genome.fa.s1.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  113  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33622955--33623078	30	4.3	27	71	15	79	32	4	30	33	1.76
33622741--33623203	29	15.9	28	70	14	162	32	4	26	36	1.76
33625285--33625666	208	1.8	209	85	2	536	21	19	19	39	1.93
33625517--33625886	172	2.2	173	88	2	532	22	21	17	38	1.93
33625944--33626033	39	2.3	38	78	1	117	30	22	23	24	1.99
33625986--33626189	78	2.6	78	79	6	209	25	22	28	22	1.99
33626041--33626170	39	3.3	39	68	15	106	26	20	32	20	1.97
33628437--33628477	21	2.0	21	85	9	57	4	7	4	82	0.93
33632552--33632914	29	12.5	28	72	16	253	30	5	26	37	1.78
33632586--33632922	87	3.9	86	88	4	437	29	5	27	37	1.78
33632605--33633098	29	17.0	28	71	14	204	31	3	26	37	1.73
33635046--33635096	3	17.0	3	100	0	102	33	0	0	66	0.92
33636811--33636855	24	1.9	24	86	4	65	66	0	0	33	0.92
33638889--33638962	22	3.0	26	64	22	68	40	16	10	32	1.83
33638827--33639009	48	3.5	51	85	9	221	42	17	8	31	1.79
33641063--33641239	31	6.0	28	82	11	178	37	3	23	34	1.74
33641069--33641239	60	2.9	58	82	8	184	38	3	22	35	1.72
33641065--33641235	90	1.9	88	84	8	231	38	4	23	34	1.74
33641064--33641260	30	6.6	28	82	10	155	37	4	23	34	1.76
33642224--33642309	44	2.0	44	90	2	138	29	17	20	32	1.96
33642564--33642735	49	3.5	50	73	10	138	18	28	13	38	1.89
33644000--33644063	5	12.6	5	80	16	62	0	18	1	79	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33644000--33644063	11	5.7	11	78	18	62	0	18	1	79	0.81
33644000--33644063	25	2.5	26	78	21	80	0	18	1	79	0.81
33644004--33644067	16	4.1	16	73	15	62	0	21	1	76	0.87
33644995--33645028	18	1.9	18	88	5	52	2	20	0	76	0.92
33645022--33645046	13	1.9	13	100	0	50	12	24	0	64	1.27
33647704--33647754	25	2.0	25	100	0	102	31	19	25	23	1.98
33649013--33649254	29	8.3	29	73	9	118	35	2	24	37	1.69
33649082--33649255	30	5.9	28	76	11	102	35	2	27	34	1.72
33649076--33649249	59	2.9	59	78	2	161	35	2	26	35	1.72
33649582--33649631	22	2.2	22	85	3	64	40	22	0	38	1.54
33650597--33650636	21	2.0	20	90	5	62	52	0	0	47	1.00
33650597--33650643	21	2.2	21	85	7	60	46	0	4	48	1.21
33661155--33661221	20	3.3	20	77	8	64	53	2	7	35	1.44
33663565--33663713	76	1.9	77	90	1	237	32	11	18	36	1.87
33666299--33666349	21	2.4	22	84	12	63	31	9	23	35	1.87
33666390--33666441	20	2.6	19	82	11	68	30	13	23	32	1.93
33672278--33672313	18	2.1	18	89	5	56	19	5	11	63	1.46
33674441--33674478	16	2.3	16	90	4	58	44	0	2	52	1.14
33674785--33675423	48	12.6	48	79	11	559	22	20	23	33	1.97
33674918--33675270	105	3.5	105	82	8	451	22	19	23	35	1.96
33675027--33675423	150	2.6	151	90	4	602	21	20	22	35	1.96
33675178--33675309	45	2.8	44	81	15	135	21	22	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33681227--33681288	31	2.0	31	100	0	124	48	16	12	22	1.80
33695410--33695438	13	2.3	13	94	5	51	86	0	13	0	0.58
33740377--33740429	12	4.4	12	80	15	56	56	0	0	43	0.99
33743218--33743281	28	2.2	31	86	10	91	57	3	7	31	1.43
33751783--33752155	29	12.6	29	82	10	368	32	4	27	35	1.76
33766838--33766878	15	2.8	15	88	3	57	65	4	0	29	1.13
33768127--33768154	13	2.2	13	100	0	56	50	0	0	50	1.00
33770676--33770733	26	2.2	26	81	6	73	58	5	1	34	1.30
33773526--33773601	25	3.0	25	83	9	84	21	18	5	55	1.62
33773553--33773602	25	2.0	25	96	0	91	26	16	6	52	1.66
33774040--33774129	27	3.3	27	95	0	153	18	33	31	16	1.94
33774287--33774327	15	2.9	14	88	3	55	24	0	4	70	1.06
33774290--33774325	18	2.1	17	89	5	54	22	0	5	72	1.05
33775879--33775909	8	3.8	8	91	8	53	51	0	0	48	1.00
33777248--33777303	21	2.8	19	79	12	67	46	30	0	23	1.53
