genome.fa.s1.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  47  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14001999--14002514	57	9.0	57	78	9	458	50	12	16	21	1.77
14002267--14002353	38	2.4	36	82	5	95	54	13	13	18	1.72
14002236--14002413	94	1.9	94	90	3	286	50	13	16	19	1.78
14002314--14002514	27	7.2	29	86	4	245	48	13	18	19	1.81
14003084--14003131	20	2.5	19	83	6	62	35	0	0	64	0.94
14006979--14007047	28	2.4	29	79	11	81	66	4	0	28	1.10
14007005--14007076	19	3.8	19	72	18	62	62	2	0	34	1.10
14006970--14007029	30	2.0	29	87	3	84	68	5	0	26	1.10
14007057--14007144	20	4.3	20	66	11	52	61	4	2	31	1.28
14007830--14007869	18	2.2	19	86	13	57	60	5	7	27	1.45
14008224--14008257	15	2.3	15	94	0	59	73	0	2	23	0.97
14008521--14008609	29	3.0	31	75	15	89	32	3	4	59	1.34
14008691--14008748	29	2.0	29	83	16	75	27	1	8	62	1.35
14008709--14008754	20	2.2	21	88	3	67	28	2	8	60	1.38
14009479--14009549	24	3.0	24	87	0	106	26	11	5	56	1.56
14011461--14011520	24	2.5	24	86	0	93	26	15	10	48	1.76
14013912--14013980	36	1.9	36	87	0	102	47	1	1	49	1.19
14014044--14014073	14	2.1	14	100	0	60	16	26	6	50	1.70
14015092--14015169	38	2.1	38	90	0	120	55	1	0	43	1.08
14015167--14015192	11	2.4	11	100	0	52	50	0	0	50	1.00
14018658--14018709	6	8.7	6	81	8	52	46	1	36	15	1.57
14020794--14020818	9	2.8	9	100	0	50	20	12	12	56	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14020919--14022719	900	2.0	899	95	0	3233	32	17	20	29	1.96
14025763--14025814	21	2.7	20	75	19	56	63	1	34	0	1.06
14026028--14026175	75	2.0	75	86	0	206	45	18	21	14	1.85
14026306--14026341	17	2.2	17	90	5	56	19	11	11	58	1.62
14029043--14029080	19	2.0	19	100	0	76	26	31	15	26	1.96
14029958--14029992	17	1.9	18	88	11	54	51	11	0	37	1.38
14034724--14034753	14	2.1	14	93	0	51	70	3	6	20	1.25
14038807--14038836	7	4.3	7	100	0	60	56	0	0	43	0.99
14057968--14058040	22	3.3	22	86	7	103	6	5	21	65	1.37
14057968--14058051	44	1.9	44	87	0	123	7	4	21	66	1.35
14057983--14058051	22	3.2	20	78	13	66	7	4	20	68	1.32
14058048--14058097	23	2.2	23	88	0	73	14	0	16	70	1.18
14058012--14058085	34	2.2	34	83	9	89	10	1	21	66	1.30
14058048--14058152	24	4.4	23	73	13	70	10	2	18	68	1.31
14058036--14058152	12	9.9	12	69	10	62	10	2	18	68	1.30
14058115--14058166	20	2.3	23	81	15	65	7	1	23	67	1.27
14059147--14059188	21	2.0	21	85	4	57	14	19	9	57	1.64
14059802--14059842	21	2.1	20	86	13	59	51	0	0	48	1.00
14059811--14059851	21	2.0	21	85	0	55	43	2	2	51	1.28
14059899--14059938	19	2.2	19	86	4	55	50	2	0	47	1.14
14060383--14060435	20	2.6	22	80	17	69	30	0	3	66	1.10
14060368--14060427	30	2.0	31	87	9	88	30	0	3	66	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14061559--14061594	17	2.0	18	89	10	56	50	5	2	41	1.40
14062125--14062162	20	2.0	20	89	5	60	60	0	26	13	1.33
14063107--14063138	14	2.3	14	94	0	55	15	9	6	68	1.36
14069440--14069478	20	2.0	20	85	10	53	53	28	5	12	1.60
14069726--14069783	3	19.7	3	96	3	109	34	0	0	65	0.93
14072128--14072179	18	2.8	18	75	13	52	75	0	21	3	0.97
14075317--14075405	29	3.0	29	81	5	79	47	12	6	33	1.68
14081387--14081428	21	2.0	21	95	0	75	45	11	14	28	1.80
14089774--14089818	16	2.9	17	78	15	53	55	0	4	40	1.20
14092576--14092619	21	2.1	21	83	8	54	29	29	13	27	1.94
14092594--14092746	70	2.2	71	91	1	245	32	24	20	22	1.98
14096728--14096759	12	2.7	12	95	0	55	46	0	12	40	1.42
14103459--14103532	6	12.5	6	81	8	62	48	1	22	27	1.59
14103459--14103509	18	2.8	18	84	0	75	50	0	25	23	1.49
14108095--14108221	30	4.2	29	74	6	110	37	25	2	34	1.69
14124550--14124597	17	3.0	15	80	14	51	70	0	29	0	0.87
