genome.fa.s1.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  97  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29698700--29698750	11	4.9	11	77	20	56	41	1	0	56	1.10
29698696--29698746	18	2.9	17	85	5	66	39	1	0	58	1.09
29698699--29698741	18	2.4	18	92	0	68	44	2	0	53	1.13
29699372--29699405	9	3.8	9	92	0	50	58	0	0	41	0.98
29700408--29700713	29	10.6	30	76	14	153	35	27	2	34	1.70
29700420--29700695	86	3.2	83	77	11	252	35	26	2	35	1.69
29700536--29700713	57	3.1	56	84	6	214	35	28	2	33	1.72
29713028--29713855	39	21.4	39	74	6	601	24	31	19	24	1.98
29713028--29713316	153	1.9	153	88	1	436	23	32	19	24	1.97
29713022--29713790	117	6.6	116	79	5	662	23	31	19	24	1.98
29713028--29713855	272	3.1	270	85	3	1092	24	31	19	24	1.98
29713027--29713855	194	4.3	192	76	7	644	24	31	19	24	1.98
29715890--29716061	23	7.3	24	80	7	176	13	21	20	44	1.85
29715914--29716110	48	4.2	48	79	5	197	14	21	19	45	1.85
29715891--29716111	71	3.2	69	83	14	253	13	22	19	44	1.85
29716624--29716694	6	11.5	6	83	8	81	45	0	1	53	1.09
29716625--29716694	26	2.9	23	85	8	77	44	0	1	54	1.09
29717332--29717397	15	4.4	15	92	0	96	68	4	0	27	1.09
29717345--29717397	3	17.7	3	96	0	97	67	1	0	30	1.01
29718405--29718694	28	10.0	28	82	9	203	33	27	3	34	1.74
29718443--29718693	57	4.3	58	82	7	269	33	28	3	34	1.75
29718412--29718706	29	10.2	27	78	10	90	34	27	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29719039--29719069	16	1.9	16	100	0	62	6	19	29	45	1.75
29721533--29721562	15	1.9	16	93	6	53	50	26	10	13	1.73
29724850--29724878	15	1.9	15	100	0	58	27	6	48	17	1.72
29726552--29726608	29	2.0	29	82	6	71	47	8	8	35	1.66
29731391--29731435	3	15.0	3	95	0	81	35	0	31	33	1.58
29734647--29734739	39	2.4	39	86	8	129	53	2	0	44	1.12
29734660--29734739	38	2.1	38	90	6	126	51	2	0	46	1.14
29736463--29736724	29	9.0	28	72	13	136	39	4	23	32	1.74
29736463--29736531	28	2.4	30	78	9	81	39	5	26	28	1.79
29736436--29736659	116	1.9	117	82	2	281	38	4	24	32	1.75
29736612--29736848	30	7.9	30	79	5	221	39	2	20	36	1.68
29736612--29736848	60	4.0	60	88	3	309	39	2	20	36	1.68
29736612--29736853	90	2.7	90	79	7	269	39	2	21	35	1.68
29738314--29738403	17	5.3	16	82	7	99	52	2	1	44	1.20
29738330--29738403	6	13.0	6	72	16	68	52	2	1	43	1.23
29738330--29738403	11	6.5	11	72	10	60	52	2	1	43	1.23
29738326--29738403	28	2.8	29	79	14	83	52	2	1	43	1.23
29738665--29738758	38	2.4	39	81	10	113	26	25	26	21	1.99
29738685--29738768	38	2.2	39	85	6	109	28	20	26	25	1.99
29739120--29741382	100	22.6	100	90	0	3400	15	26	22	36	1.93
29742678--29742710	13	2.4	14	90	5	50	0	15	3	81	0.80
29742666--29742711	14	3.4	14	80	19	53	0	15	4	80	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29748093--29748434	29	11.6	28	73	14	139	37	2	24	34	1.71
29748119--29748503	60	6.5	59	80	9	326	38	3	23	35	1.71
29748237--29748507	30	9.1	29	79	9	235	38	2	23	35	1.67
29748237--29748507	29	9.1	29	74	12	176	38	2	23	35	1.67
29748237--29748507	60	4.6	60	86	5	331	38	2	23	35	1.67
29748643--29748668	11	2.4	11	100	0	52	73	0	0	26	0.84
29749971--29750043	17	4.3	17	82	3	85	50	1	0	47	1.09
29749987--29750043	6	10.0	6	77	11	66	50	1	0	47	1.11
29749971--29750025	23	2.4	23	80	17	62	49	1	0	49	1.11
29749988--29750043	11	5.0	11	80	4	67	51	1	0	46	1.11
29752268--29752314	21	2.2	22	85	11	62	2	42	0	55	1.12
29758084--29758108	10	2.5	10	100	0	50	32	12	28	28	1.92
29763200--29763237	19	2.0	20	85	15	53	55	5	13	26	1.59
29767403--29767624	119	1.9	120	96	0	410	60	7	6	25	1.48
29767599--29767650	11	4.7	11	79	13	54	75	11	1	11	1.14
29770960--29771025	31	2.2	29	78	10	71	27	1	4	66	1.20
