genome.fa.s1.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  122  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36612833--36612926	23	4.2	22	82	10	127	87	1	10	1	0.66
36612833--36612925	30	3.1	30	86	8	129	87	1	10	1	0.66
36612838--36612924	45	1.9	45	90	4	140	87	1	10	1	0.66
36614150--36614417	50	5.3	50	73	9	161	41	18	24	15	1.89
36614816--36615480	201	3.3	206	88	2	1009	34	20	23	21	1.96
36615097--36615767	359	1.9	359	91	0	1101	34	18	23	23	1.96
36615456--36616163	200	3.5	201	88	1	970	34	18	23	23	1.96
36614891--36616039	559	2.0	563	90	1	1797	34	19	22	22	1.96
36615456--36616181	206	3.6	204	85	4	943	34	18	23	23	1.96
36616591--36616628	17	2.2	17	90	0	58	44	2	0	52	1.14
36616629--36616664	15	2.3	16	95	4	65	61	16	8	13	1.56
36616705--36616770	34	1.9	35	90	3	107	42	34	12	10	1.77
36618139--36618174	5	7.2	5	96	0	54	19	55	19	5	1.62
36621554--36621838	153	1.9	153	90	1	464	35	15	17	32	1.91
36622349--36622447	29	3.3	29	70	13	76	39	1	25	34	1.63
36622365--36622648	59	4.8	58	89	3	424	35	2	28	33	1.69
36622430--36622647	30	7.5	28	65	22	101	35	2	28	33	1.70
36622399--36622619	30	7.4	30	65	21	117	36	2	27	33	1.71
36622380--36622691	29	10.6	29	65	23	127	34	1	27	35	1.68
36622607--36622705	29	3.4	28	77	9	83	36	1	21	41	1.60
36623510--36624235	200	3.6	200	87	3	961	34	19	23	22	1.96
36624667--36624702	15	2.3	16	95	4	65	61	16	8	13	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36624743--36624808	34	1.9	35	87	3	98	42	33	13	10	1.79
36626566--36626866	146	2.1	146	86	6	414	39	22	3	33	1.73
36626596--36626873	29	9.5	29	78	8	246	38	23	3	34	1.73
36633850--36634134	153	1.9	153	90	1	464	35	15	17	32	1.91
36634645--36634743	29	3.3	29	69	13	85	38	1	26	34	1.63
36634661--36634944	59	4.8	58	89	3	424	35	2	28	33	1.69
36634726--36634943	30	7.5	28	65	22	101	35	2	28	33	1.70
36634695--36634915	30	7.4	30	65	21	117	36	2	27	33	1.71
36634676--36634987	29	10.6	29	65	23	127	34	1	27	35	1.68
36634903--36635001	29	3.4	28	77	9	83	36	1	21	41	1.60
36635806--36636523	200	3.6	201	87	2	974	34	19	23	22	1.97
36636962--36636997	15	2.3	16	95	4	65	61	16	8	13	1.56
36638889--36639166	29	9.5	28	76	11	222	38	23	3	34	1.73
36638910--36639140	88	2.6	87	83	6	297	38	23	3	33	1.73
36638859--36639159	146	2.1	146	86	6	414	39	22	3	33	1.73
36638915--36639222	29	10.7	28	70	13	130	37	23	3	34	1.73
36639150--36639260	57	1.9	57	82	7	136	32	27	6	34	1.82
36646895--36647179	153	1.9	153	90	1	464	35	15	17	32	1.91
36647690--36647784	29	3.2	29	68	16	79	36	1	27	34	1.64
36647705--36647988	59	4.8	58	89	3	424	35	2	28	33	1.69
36647739--36647959	30	7.5	31	65	21	125	36	2	27	33	1.71
36647770--36647987	30	7.5	28	65	22	101	35	2	28	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36647720--36648031	29	10.6	29	65	23	127	34	1	27	35	1.68
36647947--36648045	29	3.4	28	77	9	83	36	1	21	41	1.60
36648849--36649566	200	3.6	201	87	2	974	34	19	23	22	1.97
36650006--36650041	15	2.3	16	95	4	65	61	16	8	13	1.56
36650082--36650147	34	1.9	35	87	3	98	42	33	13	10	1.79
36651935--36652212	29	9.5	28	76	11	222	38	23	3	34	1.73
36651956--36652186	88	2.6	87	83	6	297	38	23	3	33	1.73
36651905--36652205	146	2.1	146	86	6	414	39	22	3	33	1.73
36652196--36652308	58	1.9	59	83	5	149	31	28	6	33	1.82
36659197--36659481	153	1.9	153	90	1	464	35	15	17	32	1.91
36659992--36660090	29	3.3	29	69	13	85	38	1	26	34	1.63
36660008--36660291	59	4.8	58	89	3	424	35	2	28	33	1.69
36660073--36660290	30	7.5	28	65	22	101	35	2	28	33	1.70
36660042--36660262	30	7.4	30	65	21	117	36	2	27	33	1.71
36660023--36660334	29	10.6	29	65	23	127	34	1	27	35	1.68
36660250--36660348	29	3.4	28	77	9	83	36	1	21	41	1.60
