genome.fa.s1.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  105  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31633652--31633801	23	6.6	23	81	5	123	41	23	23	12	1.87
31641140--31641170	16	1.9	16	93	0	53	38	22	0	38	1.54
31642556--31642607	13	3.5	15	79	10	54	51	1	0	46	1.12
31643986--31644036	21	2.4	21	87	6	68	39	29	9	21	1.85
31648547--31648603	27	2.1	27	96	0	105	24	24	31	19	1.98
31650460--31650506	25	1.9	25	86	4	69	40	0	2	57	1.11
31656015--31656049	16	2.1	17	89	5	54	51	2	0	45	1.16
31660807--31660877	35	2.1	35	94	2	126	46	2	1	49	1.25
31660782--31660888	29	3.5	30	78	15	103	52	3	0	42	1.25
31661019--31661061	3	14.7	3	95	4	79	65	0	0	34	0.93
31661148--31661223	3	25.3	3	84	5	100	65	1	32	0	1.01
31661146--31661223	27	2.9	28	88	5	115	65	2	32	0	1.06
31664029--31664080	26	2.0	26	85	7	70	30	0	7	61	1.24
31664078--31664164	28	3.1	26	82	15	95	26	1	24	48	1.58
31664084--31664164	14	5.8	13	75	17	65	27	1	24	46	1.60
31664140--31664193	14	3.9	14	76	9	65	27	1	24	46	1.63
31666792--31666829	20	1.9	19	89	5	58	57	15	0	26	1.38
31667049--31667100	27	1.9	27	84	0	68	23	36	17	23	1.95
31680810--31680865	20	2.8	20	83	5	60	32	25	7	35	1.83
31692362--31692394	17	1.9	17	88	11	50	51	0	24	24	1.48
31693105--31693141	3	12.3	3	100	0	74	64	0	0	35	0.94
31701560--31701612	13	4.0	13	75	4	52	41	3	0	54	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31711809--31711895	45	1.9	45	90	0	138	36	10	0	52	1.36
31714940--31715075	69	2.0	69	97	0	254	41	19	13	26	1.88
31722152--31722205	7	8.0	7	80	14	53	70	0	27	1	0.98
31722156--31722205	14	3.8	13	77	17	59	72	0	26	2	0.96
31726960--31727022	16	3.9	16	78	12	67	58	1	6	33	1.33
31726960--31727003	17	2.8	16	83	10	54	61	0	6	31	1.22
31727543--31727567	2	12.5	2	100	0	50	0	0	48	52	1.00
31736607--31736642	18	1.9	19	88	5	56	38	0	2	58	1.13
31736606--31736648	19	2.3	19	80	8	52	41	0	2	55	1.12
31737302--31737391	12	7.6	12	78	2	74	68	17	3	10	1.31
31737309--31737391	24	3.5	23	80	4	85	69	15	3	10	1.30
31737363--31737423	26	2.3	27	75	13	65	70	18	3	8	1.26
31737408--31737479	22	3.3	22	71	9	67	68	18	5	8	1.35
31738011--31738049	15	2.8	14	85	11	53	51	0	0	48	1.00
31752512--31752562	19	2.6	19	76	17	52	41	0	5	52	1.25
31759261--31759332	20	3.6	19	73	17	58	44	6	6	41	1.58
31759302--31759343	20	2.1	20	82	8	50	45	7	2	45	1.44
31759505--31759656	20	8.0	19	65	20	59	41	12	6	39	1.69
31759505--31759566	32	1.9	32	87	6	90	43	14	3	38	1.62
31761044--31761119	38	2.0	38	84	5	100	23	14	14	47	1.81
31764199--31764240	2	21.0	2	95	0	75	47	0	0	52	1.00
31771919--31771953	11	3.1	12	88	12	56	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772071--31772135	30	2.2	30	86	5	87	60	12	6	21	1.54
31793729--31794173	228	2.0	228	95	1	804	46	19	10	23	1.80
31795315--31795358	19	2.3	19	84	0	52	45	2	6	45	1.42
31796273--31796345	37	2.0	37	88	0	110	15	19	26	39	1.90
31799713--31799772	30	2.0	30	100	0	120	36	30	10	23	1.87
31807441--31807483	12	3.5	13	78	9	54	41	0	0	58	0.98
31808775--31808809	3	12.0	3	93	6	63	34	0	0	65	0.93
31808777--31808809	17	1.9	17	100	0	66	33	0	0	66	0.92
31809479--31809519	21	2.0	21	90	0	64	60	2	2	34	1.23
31809517--31809566	10	4.8	10	78	9	55	58	0	0	42	0.98