14124537--14124594	30	1.9	30	86	6	82	70	0	29	0	0.87
14140185--14140227	18	2.2	20	88	8	63	65	18	2	13	1.38
14141133--14141260	30	4.3	31	85	4	165	37	23	4	34	1.76
14141148--14141260	61	1.9	59	89	7	174	38	22	4	35	1.74
14143174--14143216	21	2.0	21	90	0	68	39	0	6	53	1.28
14149030--14149099	35	2.0	35	88	0	104	25	5	22	45	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14153680--14153736	24	2.5	22	78	15	62	49	0	1	49	1.11
14153836--14153910	35	2.1	35	95	0	132	36	10	4	49	1.56
14162311--14162434	62	2.0	63	90	1	196	41	16	19	22	1.89
14179096--14179149	3	18.0	3	76	0	54	64	24	1	9	1.32
14179076--14179148	6	12.3	6	91	1	85	67	16	1	15	1.31
14188798--14188852	27	2.0	27	82	6	67	50	1	3	43	1.30
14189392--14189441	17	2.9	17	78	0	64	32	32	20	16	1.94
14190104--14190154	24	2.1	24	89	7	77	17	17	37	27	1.93
14192862--14192902	17	2.3	18	83	8	57	34	4	7	53	1.50
14193726--14193833	3	36.0	3	69	10	51	55	0	4	39	1.21
14193726--14193832	9	11.6	9	73	13	83	55	0	4	40	1.21
14193717--14193832	39	3.0	39	70	18	109	54	0	6	39	1.25
14194777--14194962	58	3.2	58	76	6	169	34	24	4	37	1.75
14198769--14198798	15	2.1	15	93	6	53	30	6	23	40	1.80
14200907--14200964	27	2.2	27	87	9	84	24	5	5	65	1.34
14202039--14202103	27	2.4	27	86	0	85	33	21	32	12	1.90
14202291--14202344	16	3.2	16	80	15	65	53	0	46	0	1.00
14202291--14202344	9	6.4	9	77	14	62	53	0	46	0	1.00
14202299--14202346	25	1.9	25	91	0	78	52	0	47	0	1.00
14202303--14202356	25	2.2	25	82	0	63	57	0	42	0	0.98
14202686--14202728	21	2.1	21	86	4	61	25	2	13	58	1.48
14202700--14203145	95	4.8	94	89	7	687	37	2	12	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14202832--14202975	45	3.2	45	66	21	127	43	2	9	44	1.51
14202700--14203145	187	2.4	186	91	4	722	37	2	12	47	1.54
14203333--14203382	16	3.2	16	71	21	52	58	6	2	34	1.34
14203414--14203515	30	3.4	30	64	9	73	37	4	11	46	1.62
14204688--14204771	43	2.0	43	80	4	98	29	13	9	47	1.74
14205255--14205288	12	2.8	12	91	8	52	52	0	44	2	1.16
14205394--14205440	21	2.2	21	92	0	76	21	36	17	25	1.94
14208668--14208705	4	9.2	4	88	5	58	0	31	0	68	0.90
14208671--14208706	13	2.8	13	91	4	56	0	33	0	66	0.92
14208875--14208931	27	2.1	27	90	0	87	10	33	24	31	1.89
14213511--14213615	20	5.2	20	74	0	84	28	20	37	13	1.91
14213508--14213615	40	2.7	40	75	0	108	28	21	37	12	1.90
14219537--14219633	31	3.2	30	76	7	90	25	7	9	57	1.55
14219789--14219973	59	3.2	59	81	5	189	48	12	14	24	1.79
14219819--14219973	57	2.7	58	80	6	172	47	12	14	25	1.79
14221181--14221215	4	8.5	4	93	6	61	77	0	22	0	0.78
14221176--14221215	17	2.3	17	95	4	71	75	0	25	0	0.81
14224117--14224181	17	3.8	17	77	6	60	38	0	6	55	1.25
14225682--14226332	201	3.2	200	87	1	935	36	22	22	18	1.95
14225682--14226288	200	3.0	200	89	0	917	36	22	22	18	1.95
14226647--14226707	28	2.2	29	79	8	72	37	0	4	57	1.20
14226761--14226829	13	5.0	14	78	8	70	46	23	18	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14226760--14226829	27	2.6	27	90	2	104	45	22	18	12	1.83
14228467--14228564	30	3.3	29	75	23	114	30	30	4	34	1.76
14228467--14228783	59	5.2	59	77	13	313	31	30	5	32	1.80
14228507--14228641	67	2.0	68	97	1	254	31	31	4	32	1.78
14228585--14228676	30	3.1	28	72	14	87	35	30	3	30	1.74
14228467--14228699	126	1.8	128	89	3	373	30	32	5	31	1.80
14230178--14230254	37	2.1	37	100	0	154	20	24	24	29	1.99
14232858--14232886	12	2.3	13	88	11	51	65	0	0	34	0.93
14232928--14232967	4	9.8	4	89	5	53	5	20	0	75	0.99
14234039--14234063	12	2.1	12	100	0	50	40	16	28	16	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126