36661153--36661870	200	3.6	201	87	2	974	34	19	23	22	1.97
36662310--36662345	15	2.3	16	95	4	65	61	16	8	13	1.56
36662386--36662451	34	1.9	35	87	3	98	42	33	13	10	1.79
36664239--36664516	29	9.5	28	76	11	222	38	23	3	34	1.73
36664260--36664490	88	2.6	87	83	6	297	38	23	3	33	1.73
36664209--36664509	146	2.1	146	86	6	414	39	22	3	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36664500--36664612	58	1.9	59	83	5	149	31	28	6	33	1.82
36672468--36672556	29	3.0	29	66	21	67	33	5	31	29	1.81
36672468--36672630	65	2.6	64	87	7	248	36	4	29	29	1.76
36672643--36672912	30	8.9	30	91	4	418	34	3	25	36	1.73
36672643--36672912	61	4.4	61	93	1	438	34	3	25	36	1.73
36674184--36674453	61	4.4	61	90	5	415	37	24	3	34	1.72
36674184--36674453	31	8.9	30	90	5	409	37	24	3	34	1.72
36674495--36674627	29	4.6	29	72	10	101	27	31	4	36	1.77
36675875--36675918	21	2.1	21	82	0	52	20	4	20	54	1.62
36682603--36682836	29	8.2	29	75	10	171	33	3	23	38	1.73
36682601--36682834	58	4.1	56	78	8	206	34	3	23	38	1.73
36682617--36682836	87	2.5	86	82	8	252	34	3	23	38	1.73
36684678--36684743	34	1.9	35	87	3	98	10	13	33	42	1.79
36684784--36684819	15	2.3	16	95	4	65	13	8	16	61	1.56
36685258--36685975	200	3.6	201	86	3	958	22	23	19	34	1.97
36685797--36686135	160	2.2	156	86	3	459	23	22	20	33	1.97
36685598--36686297	361	2.0	353	87	3	1017	22	23	19	34	1.97
36686777--36686873	29	3.4	27	78	7	86	42	21	1	35	1.60
36686777--36686939	29	5.6	27	69	18	80	38	23	1	37	1.63
36686796--36687149	59	6.1	55	85	6	253	35	27	1	35	1.67
36686811--36686940	29	4.5	29	68	22	85	36	24	0	37	1.61
36687042--36687136	29	3.2	29	70	16	88	35	27	1	35	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36686839--36687121	59	4.8	58	89	2	431	33	28	2	35	1.69
36687646--36687930	153	1.9	153	90	1	464	32	17	15	35	1.91
36688197--36688240	21	2.1	21	82	0	52	20	4	20	54	1.62
36694817--36694929	58	1.9	59	83	5	149	33	6	28	31	1.82
36694922--36695190	29	9.2	28	77	10	197	34	4	22	39	1.73
36694913--36695190	58	4.8	58	77	9	253	34	3	23	38	1.73
36694966--36695164	59	3.4	59	79	7	201	35	3	22	39	1.70
36694910--36695220	146	2.1	146	85	5	416	34	3	23	38	1.73
36696978--36697043	34	1.9	35	87	3	98	10	13	33	42	1.79
36697084--36697119	15	2.3	16	95	4	65	13	8	16	61	1.56
36697559--36698276	200	3.6	201	86	3	958	22	23	19	34	1.97
36698098--36698434	158	2.2	155	86	2	471	23	22	20	33	1.97
36697899--36698596	359	2.0	353	88	2	1031	22	23	19	33	1.97
36699076--36699172	29	3.4	27	78	7	86	42	21	1	35	1.60
36699076--36699238	29	5.6	27	69	18	80	38	23	1	37	1.63
36699095--36699421	59	5.6	55	85	6	242	35	28	1	34	1.68
36699177--36699388	30	7.2	30	65	22	117	33	28	2	35	1.72
36699110--36699239	29	4.5	29	68	22	85	36	24	0	37	1.61
36699138--36699392	29	8.7	30	65	22	116	33	29	2	34	1.70
36699336--36699430	29	3.2	29	67	17	70	33	26	1	38	1.63
36699138--36699421	59	4.8	58	89	2	424	33	28	2	35	1.69
36699948--36700232	153	1.9	153	90	1	464	32	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36700501--36700544	21	2.1	21	82	0	52	20	4	20	54	1.62
36707122--36707234	58	1.9	59	83	5	149	33	6	28	31	1.82
36707227--36707495	29	9.2	28	77	10	197	34	4	22	39	1.73
36707218--36707495	58	4.8	58	77	9	253	34	3	23	38	1.73
36707271--36707469	59	3.4	59	79	7	201	35	3	22	39	1.70
36707215--36707524	146	2.1	145	85	5	421	34	3	23	38	1.73
36709282--36709347	34	1.9	35	87	3	98	10	13	33	42	1.79
36709388--36709423	15	2.3	16	95	4	65	13	8	16	61	1.56
36709863--36710579	206	3.6	200	87	3	956	22	23	19	34	1.97
36710401--36710737	158	2.2	155	86	2	471	23	22	20	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126