29784391--29784443	2	26.5	2	100	0	106	50	0	0	49	1.00
29784981--29785056	26	2.8	26	78	9	73	44	2	3	48	1.35
29785796--29785820	7	3.6	7	100	0	50	28	0	28	44	1.55
29791610--29791668	31	1.9	31	92	0	100	23	13	10	52	1.71
29791618--29791679	31	2.0	31	87	3	88	27	12	8	51	1.68
29791922--29792051	31	4.1	31	71	14	113	50	12	14	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29803854--29804078	98	2.3	98	87	0	306	31	12	23	32	1.92
29803894--29804044	49	3.1	48	73	9	153	29	12	25	33	1.92
29808318--29808365	18	2.7	18	96	0	87	37	20	18	22	1.94
29808985--29809023	21	2.0	20	85	14	55	56	15	12	15	1.68
29809747--29810291	272	2.0	272	99	0	1081	30	26	14	27	1.95
29815713--29815751	20	2.0	20	90	5	62	25	7	0	66	1.18
29817938--29818105	52	3.2	52	91	1	257	32	25	15	26	1.95
29822467--29822518	19	2.7	19	82	11	70	76	0	23	0	0.78
29822468--29822518	14	3.6	14	78	17	61	76	0	23	0	0.79
29822467--29822518	5	10.0	5	84	12	61	76	0	23	0	0.78
29822505--29822598	44	2.2	43	84	9	120	58	15	17	8	1.61
29824276--29824622	49	7.1	49	74	7	310	37	18	25	19	1.94
29824276--29824630	98	3.6	98	90	0	548	37	18	24	18	1.93
29824858--29824895	19	2.0	19	100	0	76	31	26	5	36	1.79
29825591--29825752	79	2.0	80	93	1	281	46	33	3	16	1.64
29835097--29835290	52	3.7	52	85	4	234	30	24	15	28	1.96
29841960--29842053	49	1.9	49	88	0	143	31	14	12	40	1.84
29843948--29843980	3	11.0	3	100	0	66	33	0	0	66	0.92
29846652--29846697	20	2.2	22	84	7	60	63	10	0	26	1.27
29846660--29846723	20	3.2	19	79	20	69	57	7	0	34	1.27
29846673--29846732	20	3.1	19	78	4	57	56	6	0	36	1.26
29846821--29846873	3	17.7	3	96	0	97	32	1	0	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29847876--29848046	23	7.3	23	75	10	125	43	19	23	14	1.87
29847921--29848046	46	2.7	47	77	6	139	44	19	22	14	1.86
29847876--29848012	69	2.0	66	83	13	170	43	19	22	14	1.88
29855094--29855173	23	3.4	23	92	3	124	42	22	22	12	1.87
29856516--29856545	14	2.2	13	94	5	51	46	20	0	33	1.51
29860219--29860258	2	20.0	2	100	0	80	50	0	0	50	1.00
29862937--29863055	40	2.9	41	83	3	150	42	19	21	16	1.89
29864927--29865146	42	5.3	42	82	1	196	32	20	28	19	1.97
29865066--29865143	40	2.0	40	94	0	138	37	21	23	17	1.94
29867591--29867650	29	2.1	28	84	9	77	46	1	1	50	1.21
29867664--29867718	4	13.5	4	81	11	67	49	0	0	50	1.00
29867692--29867882	46	4.6	45	70	20	144	47	4	1	47	1.28
29867768--29867794	14	1.9	14	100	0	54	55	0	0	44	0.99
29867728--29867834	54	2.0	54	85	3	144	48	0	0	49	1.13
29867734--29867834	12	9.2	12	66	23	71	47	0	0	50	1.14
29867573--29867822	8	32.1	8	66	14	67	48	3	0	48	1.23
29867666--29867944	120	2.2	120	85	8	346	46	5	0	47	1.29
29867802--29867909	46	2.3	46	83	6	135	46	8	0	44	1.40
29872779--29872883	51	2.0	53	89	7	162	20	19	34	25	1.96
29872832--29872987	43	3.7	43	83	3	208	23	19	30	26	1.98
29872832--29872987	84	1.9	84	86	0	222	23	19	30	26	1.98
29873357--29873400	9	4.8	9	88	5	70	25	40	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29874701--29874764	25	2.5	25	76	16	60	53	6	3	37	1.42
29874693--29874799	37	2.9	36	77	14	94	52	4	1	41	1.33
29880414--29880538	15	8.3	15	74	10	103	25	20	27	27	1.99
29880414--29880538	45	2.8	45	85	2	162	25	20	27	27	1.99
29887049--29887087	18	2.2	18	95	0	69	30	33	10	25	1.89
29898958--29899050	30	3.1	30	77	0	105	26	16	27	29	1.97
29898945--29899040	15	6.4	15	68	9	61	30	16	23	29	1.96
29901323--29901386	31	2.0	32	81	3	76	35	9	26	28	1.87
29902103--29902148	22	2.0	23	91	4	76	56	13	19	10	1.66
29911377--29911468	19	5.1	19	74	19	65	57	2	0	40	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126