genome.fa.s1.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  86  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26594194--26594476	29	9.8	30	69	17	129	32	25	7	34	1.84
26594378--26594478	28	3.6	30	71	20	92	28	26	9	34	1.89
26594691--26594882	96	2.0	96	84	4	253	28	16	14	41	1.87
26601525--26601747	107	2.1	108	94	3	396	40	6	10	42	1.65
26601677--26601916	123	2.0	123	88	0	363	42	7	11	39	1.68
26602629--26602691	33	1.9	33	93	6	110	34	3	26	34	1.73
26605688--26605908	107	2.1	107	92	1	363	39	7	9	42	1.66
26605838--26606204	123	3.0	123	93	0	610	42	8	11	37	1.71
26605732--26606204	246	2.0	237	81	8	561	41	8	11	38	1.71
26606063--26606109	22	2.2	21	81	11	51	51	2	12	34	1.52
26606984--26607037	20	2.7	20	91	0	81	27	31	11	29	1.91
26609516--26609569	20	2.7	20	88	0	63	27	27	11	33	1.91
26609647--26609704	30	2.0	30	83	6	75	36	18	15	29	1.92
26616829--26616869	12	3.2	13	80	16	50	39	0	7	53	1.29
26626601--26626653	25	2.1	25	82	0	61	37	11	22	28	1.89
26629598--26629663	33	2.0	33	82	5	80	25	16	18	39	1.91
26629802--26629913	49	2.3	49	80	6	120	21	22	20	35	1.96
26630869--26630963	47	2.0	47	93	0	163	30	16	20	32	1.95
26632984--26633033	15	3.4	15	73	13	50	16	4	4	76	1.10
26635426--26635473	20	2.4	20	80	10	62	56	6	25	12	1.59
26644429--26644608	52	3.5	52	90	0	279	28	13	22	35	1.92
26645360--26645408	21	2.3	21	78	0	62	28	16	26	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26675775--26675821	22	2.1	22	84	7	60	4	4	10	80	0.98
26677457--26677497	21	1.9	22	90	5	66	26	9	7	56	1.58
26696542--26696577	12	2.8	13	87	8	56	0	33	0	66	0.92
26708721--26708767	12	3.9	12	80	0	58	14	14	17	53	1.74
26708720--26708767	24	2.0	24	87	0	69	16	14	16	52	1.76
26710907--26710933	7	3.9	7	100	0	54	0	44	0	55	0.99
26715238--26715290	24	2.2	24	83	3	72	47	1	1	49	1.23
26715271--26715329	15	4.1	15	76	8	52	59	1	3	35	1.24
26715281--26715340	29	2.1	30	84	6	79	60	0	5	35	1.19
26715370--26715414	21	2.1	21	84	8	56	28	4	0	66	1.11
26715441--26715482	21	2.0	22	85	4	59	50	0	0	50	1.00
26715424--26715481	23	2.4	26	78	21	72	46	0	3	50	1.18
26716016--26716059	23	1.9	23	85	0	61	40	2	4	52	1.34
26717269--26717345	31	2.5	31	85	6	95	37	2	10	49	1.51
26726904--26727802	38	22.9	42	71	13	399	25	17	23	33	1.96
26726904--26727271	40	9.3	41	70	14	184	25	19	23	31	1.98
26726904--26727784	78	11.3	78	83	1	1014	25	17	23	33	1.96
26727942--26728048	42	2.5	42	86	5	137	18	27	15	38	1.91
26728069--26728274	49	4.2	48	76	7	173	21	24	16	37	1.93
26728075--26728300	98	2.3	98	80	3	240	20	26	15	37	1.93
26729213--26729263	21	2.4	21	87	12	70	1	19	0	78	0.85
26729218--26729263	20	2.2	21	88	11	69	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26731821--26732014	97	2.0	97	85	6	259	39	14	17	28	1.88
26732277--26732498	30	7.5	29	76	14	222	30	3	30	35	1.75
26732282--26732498	59	3.7	59	91	2	337	31	3	29	35	1.75
26732251--26732476	117	1.9	117	88	1	337	31	4	28	35	1.77
26732280--26732498	29	7.4	30	76	13	222	31	3	30	34	1.75
26733252--26733281	2	15.0	2	100	0	60	50	0	0	50	1.00
26733392--26733455	2	32.0	2	100	0	128	50	0	0	50	1.00
26734708--26734969	39	6.7	39	74	2	213	25	20	31	23	1.98
26734715--26734970	78	3.3	78	86	1	343	24	19	32	23	1.97
26735235--26736088	49	17.4	49	71	9	551	18	24	18	38	1.93
26735235--26736082	98	8.6	98	88	2	1105	18	25	18	37	1.93
26737029--26737099	30	2.4	29	79	9	81	1	19	1	77	0.92
26737034--26737094	22	2.7	23	80	10	63	1	16	1	80	0.88
26737061--26737094	17	2.0	17	88	0	50	0	17	0	82	0.67
26737033--26737095	29	2.2	30	80	13	78	1	19	1	77	0.93
