genome.fa.s1.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  108  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32322637--32323118	117	4.1	116	82	9	500	33	2	29	34	1.71
32322637--32323118	58	8.3	59	78	9	465	33	2	29	34	1.71
32322727--32323153	28	14.7	27	67	23	126	33	2	30	33	1.72
32324184--32324299	6	20.0	6	72	13	91	51	4	1	42	1.31
32324185--32324299	17	6.6	17	75	10	92	52	4	1	41	1.31
32324184--32324299	11	10.0	12	72	13	91	51	4	1	42	1.31
32324603--32325638	200	5.2	200	90	1	1515	20	23	20	35	1.96
32330632--32330669	18	2.1	18	100	0	76	10	21	28	39	1.86
32337830--32337934	30	3.5	30	72	19	92	39	0	21	38	1.60
32337826--32338356	58	9.1	57	79	9	459	34	2	29	34	1.71
32337856--32338349	117	4.2	115	82	8	489	34	2	28	33	1.71
32337922--32338257	30	11.6	26	67	19	136	33	2	29	33	1.73
32339569--32339684	6	20.0	6	72	13	91	51	4	1	42	1.31
32339570--32339684	17	6.6	17	75	10	92	52	4	1	41	1.31
32339569--32339684	11	10.0	12	72	13	91	51	4	1	42	1.31
32340461--32340501	2	20.5	2	100	0	82	51	0	0	48	1.00
32362902--32362956	3	18.3	3	92	0	92	1	36	0	61	1.06
32370493--32370532	20	2.0	20	100	0	80	20	5	20	55	1.62
32380038--32380136	31	3.5	27	84	9	74	43	3	3	50	1.33
32380056--32380150	6	16.0	6	73	18	83	46	4	0	49	1.21
32380056--32380129	17	4.6	16	85	11	98	41	4	0	54	1.19
32380046--32380150	11	9.5	11	71	12	63	45	3	0	49	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32380046--32380150	17	6.3	17	76	10	92	45	3	0	49	1.26
32380826--32380882	22	2.5	22	80	5	69	56	3	1	38	1.27
32380819--32380863	12	3.7	12	85	5	54	57	6	2	33	1.37
32381888--32382303	59	7.1	59	87	0	582	32	30	3	34	1.73
32381888--32382303	177	2.4	177	90	2	651	32	30	3	34	1.73
32394741--32394791	20	2.6	19	84	6	57	54	1	1	41	1.22
32398693--32398803	40	2.8	40	77	0	123	35	20	26	18	1.95
32402931--32402966	5	7.2	5	100	0	72	22	0	58	19	1.40
32425807--32425960	23	6.7	23	76	0	137	40	20	20	18	1.91
32425807--32425970	69	2.4	69	79	2	177	41	20	20	18	1.91
32425807--32425960	46	3.3	46	81	0	173	40	20	20	18	1.91
32433141--32433286	23	6.3	23	87	1	195	40	23	20	15	1.90
32435187--32435235	19	2.6	19	78	12	57	36	0	6	57	1.24
32436038--32436067	16	1.9	16	93	6	53	13	13	3	70	1.30
32436033--32436093	22	2.8	22	85	7	72	13	11	3	72	1.24
32437630--32437680	21	2.4	21	80	0	57	45	15	13	25	1.83
32442757--32442796	21	2.0	21	90	5	64	17	7	0	75	1.03
32445500--32445569	19	3.3	20	78	17	72	41	0	4	54	1.20
32451273--32451308	10	3.7	10	88	3	56	0	22	0	77	0.76
32451273--32451308	15	2.5	14	90	4	54	0	22	0	77	0.76
32466951--32466980	13	2.2	14	94	5	53	43	33	0	23	1.54
32468837--32468882	23	2.0	23	91	0	74	47	8	4	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32470781--32470832	24	2.2	24	89	6	79	55	5	3	34	1.42
32472464--32472495	16	2.0	16	93	0	55	68	6	3	21	1.26
32475803--32475832	16	1.9	15	93	6	51	46	0	20	33	1.51
32483510--32483550	17	2.3	18	80	20	50	56	2	0	41	1.13
32484407--32484447	22	1.9	22	85	5	57	31	0	12	56	1.36
32501643--32501667	11	2.3	11	100	0	50	32	20	0	48	1.50
32518189--32518288	28	3.5	28	73	24	100	36	5	31	28	1.78
32518196--32518533	59	5.7	60	85	3	438	34	3	28	34	1.73
32518195--32518571	177	2.1	175	82	6	449	34	2	28	34	1.72
32520453--32520568	6	20.0	6	72	10	89	52	3	1	42	1.28
32520455--32520569	11	10.0	11	72	12	63	53	3	1	40	1.28
32520454--32520568	17	6.7	16	72	12	77	53	3	1	41	1.28
32520453--32520565	59	1.9	58	85	1	154	51	3	1	43	1.29
32526811--32526854	15	2.8	17	80	16	58	65	0	0	34	0.93
32528028--32528079	15	3.6	15	75	19	65	48	3	23	25	1.68
32528020--32528077	28	2.1	28	100	0	116	50	3	24	22	1.65
