genome.fa.s1.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  32  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9777947--9778012	27	2.4	27	82	0	78	39	21	19	19	1.93
9780449--9780474	5	5.2	5	100	0	52	76	0	0	23	0.78
9782666--9782698	14	2.4	14	89	0	57	66	0	33	0	0.92
9783408--9783444	18	2.1	18	89	0	56	48	0	27	24	1.51
9789430--9789456	14	1.9	14	100	0	54	59	0	40	0	0.98
9789840--9789875	18	2.1	18	89	5	56	47	0	22	30	1.52
9793523--9793732	40	5.3	40	77	2	217	29	30	15	25	1.96
9793519--9793732	79	2.7	79	89	0	320	28	30	14	25	1.95
9795778--9795820	22	2.0	22	81	9	52	20	13	0	65	1.27
9800008--9800065	23	2.5	23	91	0	89	34	5	13	46	1.66
9803148--9803189	21	2.0	21	81	9	50	66	2	0	30	1.04
9803311--9803380	29	2.4	30	83	9	99	31	1	1	65	1.10
9804133--9804200	11	6.8	10	77	9	59	33	2	1	61	1.20
9804133--9804200	20	3.4	20	74	8	75	33	2	1	61	1.20
9804184--9804254	19	3.6	19	79	7	63	42	0	0	57	0.98
9805191--9807007	457	4.0	457	98	0	3488	42	14	6	36	1.72
9814413--9814480	26	2.6	26	85	0	100	16	35	25	23	1.95
9814382--9814549	26	6.4	26	69	13	67	14	28	23	32	1.95
9820060--9820089	14	2.1	14	93	0	51	70	3	6	20	1.25
9821807--9821835	14	2.0	15	93	6	51	34	17	20	27	1.95
9825399--9825438	17	2.4	17	88	12	57	52	15	17	15	1.75
9828890--9829170	141	2.0	140	92	0	472	27	19	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9837304--9837355	25	2.1	25	85	0	68	26	23	21	28	1.99
9839901--9840039	69	2.0	69	84	2	181	35	23	15	25	1.94
9843801--9843971	34	4.9	35	73	11	143	25	22	20	31	1.98
9843817--9844022	108	1.9	108	83	4	263	28	21	18	31	1.97
9848931--9848962	15	2.1	15	94	0	55	40	9	21	28	1.84
9851395--9851629	117	2.0	117	100	0	470	39	13	13	33	1.84
9855930--9855969	19	2.2	18	86	13	55	60	5	12	22	1.52
9861946--9861988	10	4.2	11	82	11	56	86	0	13	0	0.58
9861946--9861989	19	2.2	20	88	4	63	84	0	15	0	0.63
9863850--9863991	29	4.9	29	77	11	148	35	24	0	38	1.61
9863738--9863985	30	8.4	30	73	9	163	34	22	2	40	1.68
9863853--9864012	87	1.8	86	85	7	225	34	24	1	40	1.63
9876131--9876291	85	1.9	85	84	2	216	39	12	22	25	1.89
9876050--9876923	209	4.2	209	86	2	1076	39	16	20	23	1.92
9876551--9876708	85	1.9	85	86	2	228	38	17	20	23	1.93
9876099--9876905	420	1.9	419	87	1	1168	39	16	20	23	1.92
9876827--9876927	47	2.1	47	85	3	130	44	16	19	18	1.87
9876843--9876933	47	1.9	47	90	0	146	41	16	23	18	1.90
9877297--9877365	33	2.1	32	81	7	77	40	13	7	39	1.72
9877645--9877678	15	2.3	15	89	0	50	29	5	14	50	1.67
9880815--9881156	169	2.0	171	97	1	643	37	14	11	36	1.83
9881529--9881557	13	2.2	13	100	0	58	41	13	31	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9882481--9882628	49	3.0	50	75	2	156	35	16	31	16	1.91
9882794--9883055	41	6.3	40	84	6	308	33	18	17	29	1.95
9882793--9883023	82	2.8	82	88	3	340	35	17	17	29	1.93
9882653--9883061	123	3.2	123	79	13	395	33	21	17	28	1.96
9907270--9907321	14	3.6	14	85	10	68	38	1	1	57	1.21
9907268--9907315	16	3.1	16	88	8	73	41	2	0	56	1.11
9907342--9907388	25	1.9	25	86	4	69	42	2	0	55	1.12
9907668--9907706	21	1.9	20	89	5	60	28	0	23	48	1.51
9907679--9907739	13	4.4	14	70	10	54	31	1	16	50	1.55
9909048--9909075	8	3.5	8	100	0	56	21	0	0	78	0.75
9909150--9909178	11	2.7	11	94	5	51	62	0	0	37	0.96
9913325--9913359	14	2.4	14	90	4	52	54	8	22	14	1.67
9918628--9918662	14	2.4	14	90	4	52	54	8	22	14	1.67
9920881--9921535	98	6.7	98	90	1	900	18	25	18	36	1.94
9920899--9921535	49	13.0	48	68	12	320	18	26	18	36	1.94
9922593--9922620	14	2.0	14	100	0	56	0	14	0	85	0.59