26737035--26737105	22	3.4	21	72	23	62	1	18	1	78	0.89
26737068--26737119	24	2.3	22	81	12	61	3	15	0	80	0.85
26743056--26743100	6	7.5	6	89	0	63	46	0	31	22	1.52
26746607--26746644	15	2.4	16	86	4	51	63	0	5	31	1.17
26750829--26750972	30	4.8	30	76	3	148	33	23	2	40	1.69
26750833--26750972	59	2.3	60	83	4	176	34	24	2	38	1.70
26752746--26752805	30	2.0	29	84	9	77	48	0	16	35	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26753571--26753611	21	2.1	19	86	9	55	65	4	4	24	1.32
26759431--26759746	59	5.4	58	87	1	470	34	4	29	31	1.76
26759431--26759744	117	2.7	117	94	0	556	34	4	28	32	1.76
26759726--26760168	30	14.7	29	90	4	616	35	2	24	37	1.68
26759752--26759806	19	3.3	19	63	36	54	29	3	27	40	1.73
26759738--26760168	60	7.2	60	92	0	691	35	2	23	38	1.68
26759738--26760168	90	4.8	90	92	0	700	35	2	23	38	1.68
26761218--26761261	15	2.8	15	89	6	61	38	0	0	61	0.96
26761734--26761764	15	2.1	15	100	0	62	12	12	54	19	1.70
26761962--26762000	19	2.1	18	90	4	60	41	2	2	53	1.28
26763488--26763522	18	1.9	18	88	0	52	48	0	0	51	1.00
26763666--26763735	29	2.4	29	97	0	131	50	5	1	42	1.35
26771264--26771310	18	2.4	20	86	10	62	2	27	2	68	1.13
26783958--26784011	28	2.0	27	82	10	65	31	7	9	51	1.61
26789280--26789318	7	5.6	7	88	11	53	23	30	17	28	1.97
26790972--26791041	35	2.0	35	97	0	131	35	5	20	38	1.76
26791180--26791212	11	3.0	11	90	0	57	63	3	0	33	1.10
26791165--26791212	22	2.3	20	86	13	62	66	4	0	29	1.10
26791823--26791855	17	2.0	17	88	5	50	9	6	0	84	0.76
26792452--26792485	10	3.5	10	84	8	52	73	0	2	23	0.97
26792448--26792510	24	2.7	24	85	7	76	76	0	4	19	0.96
26792465--26792511	6	7.8	6	76	9	51	78	0	4	17	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26796006--26796037	11	2.9	11	90	0	55	65	3	0	31	1.08
26798414--26798478	22	2.9	22	88	6	87	12	24	20	43	1.86
26802829--26802883	22	2.5	22	90	0	83	10	18	29	41	1.84
26805026--26805069	14	3.2	13	81	12	52	18	34	22	25	1.96
26808810--26808913	29	3.6	28	69	19	79	35	2	29	31	1.72
26808811--26809036	59	3.9	58	81	10	264	34	3	29	31	1.76
26808838--26808988	30	5.2	29	76	19	136	34	2	31	31	1.72
26808856--26808997	28	4.9	28	74	18	103	33	3	30	32	1.75
26810090--26810149	3	19.7	3	96	3	111	33	0	1	65	1.03
26810880--26810949	23	2.7	28	80	17	87	60	2	0	37	1.12
26810881--26810959	6	13.8	6	71	10	58	58	2	1	37	1.20
26810881--26810987	17	6.3	17	78	7	101	57	4	1	36	1.31
26812942--26813034	28	3.4	28	77	4	82	37	23	19	19	1.94
26812942--26813003	27	2.3	27	80	8	72	38	22	19	19	1.93
26817718--26817773	27	2.1	26	83	12	69	42	19	0	37	1.52
26819506--26819548	22	1.9	23	85	4	61	34	4	16	44	1.68
26821593--26821713	29	4.0	31	73	11	115	42	23	8	25	1.81
26821667--26821718	14	3.6	14	82	5	68	40	23	7	28	1.82
26821948--26821990	17	2.4	18	84	3	61	41	18	11	27	1.85
26827201--26827341	43	3.3	43	88	1	194	36	10	26	26	1.89
26828024--26828077	21	2.6	21	82	5	65	35	9	24	31	1.87
26830532--26830561	14	2.1	14	93	0	51	23	0	3	73	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26832449--26832487	11	3.7	10	83	10	51	33	0	0	66	0.92
26834370--26834398	14	2.1	14	100	0	58	37	0	13	48	1.43
26834597--26834638	19	2.2	19	86	0	57	26	7	0	66	1.17
26836053--26836082	15	1.9	16	93	6	53	46	3	0	50	1.18
26836651--26836708	29	2.0	29	100	0	116	27	13	0	58	1.36
26844587--26844633	18	2.6	18	80	16	60	55	0	2	42	1.12
26844876--26844950	20	3.7	21	75	13	77	29	6	2	61	1.35
26844879--26844944	19	3.4	20	76	14	75	27	7	3	62	1.37
26844899--26845094	10	20.3	9	64	15	54	30	4	1	63	1.23
26844972--26845077	30	3.6	29	80	8	108	34	1	1	61	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126