54	2	2	41	1.24
2425850--2425967	62	1.9	62	96	0	218	38	8	6	45	1.61
2429323--2429377	22	2.4	23	80	14	69	32	5	0	61	1.19
2429333--2429375	23	1.9	22	90	4	68	32	6	0	60	1.23
2440713--2440831	61	2.0	61	91	3	195	32	11	17	37	1.86
2450824--2450914	46	2.0	45	95	2	164	24	31	8	35	1.86
2462016--2462091	30	2.6	30	85	10	111	44	11	14	28	1.80
2462426--2462466	16	2.7	15	77	7	55	29	2	4	63	1.28
2467779--2467847	7	10.3	7	78	9	56	28	2	0	68	1.04
2467783--2467848	26	2.5	26	90	2	96	31	3	0	65	1.08
2467773--2467848	27	2.9	26	84	3	98	28	2	1	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2471762--2471852	27	3.3	26	69	16	67	20	8	8	61	1.52
2471761--2471914	59	2.6	58	83	4	173	24	11	7	55	1.62
2472141--2472212	30	2.4	30	84	9	92	44	11	15	29	1.80
2472083--2472258	89	2.0	89	85	7	241	46	11	15	26	1.81
2482864--2482901	15	2.6	15	83	4	51	28	0	2	68	1.03
2491666--2491741	38	2.0	38	100	0	152	31	7	13	47	1.71
2499669--2499707	3	13.3	3	89	5	62	66	2	0	30	1.05
2500763--2500828	27	2.4	27	84	0	87	34	21	24	19	1.96
2500784--2500821	20	1.9	20	88	0	58	36	21	21	21	1.95
2500777--2500857	34	2.5	34	76	9	80	34	22	23	19	1.96
2500846--2500897	11	4.7	11	75	0	59	21	26	30	21	1.98
2500837--2500897	22	2.8	22	82	5	70	22	27	29	19	1.98
2501304--2501378	11	6.5	11	73	14	62	69	0	25	5	1.09
2501312--2501376	12	5.5	12	70	17	55	70	0	23	6	1.09
2501304--2501376	23	3.1	23	75	11	67	69	0	24	5	1.09
2506811--2506838	3	9.3	3	100	0	56	67	0	0	32	0.91
2507917--2507946	13	2.3	13	94	0	51	43	26	13	16	1.85
2507908--2508009	7	14.9	7	72	4	64	34	19	24	21	1.96
2507943--2508009	14	4.8	14	86	0	89	32	17	25	23	1.97
2507908--2507999	21	4.5	21	73	9	82	33	19	25	21	1.97
2507943--2508018	28	2.8	28	81	2	91	34	18	25	22	1.96
2508448--2508512	23	2.8	24	79	11	71	67	0	26	6	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2508458--2508513	11	5.0	11	76	18	53	67	0	25	7	1.15
2523964--2523997	3	11.3	3	93	0	59	0	29	32	38	1.58
2527503--2527535	16	2.0	17	88	5	50	63	6	24	6	1.40
2530717--2530743	12	2.2	12	100	0	54	7	7	66	18	1.40
2532873--2532931	29	2.0	30	86	3	84	49	13	5	32	1.64
2533632--2533686	28	2.0	28	82	13	69	20	20	0	60	1.37
2544154--2544209	24	2.3	24	87	0	85	19	32	21	26	1.97
2546607--2546636	13	2.4	13	94	5	53	6	0	13	80	0.91
2547094--2547122	6	4.8	6	100	0	58	68	13	0	17	1.20
2551665--2551706	19	2.3	18	84	12	50	54	0	0	45	0.99
2557896--2557925	1	30.0	1	100	0	60	0	0	100	0	0.00
2559474--2559562	37	2.4	38	98	1	171	31	5	5	57	1.45
2563333--2563387	28	1.9	29	88	3	85	36	18	14	30	1.91
2565404--2565448	23	1.9	24	95	4	83	24	0	17	57	1.40
2565619--2565653	15	2.2	17	90	10	56	40	5	0	54	1.24
2569455--2569483	13	2.1	14	93	6	51	65	24	0	10	1.23
2569865--2569915	2	25.5	2	95	0	93	49	0	0	50	1.00
2594524--2594580	22	2.6	22	77	0	69	17	8	12	61	1.55
2595073--2595299	128	1.8	125	82	3	294	24	11	13	50	1.74
2595932--2595963	2	16.0	2	93	0	55	46	3	0	50	1.17
2596814--2596875	22	2.8	22	76	9	81	38	12	3	45	1.59
2596827--2596861	11	3.2	11	100	0	70	37	11	0	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2597477--2597545	26	2.7	24	77	16	84	65	1	4	28	1.21
2598465--2598519	24	2.2	25	84	12	69	25	3	1	69	1.15
2598546--2598615	27	2.7	25	79	14	79	34	2	1	61	1.20
2598580--2598634	27	2.1	25	83	12	67	34	3	0	61	1.13
2599126--2599161	2	18.0	2	100	0	72	50	0	0	50	1.00
2612006--2612037	16	2.0	16	93	0	55	37	3	0	59	1.13
2631802--2631897	41	2.3	41	96	0	174	29	6	27	37	1.81
2634073--2634126	18	3.0	17	81	15	56	16	0	7	75	1.01
2634234--2634259	2	13.0	2	100	0	52	50	0	0	50	1.00
2639522--2639577	14	3.9	15	74	21	57	42	1	0	55	1.10
2640783--2641023	30	8.0	30	90	0	356	34	4	25	35	1.77
2642861--2642952	6	15.5	6	76	18	95	53	0	3	43	1.17
2642885--2642935	11	4.8	11	76	9	52	52	0	5	41	1.25
2642874--2642952	37	2.1	38	83	9	99	54	0	3	41	1.18
2642861--2642952	17	5.6	16	82	13	107	53	0	3	43	1.17
2651517--2651546	7	4.3	7	100	0	60	26	13	30	30	1.94
2652530--2652582	23	2.2	24	86	3	72	45	7	7	39	1.61
2655133--2655157	12	2.1	12	100	0	50	16	8	36	40	1.77
2668386--2668434	23	2.1	23	84	0	62	51	10	16	22	1.74
2670611--2670955	162	2.1	162	83	2	444	25	16	11	46	1.80
2671027--2671231	30	6.9	30	79	6	202	36	23	3	36	1.74
2671205--2671335	58	2.2	58	87	1	190	32	32	2	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2680470--2680508	19	2.1	19	90	4	62	20	2	23	53	1.57
2683039--2683067	12	2.3	13	94	5	51	27	0	0	72	0.85
2686408--2686486	27	2.9	27	77	5	70	20	32	13	32	1.92
2686550--2686578	4	7.2	4	100	0	58	24	0	75	0	0.80
2688452--2688505	27	2.0	27	100	0	108	25	3	25	44	1.71
2697034--2697102	4	17.2	4	83	5	77	65	0	31	2	1.08
2700110--2700165	28	2.0	27	82	3	67	26	1	23	48	1.61
2699979--2700354	184	2.0	184	90	0	581	27	6	20	45	1.76
2700569--2700615	21	2.2	20	88	7	67	29	12	31	25	1.93
2702369--2702463	30	3.2	30	66	8	77	44	12	6	36	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126