genome.fa.s1.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  116  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34768688--34768727	6	6.7	6	88	0	62	32	30	35	2	1.71
34769290--34769346	14	4.1	14	76	10	55	49	24	0	26	1.51
34769322--34769363	22	1.9	22	85	0	57	50	19	0	30	1.48
34769344--34769457	14	7.8	14	65	8	57	45	19	0	34	1.56
34775341--34775418	20	4.0	20	72	9	70	25	0	6	67	1.14
34775295--34775418	29	4.2	29	74	11	92	29	0	4	64	1.20
34775381--34775424	21	2.2	20	87	4	61	27	0	6	65	1.17
34775419--34775467	25	2.0	24	84	4	62	53	0	2	44	1.12
34777050--34777092	16	2.8	15	83	13	52	27	0	18	53	1.45
34778406--34778446	21	2.0	21	85	0	55	36	17	7	39	1.77
34779154--34779386	52	4.5	52	88	2	308	29	24	14	31	1.95
34782191--34782220	11	2.7	11	100	0	60	50	0	0	50	1.00
34790197--34790240	19	2.2	20	84	4	54	70	0	2	27	0.99
34790205--34790247	19	2.2	20	84	12	54	62	0	2	34	1.08
34790557--34790600	22	2.0	22	86	8	63	36	0	0	63	0.95
34790620--34791387	381	2.0	381	98	0	1473	40	14	9	35	1.79
34798315--34798359	3	15.0	3	90	0	72	71	0	28	0	0.87
34799083--34799378	99	3.0	99	97	1	553	28	23	8	39	1.84
34801682--34801732	3	17.0	3	91	0	84	66	0	31	1	1.03
34803086--34803120	2	17.5	2	100	0	70	51	48	0	0	1.00
34806368--34806414	24	1.9	25	82	4	60	61	23	2	12	1.42
34806563--34806619	28	2.0	28	96	0	105	63	10	5	21	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34806543--34806657	24	4.6	24	83	8	122	55	9	10	24	1.63
34808511--34808569	24	2.4	25	88	8	95	52	10	10	27	1.67
34809761--34809844	20	4.2	20	75	11	73	5	4	20	69	1.29
34809757--34809838	18	4.2	19	76	13	85	6	3	19	70	1.23
34809752--34809883	60	2.2	60	82	8	162	8	4	18	68	1.33
34809846--34809898	12	4.5	12	78	4	63	7	3	18	69	1.28
34816379--34816443	7	8.5	8	75	13	57	66	0	0	33	0.92
34816383--34816441	22	2.6	23	76	10	59	67	0	0	32	0.91
34822435--34822502	28	2.4	28	80	11	84	47	2	0	50	1.16
34822582--34822614	3	11.0	3	100	0	66	66	0	0	33	0.92
34828191--34828372	91	2.0	90	89	4	276	49	10	18	21	1.77
34841456--34841480	12	2.1	12	100	0	50	60	8	0	32	1.26
34846716--34846848	9	14.1	9	68	20	60	33	6	0	59	1.27
34846765--34846849	29	3.0	29	75	20	81	35	7	0	57	1.26
34846765--34846848	19	4.5	18	73	15	73	34	7	0	58	1.26
34847838--34847896	22	2.5	24	75	25	63	33	1	3	61	1.23
34847869--34847945	39	2.0	39	92	0	127	22	9	1	67	1.26
34847867--34847942	19	3.9	19	76	6	64	23	7	1	67	1.25
34849763--34849797	15	2.3	15	90	5	52	34	2	5	57	1.37
34854788--34854863	38	2.0	38	90	7	120	13	34	9	43	1.75
34854788--34854863	37	2.0	37	90	7	118	13	34	9	43	1.75
34856534--34856579	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34858232--34858304	18	3.9	18	72	12	58	31	1	4	63	1.22
34868476--34868520	21	2.2	20	84	4	54	66	17	6	8	1.40
34869233--34869266	15	2.3	15	100	0	68	58	5	8	26	1.51
34871814--34871859	19	2.3	20	85	10	60	54	8	0	36	1.32
34874919--34874955	19	1.9	19	94	0	65	24	5	8	62	1.44
34878854--34878899	7	6.6	7	87	7	67	67	0	4	28	1.10
34884249--34884308	31	2.0	31	90	3	95	65	5	13	16	1.44
34886673--34886702	3	10.0	3	100	0	60	66	0	33	0	0.92
34902387--34902424	12	2.8	13	88	11	51	60	0	2	36	1.11
34909381--34909414	2	17.0	2	100	0	68	50	0	0	50	1.00
34915502--34915558	27	2.1	27	83	6	71	63	1	1	33	1.15
34915588--34915691	55	1.9	55	82	4	129	50	2	2	43	1.31
34919495--34919527	16	2.0	17	88	5	50	30	9	0	60	1.27
34920287--34920355	27	2.5	25	78	19	75	27	5	1	65	1.24
34920297--34920354	30	2.0	29	86	10	82	27	6	1	63	1.29
34933320--34933348	14	2.1	14	100	0	58	27	0	0	72	0.85