9923441--9923562	61	2.0	62	87	7	178	12	20	9	57	1.63
9927786--9927820	14	2.4	14	90	4	52	54	8	22	14	1.67
9930262--9930316	17	3.2	17	75	19	51	61	7	18	12	1.53
9930759--9930800	15	2.7	16	88	7	68	0	35	0	64	0.94
9930755--9930800	21	2.2	21	88	7	67	0	34	0	65	0.93
9930758--9930800	3	14.0	3	81	13	52	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9936551--9936728	86	2.1	86	100	0	356	16	25	20	37	1.94
9939445--9939495	23	2.2	24	96	3	95	31	13	25	29	1.94
9941096--9941128	3	11.3	3	93	6	59	69	0	30	0	0.88
9941098--9941125	14	2.0	14	100	0	56	71	0	28	0	0.86
9941096--9941129	17	2.0	17	100	0	68	70	0	29	0	0.87
9942472--9943143	209	3.2	209	87	2	926	37	19	20	23	1.94
9943483--9943554	6	13.0	6	70	16	57	43	0	1	55	1.08
9943483--9943554	17	4.4	17	87	7	112	43	0	1	55	1.08
9943480--9943552	11	7.2	11	68	22	52	41	0	1	57	1.07
9945468--9945710	30	8.2	30	77	10	180	34	24	3	36	1.74
9945447--9945771	59	5.5	59	77	12	253	35	23	4	36	1.74
9945475--9945788	30	10.7	30	77	11	151	35	23	3	36	1.73
9945631--9945769	29	4.8	28	78	13	122	34	21	3	40	1.71
9945617--9945779	29	5.6	28	76	16	86	32	22	4	40	1.75
9950064--9950163	33	3.0	32	75	5	92	31	17	21	31	1.95
9952880--9952908	14	2.1	14	100	0	58	58	6	13	20	1.58
9953118--9953176	29	2.0	29	87	6	84	20	35	25	18	1.95
9969975--9970002	7	4.0	7	100	0	56	57	14	0	28	1.38
9970930--9970978	9	5.7	9	79	15	59	42	0	32	24	1.55
9970934--9970966	17	2.0	16	94	5	57	42	0	30	27	1.56
9981069--9981095	13	2.1	13	100	0	54	44	7	22	25	1.79
9981506--9981554	21	2.3	22	82	13	66	46	2	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9982821--9982888	29	2.3	31	79	5	77	35	16	14	33	1.89
9983073--9983129	29	1.9	30	85	3	80	52	8	3	35	1.50
9983630--9983663	17	2.0	17	88	11	52	70	11	0	17	1.16
9984320--9984356	19	2.0	19	94	5	67	51	10	0	37	1.37
9984359--9984407	10	5.1	9	76	13	53	63	0	4	32	1.13
9988027--9988058	4	8.0	4	100	0	64	25	0	0	75	0.81
9988035--9988210	61	3.0	57	82	13	198	55	2	0	42	1.17
9988176--9988217	18	2.3	18	80	8	50	76	0	2	21	0.90
9988730--9990098	159	8.6	160	91	4	2181	24	18	24	31	1.98
9988730--9990098	79	17.2	80	91	4	2181	24	18	24	31	1.98
9990183--9990328	50	2.9	50	84	0	184	21	24	19	34	1.97
9991248--9991304	25	2.3	24	80	11	62	1	15	1	80	0.87
9991266--9991323	18	3.3	17	80	4	53	5	10	1	82	0.89
9991263--9991325	25	2.6	25	84	2	74	4	11	1	82	0.88
9996290--9996461	67	2.8	60	81	15	187	55	2	0	41	1.17
9996304--9996457	67	2.4	64	88	8	222	57	2	0	38	1.17
9996430--9996471	18	2.3	18	80	8	50	76	0	2	21	0.90
10003015--10003082	32	2.1	32	89	5	102	29	11	13	45	1.79
10006063--10006131	24	2.9	24	91	0	111	28	8	4	57	1.48
10008785--10008841	28	2.0	28	83	6	71	22	19	22	35	1.96
10010837--10010911	24	3.1	24	84	0	96	24	8	9	58	1.56
10010845--10010923	24	3.3	24	83	0	77	26	10	10	53	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10019055--10019109	21	2.7	19	79	17	58	27	20	27	25	1.99
10021538--10021592	21	2.6	21	91	0	92	27	14	29	29	1.95
10025123--10025220	50	1.9	51	87	2	144	26	18	17	37	1.93
10026648--10026710	30	2.1	30	82	8	74	53	11	3	31	1.52
10030578--10030647	20	3.5	20	86	0	86	25	30	11	32	1.91
10030614--10030652	20	2.0	20	94	0	69	28	33	5	33	1.79
10031390--10031472	39	2.1	39	84	4	105	42	4	2	50	1.36
10040886--10040918	15	2.1	16	88	5	50	63	0	36	0	0.95
10042508--10042537	15	1.9	16	93	6	53	23	26	20	30	1.98
10049595--10049644	20	2.5	20	93	0	91	24	34	14	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126