genome.fa.s1.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  114  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33980930--33981008	33	2.4	34	82	14	96	44	12	17	25	1.84
33997714--33997749	2	18.0	2	100	0	72	50	0	50	0	1.00
33997985--33998032	14	3.3	14	82	5	60	33	0	4	62	1.14
33997970--33998058	31	3.0	30	73	15	76	35	4	2	57	1.32
33999630--33999681	26	2.0	27	81	11	63	63	7	7	21	1.46
34003857--34003890	16	2.1	16	94	0	59	32	0	0	67	0.91
34003928--34003965	2	19.5	2	89	5	60	47	2	0	50	1.15
34018919--34018957	16	2.4	17	83	12	55	58	20	0	20	1.39
34024618--34024694	37	2.1	38	90	7	122	46	0	2	50	1.15
34028470--34028547	30	2.6	30	83	4	95	26	16	21	34	1.95
34037473--34037617	37	3.9	37	86	0	182	16	17	29	36	1.92
34037538--34037595	16	3.0	21	63	31	56	12	18	31	37	1.88
34039024--34039059	16	2.1	16	90	10	54	44	0	0	55	0.99
34040895--34040952	26	2.2	26	87	6	82	44	6	17	31	1.75
34042226--34042280	22	2.5	22	96	3	101	34	30	7	27	1.84
34043043--34043107	32	2.0	33	82	14	82	64	0	0	35	0.94
34043050--34043111	6	9.3	7	80	16	53	61	0	0	38	0.96
34043038--34043121	33	2.7	30	72	15	75	59	0	1	39	1.05
34043342--34043392	20	2.7	20	87	6	70	62	0	5	31	1.19
34043566--34043618	17	3.2	17	83	5	63	28	1	3	66	1.20
34043569--34043606	16	2.4	16	90	0	58	26	0	2	71	1.00
34043625--34043679	20	2.8	19	74	23	51	27	5	3	63	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34049616--34049648	2	16.5	2	100	0	66	0	48	0	51	1.00
34057442--34057573	66	2.0	66	93	0	228	34	18	8	38	1.81
34060878--34060933	19	2.9	19	87	10	71	37	0	7	55	1.27
34060878--34060933	20	2.9	20	84	10	64	37	0	7	55	1.27
34079040--34079070	15	2.1	15	93	0	53	61	3	0	35	1.12
34082824--34082930	38	2.8	38	84	7	101	56	3	0	40	1.17
34086602--34086645	5	8.8	5	100	0	88	40	0	0	59	0.98
34092803--34092841	20	1.9	21	94	5	71	25	0	23	51	1.49
34096816--34096859	23	1.9	23	81	9	54	52	0	6	40	1.28
34106000--34106094	6	16.0	6	76	14	81	48	1	2	48	1.20
34105990--34106071	31	2.8	30	82	14	100	42	1	3	52	1.26
34106009--34106094	25	3.6	23	80	9	82	50	1	2	46	1.21
34106004--34106068	17	4.1	16	73	15	64	43	1	3	52	1.26
34106001--34106093	42	2.2	42	81	7	109	48	1	2	48	1.20
34107580--34107898	162	2.0	163	88	4	475	25	16	13	44	1.84
34107991--34108128	30	4.6	30	84	7	156	37	25	2	34	1.68
34108016--34108395	59	6.5	57	89	4	417	32	27	4	35	1.77
34108110--34108328	30	7.4	30	67	22	131	32	28	5	34	1.79
34108079--34108395	118	2.7	118	91	0	510	31	28	5	35	1.80
34110358--34110397	16	2.3	18	87	8	57	12	5	2	80	0.98
34110522--34110589	30	2.2	31	82	7	77	47	20	10	22	1.80
34112864--34112896	16	2.1	17	88	11	52	57	3	0	39	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34123282--34123375	48	1.9	48	82	8	118	32	29	0	37	1.58
34125234--34125298	28	2.2	28	89	5	94	52	0	0	47	1.00
34125281--34125327	19	2.5	19	82	0	58	61	0	4	34	1.15
34126960--34126999	7	5.7	7	100	0	80	57	0	27	15	1.38
34129484--34129523	12	3.6	12	80	19	50	55	5	0	40	1.22
34129480--34129549	19	3.6	19	81	9	79	60	2	0	37	1.12
34129500--34129555	19	3.1	18	85	10	69	57	0	0	42	0.99
34129500--34129562	19	3.2	22	75	20	59	57	0	0	42	0.99
34129558--34129609	17	2.8	18	85	11	70	67	5	1	25	1.23
34132665--34132723	20	2.9	19	82	14	57	42	1	16	38	1.59
34134465--34134518	21	2.6	21	88	5	74	27	11	27	33	1.91
34135939--34136004	25	2.8	23	82	13	66	25	10	25	37	1.88
34135954--34136004	25	2.0	26	85	7	70	27	11	23	37	1.90
34136598--34136648	18	2.8	18	77	14	59	43	13	0	43	1.44
34139129--34139175	20	2.4	21	89	10	73	61	4	0	34	1.15
34139122--34139168	21	2.2	22	85	11	71	63	4	0	31	1.13
