genome.fa.s1.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  36  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10909495--10909524	14	2.1	14	93	0	51	73	3	6	16	1.18
10909526--10909568	19	2.3	19	84	8	52	58	4	0	37	1.19
10909772--10909820	24	2.0	25	92	7	84	51	10	0	38	1.36
10911205--10911283	37	2.1	37	97	0	149	44	10	16	29	1.80
10911697--10911734	19	2.1	19	90	5	60	68	5	2	23	1.23
10914758--10914788	2	15.5	2	100	0	62	51	0	0	48	1.00
10917001--10917059	28	2.0	29	83	6	75	59	3	0	37	1.14
10916982--10917065	37	2.3	35	78	15	89	54	3	0	41	1.17
10927771--10927812	14	3.0	14	83	10	59	69	4	7	19	1.31
10927937--10928160	30	7.5	30	72	7	111	37	3	23	36	1.71
10927995--10928157	60	2.7	60	82	4	179	36	1	22	38	1.65
10927965--10928158	30	6.5	30	75	3	133	36	3	23	37	1.71
10929227--10929275	22	2.4	22	87	12	70	38	0	0	61	0.96
10929918--10930041	6	22.0	6	71	12	57	58	3	1	36	1.24
10929936--10930023	11	7.9	11	71	16	56	57	3	2	36	1.28
10929917--10930041	17	7.4	17	82	1	153	58	3	1	36	1.24
10929917--10930040	34	3.7	34	85	2	178	58	3	1	37	1.24
10930579--10931109	39	13.7	39	72	7	294	23	18	32	25	1.97
10930618--10930715	38	2.5	39	88	3	153	24	19	28	27	1.98
10930570--10930779	115	1.8	116	84	1	287	22	18	31	27	1.97
10930744--10931032	117	2.5	117	85	2	330	23	18	32	24	1.97
10931377--10932144	99	7.8	97	72	9	252	18	28	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10931376--10932260	197	4.5	196	80	5	874	18	29	17	35	1.93
10931377--10932260	50	18.0	49	73	7	508	18	29	17	35	1.93
10934085--10934122	12	3.2	12	81	7	51	0	21	0	78	0.74
10934096--10934128	16	2.1	16	94	5	59	0	21	0	78	0.75
10934180--10934212	6	5.7	6	96	3	59	0	12	0	87	0.53
10936047--10936801	377	2.0	377	99	0	1501	37	16	13	32	1.88
10938587--10938799	29	7.3	29	74	11	134	36	2	24	36	1.70
10938589--10938833	59	4.2	59	73	14	184	35	2	24	36	1.71
10938718--10938819	30	3.4	30	79	2	107	37	1	21	39	1.65
10938589--10938833	29	8.4	29	75	13	127	35	2	24	36	1.71
10939885--10939936	22	2.4	22	87	9	72	38	0	0	61	0.96
10940577--10940672	17	5.6	17	79	4	104	56	4	2	37	1.30
10940577--10940678	6	17.7	6	68	14	54	54	3	2	38	1.34
10940581--10940675	34	2.8	33	85	3	127	56	4	3	35	1.34
10944148--10944244	40	2.4	40	87	0	149	34	19	17	28	1.95
10956271--10956320	26	1.9	26	84	8	66	44	24	2	30	1.65
10956758--10956983	52	4.4	52	78	8	214	31	20	15	31	1.94
10970910--10970959	18	2.8	18	87	0	73	28	22	24	26	1.99
10975558--10975701	40	3.6	40	81	1	137	24	19	18	38	1.93
10981563--10981734	26	6.7	26	78	5	161	34	17	21	26	1.95
10981563--10981705	77	1.8	77	89	1	223	34	18	21	25	1.96
10988755--10989137	26	14.7	26	79	6	314	34	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10988743--10989139	52	7.6	52	81	6	394	34	18	21	25	1.96
10988743--10989137	78	5.1	78	85	1	479	34	18	21	25	1.96
10993726--10993750	12	2.1	12	100	0	50	76	0	0	24	0.80
10993725--10993758	17	1.9	18	88	5	52	76	0	0	23	0.79
10996452--10996640	39	4.8	39	79	5	166	36	17	20	25	1.94
11004656--11004694	17	2.2	17	86	4	51	5	23	2	69	1.21
11015235--11015346	39	2.8	40	86	4	156	39	18	15	26	1.90
11015235--11015359	39	3.2	39	84	0	133	39	19	14	27	1.90
11034047--11034113	33	2.2	29	71	26	66	29	5	4	59	1.41
11039381--11039664	39	7.3	39	77	10	224	26	18	19	36	1.94
11039521--11039681	78	2.1	78	83	4	209	26	18	20	34	1.96
11042758--11042797	21	1.9	21	84	0	53	57	5	5	32	1.42
11045386--11045425	21	1.9	21	84	0	53	57	5	5	32	1.42
11048201--11048243	22	2.0	22	85	0	59	55	4	4	34	1.41
11050985--11051025	22	2.0	21	86	13	59	58	4	4	31	1.40
11053813--11053853	22	1.9	22	90	5	66	56	4	4	34	1.42