34935410--34935463	20	2.7	20	82	0	54	31	25	9	33	1.88
34937318--34937364	25	2.0	25	83	8	62	48	10	10	29	1.71
34939118--34939173	16	3.5	16	85	4	69	33	3	32	30	1.75
34939346--34939508	58	2.7	59	84	8	206	53	0	1	44	1.12
34946410--34946450	20	2.0	20	100	0	82	46	9	0	43	1.36
34946444--34946514	24	3.1	23	77	6	81	54	1	0	43	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34946444--34946506	22	2.8	22	80	4	63	57	0	0	42	0.99
34950145--34950190	6	7.7	6	95	0	83	32	2	0	65	1.05
34951326--34951363	18	2.1	18	85	9	51	50	15	7	26	1.72
34951661--34951733	31	2.4	31	95	0	128	23	20	13	42	1.88
34955524--34955568	20	2.2	20	80	0	54	17	2	28	51	1.58
34956621--34956676	29	2.1	27	83	12	71	46	5	0	48	1.25
34968867--34968902	2	18.0	2	100	0	72	50	0	0	50	1.00
34969005--34969038	14	2.4	14	100	0	68	32	29	17	20	1.96
34972092--34972141	22	2.2	23	86	10	68	46	0	4	50	1.20
34976797--34976832	16	2.2	16	90	5	54	27	8	5	58	1.50
34978513--34978537	7	3.6	7	100	0	50	76	0	0	24	0.80
34978491--34978543	15	3.7	14	78	12	54	67	1	3	26	1.17
34979020--34979063	18	2.4	19	76	3	54	31	4	11	52	1.57
34985684--34985766	25	3.2	25	64	18	60	46	6	9	37	1.61
34985677--34985764	28	3.2	28	63	23	69	44	6	11	37	1.67
34986212--34986261	12	4.2	12	78	0	55	24	20	40	16	1.91
34986217--34986257	18	2.3	18	86	0	55	24	19	39	17	1.92
34992653--34992696	11	4.0	11	82	8	54	43	0	4	52	1.22
34992656--34992718	17	3.8	17	79	8	67	41	0	4	53	1.22
34992662--34992738	27	2.8	28	76	5	77	42	2	5	49	1.39
34993904--34993944	21	2.0	21	85	0	55	58	2	17	21	1.50
34993925--34993969	23	1.9	23	86	4	63	57	8	15	17	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34994730--34994824	30	3.2	30	70	14	97	34	33	3	28	1.73
34994685--34994912	59	3.9	59	87	0	296	31	32	3	32	1.76
34994704--34994855	29	5.2	29	71	14	114	34	30	3	31	1.74
34998000--34998057	6	9.7	6	84	0	53	20	20	39	18	1.92
34998000--34998057	12	4.8	12	82	0	62	20	20	39	18	1.92
34999404--34999454	19	2.8	18	76	8	50	52	3	1	41	1.31
35008305--35008385	26	3.1	25	83	10	99	30	6	8	54	1.56
35009528--35009621	49	1.9	48	95	2	170	39	7	2	51	1.42
35009581--35009617	19	2.0	19	89	5	58	40	5	0	54	1.24
35020390--35020435	17	2.8	16	84	12	58	47	6	4	41	1.49
35020423--35020469	18	2.6	19	76	10	53	55	0	2	42	1.12
35027673--35027712	21	1.9	21	100	0	80	37	0	0	62	0.95
35027672--35027716	21	2.2	20	88	11	74	37	0	0	62	0.96
35027984--35028019	14	2.5	14	86	4	54	30	5	0	63	1.17
35028807--35028854	3	16.0	3	100	0	96	66	0	0	33	0.92
35031121--35031368	127	2.0	126	93	0	424	39	9	23	27	1.86
35067139--35067177	20	2.0	20	84	0	51	30	7	0	61	1.24
35075721--35075783	31	2.0	31	93	0	108	33	14	11	41	1.81
35081036--35081088	27	2.0	27	100	0	106	22	22	11	43	1.85
35081644--35081695	25	2.1	25	89	7	79	26	1	9	61	1.38
35081965--35082003	5	7.6	5	82	5	51	58	2	2	35	1.25
35088317--35088466	23	6.4	23	78	11	78	12	24	22	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35088335--35088438	45	2.3	46	78	8	115	12	23	25	38	1.90
35091259--35091329	36	2.0	36	97	0	133	38	7	25	29	1.82
35092016--35092049	15	2.2	16	94	5	61	29	0	0	70	0.87
35093133--35093178	17	2.5	19	82	10	60	54	4	2	39	1.32
35093091--35093228	71	2.0	71	85	5	192	52	5	2	39	1.38
35094514--35094544	16	1.9	16	93	0	53	77	6	6	9	1.12
35094906--35094987	32	2.4	34	78	13	89	32	1	4	60	1.25
35094998--35095065	9	7.6	9	73	20	54	30	1	1	66	1.10
35095010--35095086	31	2.6	30	79	4	84	32	2	2	62	1.23
35096966--35097009	15	2.8	15	79	6	52	9	25	0	65	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126