32528565--32528623	3	19.7	3	96	0	100	66	3	0	30	1.08
32530655--32530707	20	2.6	19	77	11	52	16	32	18	32	1.94
32534133--32534171	14	2.6	15	84	12	53	28	0	2	69	1.02
32534912--32534944	12	2.8	12	82	17	50	30	0	0	69	0.88
32534895--32534943	17	3.0	15	80	16	53	34	0	0	65	0.93
32536068--32536107	20	2.0	20	90	0	62	12	57	7	22	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32542035--32542063	14	2.1	14	100	0	58	72	6	6	13	1.26
32549191--32549301	55	2.0	55	100	0	222	25	21	10	42	1.85
32549891--32549915	6	4.2	6	100	0	50	16	16	16	52	1.76
32551951--32551993	6	7.0	6	89	5	50	51	48	0	0	1.00
32552144--32552198	24	2.3	24	78	15	60	45	10	38	5	1.63
32558567--32558621	24	2.2	26	87	6	78	36	1	1	60	1.18
32559260--32559454	97	2.0	98	88	1	293	35	16	20	28	1.94
32559578--32559618	14	2.9	14	77	22	50	68	4	9	17	1.35
32559578--32559625	15	3.3	15	78	21	57	68	4	8	18	1.31
32559695--32559773	30	2.7	30	79	16	78	32	3	29	34	1.75
32559695--32559791	29	3.3	29	78	16	78	36	4	28	30	1.76
32559754--32559859	29	3.6	29	85	3	115	36	4	25	33	1.77
32559783--32559859	30	2.6	29	89	2	109	37	3	24	33	1.74
32561749--32561828	6	13.7	6	83	10	94	55	3	0	41	1.18
32561749--32561839	17	5.6	17	82	10	109	56	4	0	39	1.20
32561750--32561813	30	2.1	30	100	0	128	54	3	0	42	1.16
32562334--32562869	39	13.7	39	75	5	445	25	22	30	22	1.99
32562297--32562925	78	8.1	78	85	1	697	24	21	30	23	1.99
32562334--32562866	196	2.7	195	77	10	469	24	22	30	22	1.99
32562297--32562907	39	15.7	38	71	9	245	24	21	30	23	1.99
32562973--32563013	14	2.9	14	77	22	50	68	4	9	17	1.35
32562973--32563020	15	3.3	15	78	21	57	68	4	8	18	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32563192--32563346	29	5.3	29	83	6	172	36	4	24	34	1.76
32565213--32565270	17	3.4	16	86	9	71	53	1	1	43	1.21
32565227--32565259	6	5.7	6	92	7	59	54	0	0	45	0.99
32573862--32573921	27	2.3	27	85	2	77	56	5	25	13	1.57
32574083--32574113	6	5.2	6	100	0	62	0	67	0	32	0.91
32574893--32575073	61	3.0	61	87	0	236	23	13	14	48	1.79
32582391--32582438	17	2.8	17	78	12	53	52	4	2	41	1.32
32582706--32582755	23	2.2	23	100	0	100	30	4	22	44	1.71
32585659--32585697	16	2.4	17	91	4	62	64	5	0	30	1.15
32601789--32601845	24	2.4	24	78	0	69	43	1	36	17	1.60
32606820--32606849	2	15.0	2	100	0	60	50	0	0	50	1.00
32607532--32607557	4	6.5	4	100	0	52	0	23	0	76	0.78
32609754--32609811	19	3.2	18	72	18	57	62	3	1	32	1.22
32611500--32611530	14	2.2	14	94	0	53	77	3	6	12	1.08
32612165--32612222	29	2.1	28	84	12	75	18	1	15	63	1.39
32613682--32613756	39	1.9	39	97	0	141	32	18	18	30	1.95
32617212--32617236	11	2.3	11	100	0	50	48	20	0	32	1.50
32617577--32617648	18	3.8	18	67	8	54	34	36	0	29	1.58
32622693--32622719	13	2.1	13	100	0	54	29	29	14	25	1.95
32628941--32629387	194	2.3	194	80	7	512	25	27	19	27	1.99
32635665--32635689	7	3.6	7	100	0	50	24	0	28	48	1.52
32636681--32636769	47	1.9	47	93	2	153	19	15	22	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32637862--32637902	21	2.0	22	85	9	59	36	19	2	41	1.65
32638383--32639201	408	2.0	408	99	0	1602	32	25	11	29	1.91
32645745--32646031	143	2.0	143	99	0	565	26	16	21	34	1.95
32646475--32646513	3	13.3	3	84	15	55	71	0	0	28	0.86
32647892--32647916	13	1.9	13	100	0	50	44	16	0	40	1.47
32648771--32648812	3	14.3	3	92	5	68	69	2	0	28	1.01
32649872--32649899	13	2.2	13	100	0	56	42	21	21	14	1.88
32650502--32650558	22	2.5	22	82	2	69	68	0	26	5	1.11
32655164--32655195	16	2.1	16	88	11	50	56	12	0	31	1.37
32668323--32668552	113	2.0	113	90	0	363	41	8	17	32	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126