11056445--11056484	22	2.0	21	85	14	57	57	5	5	32	1.42
11059268--11059307	21	1.9	21	84	0	53	57	5	5	32	1.42
11060812--11060898	43	2.0	43	100	0	174	29	11	28	29	1.92
11064389--11064754	59	6.3	58	78	11	278	34	5	25	33	1.79
11064529--11064758	29	7.9	29	79	10	222	33	3	26	36	1.73
11065869--11065903	18	1.9	18	88	11	54	31	0	2	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11065857--11065903	10	5.1	9	78	14	51	36	0	2	61	1.08
11066604--11066628	13	1.9	13	100	0	50	28	8	24	40	1.83
11066652--11066734	6	14.5	6	75	14	86	54	1	1	43	1.16
11066650--11066732	11	7.4	11	76	9	78	53	1	1	44	1.16
11066656--11066734	17	4.6	17	85	7	99	54	1	1	43	1.16
11066652--11066734	23	3.7	23	79	6	98	54	1	1	43	1.16
11069962--11069994	16	2.0	17	88	5	50	27	12	0	60	1.32
11071149--11071191	22	2.0	22	85	0	59	53	4	6	34	1.49
11073008--11073082	17	4.5	16	75	18	55	38	1	4	56	1.27
11073006--11073083	32	2.3	35	87	12	119	38	1	3	56	1.26
11075049--11075522	30	16.1	30	75	10	372	37	24	1	35	1.66
11075070--11075522	59	7.6	59	81	10	366	37	24	1	35	1.66
11075070--11075548	29	16.2	29	74	11	300	37	24	2	36	1.68
11075294--11075508	119	1.8	116	89	5	333	37	26	1	35	1.65
11087448--11087871	98	4.3	98	86	3	505	37	17	25	19	1.93
11087843--11088720	100	8.8	100	87	2	1212	39	19	23	17	1.92
11087743--11088714	300	3.2	298	86	4	1221	39	19	23	17	1.92
11089152--11089223	17	4.4	16	76	16	58	40	1	4	54	1.28
11089152--11089223	32	2.2	34	90	9	114	40	1	4	54	1.28
11094306--11094340	16	2.2	16	100	0	70	48	11	0	40	1.39
11094377--11094421	20	2.2	20	88	8	63	40	0	2	57	1.11
11098554--11098597	23	1.9	23	85	0	61	54	4	6	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11098675--11098707	2	16.5	2	100	0	66	48	0	0	51	1.00
11103555--11103588	6	5.7	6	96	0	59	70	29	0	0	0.87
11106893--11106958	24	2.8	24	86	4	80	28	25	19	25	1.99
11110618--11110649	13	2.4	14	90	10	50	34	0	0	65	0.93
11110615--11110655	16	2.5	17	88	11	59	36	0	0	63	0.95
11110615--11110661	23	2.0	23	84	8	60	40	0	0	59	0.97
11111160--11112684	509	3.0	509	93	1	2592	32	22	13	30	1.93
11113945--11114019	21	3.6	21	73	7	62	32	22	13	32	1.93
11121354--11121401	22	2.2	22	84	0	60	56	4	6	33	1.44
11123739--11123925	40	4.7	40	84	7	220	35	19	17	27	1.95
11123739--11123893	79	2.0	79	87	5	224	35	20	18	26	1.95
11126106--11126147	22	1.9	22	85	0	57	59	4	2	33	1.31
11127998--11128413	29	14.4	29	76	11	288	35	26	2	34	1.72
11133066--11133103	15	2.5	15	87	12	51	76	2	21	0	0.91
11133973--11134085	18	6.7	18	74	13	105	81	3	15	0	0.82
11133977--11134081	8	12.5	8	76	17	81	81	3	14	0	0.82
11133973--11134087	9	12.3	9	80	12	83	80	3	15	0	0.84
11133976--11134087	20	5.3	22	74	20	89	81	3	15	0	0.83
11133948--11134086	30	4.4	32	76	13	110	79	3	15	1	0.93
11135019--11135417	50	8.1	50	80	3	378	33	18	30	17	1.94
11135016--11135396	99	3.9	99	78	9	400	33	17	31	17	1.94
11135218--11135347	48	2.7	49	84	9	160	34	14	31	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11135019--11135397	197	1.9	199	83	5	491	33	17	31	17	1.93
11135031--11135454	99	4.3	98	73	10	306	34	18	29	17	1.94
11135080--11135463	197	1.9	197	82	4	470	34	18	28	18	1.94
11135653--11135747	41	2.3	41	89	3	138	31	22	16	29	1.96
11135735--11136111	39	9.7	39	70	13	160	23	28	21	26	1.99
11135814--11136161	117	3.0	117	76	8	341	23	29	21	26	1.99
11135737--11136139	77	5.2	78	75	10	297	23	29	20	26	1.99
11138282--11138643	29	12.4	29	78	13	304	36	27	1	33	1.68
11138315--11138628	57	5.4	58	83	8	367	35	28	2	33	1.70
11138283--11138646	86	4.2	83	79	10	358	36	27	1	33	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126