34142218--34142276	2	29.5	2	100	0	118	49	0	50	0	1.00
34158003--34158083	42	1.9	42	94	0	144	27	23	9	39	1.86
34162179--34162203	3	8.3	3	100	0	50	0	36	0	64	0.94
34163417--34163454	17	2.2	18	86	13	53	68	0	0	31	0.90
34163416--34163490	25	3.0	25	72	14	66	66	0	1	32	1.00
34168192--34168258	32	2.1	31	83	2	80	62	1	1	34	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34171462--34171513	13	3.7	13	74	18	50	53	0	0	46	1.00
34171477--34171510	16	2.0	18	88	11	54	58	0	0	41	0.98
34184863--34184914	14	3.7	14	75	10	61	38	19	5	36	1.76
34184896--34184992	42	2.3	42	78	3	97	39	26	3	30	1.72
34184896--34184991	21	4.6	21	73	3	68	39	27	3	30	1.72
34184981--34185020	21	1.9	21	89	0	62	40	20	10	30	1.85
34184916--34185008	42	2.2	42	76	0	105	37	29	4	29	1.76
34193051--34193077	4	6.8	4	100	0	54	25	0	22	51	1.48
34204096--34204155	22	2.7	21	73	19	59	50	16	0	33	1.46
34208928--34209042	58	2.0	58	87	3	169	35	0	17	46	1.48
34216504--34216603	50	2.0	50	90	3	157	52	18	13	17	1.75
34235197--34235280	38	2.2	38	85	2	107	33	36	5	23	1.79
34238439--34238478	21	1.9	21	89	0	62	32	12	20	35	1.90
34240430--34240508	39	2.0	39	97	0	149	43	12	11	32	1.79
34243115--34243201	33	2.7	33	73	18	83	41	0	0	58	0.98
34248007--34248040	17	2.1	16	88	5	50	29	5	0	64	1.17
34248558--34248595	15	2.4	17	86	8	53	34	5	0	60	1.19
34248931--34249118	90	2.1	89	80	7	211	33	17	11	38	1.85
34249233--34249287	19	2.8	19	74	12	58	60	0	1	38	1.08
34249216--34249297	29	2.9	29	78	8	80	63	1	4	30	1.23
34249616--34249646	11	2.9	11	95	4	55	35	0	0	64	0.94
34251898--34251938	21	2.0	20	90	5	55	34	7	7	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34254018--34254050	13	2.5	13	95	0	57	81	3	0	15	0.80
34264218--34264261	23	2.0	22	90	4	70	56	2	6	34	1.38
34265807--34265865	24	2.5	25	84	10	72	23	13	8	54	1.66
34268185--34268229	19	2.4	19	81	7	56	40	0	4	55	1.20
34268229--34268258	14	2.1	14	100	0	60	20	6	0	73	1.05
34269023--34269077	17	3.3	17	94	2	94	18	9	0	72	1.10
34269035--34269081	22	2.1	23	84	11	62	21	6	0	72	1.07
34270402--34270452	21	2.4	21	83	0	66	45	13	11	29	1.79
34273577--34273641	27	2.4	27	81	0	85	56	6	7	29	1.51
34274929--34275025	20	4.5	21	77	12	74	70	19	2	8	1.23
34274962--34275032	12	6.2	11	81	4	70	71	18	4	5	1.22
34274945--34275037	24	4.1	24	73	18	72	68	19	5	6	1.31
34275079--34275119	21	1.9	21	85	5	55	63	21	7	7	1.45
34275525--34275661	29	4.8	28	78	9	107	55	5	8	30	1.52
34275525--34275662	28	4.8	28	78	15	122	55	5	9	30	1.54
34275535--34275660	58	2.2	57	84	4	155	57	5	7	30	1.49
34280525--34280671	9	15.6	9	66	24	63	61	2	4	31	1.28
34280525--34280587	29	2.2	29	77	11	76	63	0	7	28	1.22
34280640--34280709	10	7.0	10	75	16	56	67	2	4	25	1.23
34280638--34280703	19	3.3	20	75	22	52	65	3	4	27	1.27
34291201--34291260	29	2.1	29	96	0	111	55	11	8	25	1.63
34304212--34304243	14	2.1	16	88	11	50	68	3	0	28	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34304415--34304444	16	1.9	16	93	6	53	36	0	0	63	0.95
34307065--34307134	31	2.3	31	80	11	83	37	11	2	48	1.54
34308927--34308973	16	2.9	16	72	15	51	68	0	0	31	0.90
34310596--34310646	20	2.6	20	81	3	59	37	0	5	56	1.23
34313772--34313796	12	2.1	12	100	0	50	48	0	0	52	1.00
34315337--34315383	15	3.3	14	82	11	60	31	0	0	68	0.90
34320415--34320474	26	2.3	27	85	2	86	28	0	23	48	1.51
34334916--34335047	67	2.0	67	96	0	246	34	22	11	31	1.90
34338923--34339037	59	1.9	59	82	6	144	43	6	6	43	1.56
34343186--34343379	52	3.7	52	85	0	262	35	23	14	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126