33777977--33778020	20	2.2	20	88	8	63	61	4	0	34	1.16
33777997--33778060	23	2.8	24	77	13	71	62	1	0	35	1.05
33778004--33778072	35	2.0	36	83	11	90	60	1	0	37	1.06
33782128--33782153	2	13.0	2	100	0	52	50	0	0	50	1.00
33784287--33784392	10	10.4	10	67	14	56	30	2	2	64	1.22
33784320--33784391	10	7.6	9	73	22	58	29	4	1	65	1.20
33784341--33784394	21	2.5	22	78	6	65	25	5	0	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33791277--33791340	23	2.8	23	77	15	62	64	1	3	31	1.19
33791325--33791385	25	2.5	24	89	5	95	65	0	0	34	0.93
33791332--33791384	25	2.1	25	96	0	97	67	0	0	32	0.91
33795482--33795522	19	2.2	19	86	4	57	14	0	24	60	1.34
33795722--33795882	61	2.7	61	75	7	168	49	11	13	25	1.76
33797753--33797779	14	1.9	14	100	0	54	37	3	7	51	1.48
33801181--33801219	6	6.5	6	87	0	51	46	0	30	23	1.53
33801321--33801421	38	2.6	40	71	10	100	21	19	28	29	1.98
33806011--33806045	18	1.9	18	88	11	54	34	5	17	42	1.73
33809751--33809790	16	2.6	16	84	4	55	40	0	0	60	0.97
33813104--33813130	12	2.2	12	100	0	54	25	22	7	44	1.79
33815652--33815878	89	2.6	87	81	6	260	37	14	9	39	1.79
33816003--33816105	47	2.2	47	79	5	111	66	5	1	26	1.25
33816338--33816378	18	2.3	17	84	12	55	26	4	0	68	1.10
33816304--33816397	27	3.3	28	80	11	93	30	4	1	63	1.20
33816382--33816427	20	2.2	21	84	3	58	43	2	0	54	1.12
33816394--33816442	20	2.5	20	80	9	55	42	0	0	57	0.99
33820942--33820985	23	1.9	23	86	9	63	54	4	6	34	1.47
33821370--33821453	22	3.9	22	85	1	107	20	9	30	39	1.84
33822844--33823099	128	2.0	127	98	0	494	22	16	23	37	1.93
33824458--33824531	36	2.1	36	100	0	148	36	8	16	39	1.78
33826211--33826246	18	2.0	18	94	0	63	44	0	2	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33826296--33826320	7	3.6	7	100	0	50	28	0	0	72	0.86
33828638--33828704	30	2.2	30	89	5	100	16	25	29	28	1.97
33831763--33831808	23	2.0	23	82	0	56	60	21	0	17	1.35
33841903--33841952	23	2.2	22	79	13	57	58	4	2	36	1.29
33864613--33864643	16	1.9	16	100	0	62	19	12	12	54	1.70
33870089--33870128	21	2.0	21	85	5	55	25	12	10	52	1.70
33870099--33870210	40	2.8	38	77	14	109	22	10	11	55	1.66
33870094--33870215	20	6.1	20	71	16	83	23	11	10	54	1.67
33870401--33870506	56	1.9	55	88	5	160	50	2	8	38	1.48
33874655--33874699	20	2.2	19	84	11	54	22	13	0	64	1.28
33875379--33875429	20	2.5	20	87	6	68	27	17	7	47	1.75
33889593--33889675	21	4.3	20	70	17	61	26	3	16	53	1.60
33889602--33889679	18	4.3	19	69	18	58	26	3	16	52	1.61
33889564--33889679	55	2.1	55	93	0	196	25	4	15	54	1.60
33889999--33890050	21	2.4	22	87	9	72	38	0	0	61	0.96
33891675--33891716	21	2.0	21	85	4	57	33	7	23	35	1.82
33898102--33898154	23	2.2	24	83	6	63	35	1	0	62	1.06
33905759--33905788	13	2.4	13	94	5	53	16	10	6	66	1.41
33908837--33908878	16	2.7	16	77	3	50	73	4	2	19	1.12
33909976--33910032	30	1.9	30	100	0	114	29	12	8	49	1.70
33912768--33912851	21	4.0	21	80	11	93	47	14	27	10	1.77
33915820--33915865	24	1.9	24	86	0	65	56	21	10	10	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33920760--33920802	17	2.4	18	81	11	54	41	2	2	53	1.26
33931010--33931048	20	2.0	20	85	10	53	38	25	7	28	1.83
33939546--33939581	5	7.0	5	87	6	54	77	0	22	0	0.76
33946392--33946431	4	10.0	4	94	0	71	22	0	25	52	1.47
33955373--33955617	122	2.0	122	100	0	490	41	15	11	31	1.83
33956447--33956691	135	1.8	135	81	6	307	32	9	19	38	1.83
33968620--33968663	14	2.8	16	80	16	56	52	0	0	47	1.00
33970259--33970296	14	2.7	14	84	8	51	2	28	0	68	1.03
33972311--33972371	29	2.1	28	82	8	70	50	4	8	36	1.54
33977191--33977474	155	1.9	154	82	6	362	44	5	8	42	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126