31809516--31809566	21	2.4	21	80	6	59	58	0	0	41	0.98
31812170--31812262	27	3.6	27	68	24	81	24	41	6	26	1.79
31812146--31812332	51	3.8	49	90	2	250	27	40	7	25	1.82
31812146--31812451	99	2.9	100	80	11	283	28	38	9	24	1.86
31812131--31812336	24	8.3	24	68	16	107	28	38	7	25	1.84
31812320--31812606	33	9.5	33	70	19	196	29	36	11	22	1.90
31812146--31812725	57	10.4	57	84	8	508	28	37	10	23	1.87
31812146--31812725	114	5.2	114	81	9	560	28	37	10	23	1.87
31812527--31812808	147	1.9	147	81	2	334	26	40	11	21	1.87
31812295--31812760	180	2.6	175	83	6	505	28	37	11	22	1.89
31812614--31812849	90	2.6	90	90	2	323	25	41	11	22	1.86
31812698--31812825	33	4.2	32	64	22	76	25	41	11	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31812885--31812920	18	2.0	18	89	10	56	22	47	5	25	1.73
31812932--31813110	60	3.0	60	96	1	324	20	49	5	25	1.69
31821095--31821135	3	13.7	3	100	0	82	65	0	0	34	0.93
31821775--31821823	24	2.0	24	100	0	98	44	18	16	20	1.86
31822505--31822560	25	2.2	27	78	18	75	73	7	0	19	1.06
31823836--31823886	5	10.2	5	100	0	102	60	0	0	39	0.97
31827417--31827452	18	1.9	19	88	5	56	27	16	11	44	1.82
31834375--31834431	22	2.6	22	91	0	96	14	19	21	45	1.85
31835760--31835894	40	3.4	39	73	12	107	30	27	20	22	1.98
31835784--31835895	37	2.8	40	74	9	113	33	25	19	21	1.97
31836746--31836827	13	6.6	12	74	16	60	51	1	1	46	1.16
31841890--31842024	40	3.4	39	73	12	107	30	27	20	22	1.98
31841914--31842025	37	2.8	40	74	9	113	33	25	19	21	1.97
31842876--31842957	13	6.6	12	74	16	60	51	1	1	46	1.16
31844336--31844389	28	2.0	27	85	3	72	40	0	1	57	1.09
31850788--31850850	29	2.1	29	82	8	74	53	4	3	38	1.38
31862113--31862198	24	3.6	24	87	0	100	23	22	25	29	1.99
31865537--31865573	18	2.1	18	89	0	56	24	27	0	48	1.51
31871108--31871162	24	2.3	24	96	0	101	29	23	20	27	1.99
31882198--31882232	16	2.2	16	89	0	52	71	2	5	20	1.19
31883373--31883429	30	2.0	29	89	6	89	10	12	38	38	1.77
31895722--31895762	16	2.5	17	76	11	50	63	0	4	31	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31895754--31895798	24	2.0	23	82	8	56	42	0	4	53	1.21
31899420--31899463	18	2.4	18	76	0	52	22	22	45	9	1.80
31900233--31900493	49	5.3	49	71	8	199	19	26	16	37	1.93
31900209--31900545	99	3.4	99	85	2	446	18	25	18	37	1.93
31900969--31901005	18	2.1	18	89	0	56	56	10	10	21	1.64
31907051--31907133	6	14.3	6	72	16	59	40	2	2	54	1.27
31907051--31907130	28	2.8	28	81	5	90	41	2	2	53	1.27
31907063--31907123	17	3.6	17	74	14	54	39	3	1	55	1.26
31908986--31909217	30	7.7	30	85	0	277	37	21	4	37	1.73
31908986--31909217	60	3.9	60	85	1	322	37	21	4	37	1.73
31908985--31909258	30	9.1	31	75	12	91	38	20	4	36	1.73
31909255--31909344	30	3.1	29	69	18	78	35	31	0	33	1.58
31913383--31913426	11	4.0	11	84	0	61	13	22	43	20	1.87
31913384--31913426	22	2.0	22	90	0	68	13	23	41	20	1.88
31913604--31913635	6	5.2	6	92	7	55	18	0	0	81	0.70
31913604--31913635	13	2.6	12	95	5	55	18	0	0	81	0.70
31913606--31913641	9	3.9	9	85	7	54	19	0	0	80	0.71
31913604--31913642	13	3.2	12	86	10	53	17	0	0	82	0.68
31913634--31913660	14	1.9	14	100	0	54	7	0	22	70	1.12
31914136--31914187	27	1.9	27	96	0	95	32	11	11	44	1.77
31914135--31914206	27	2.7	26	84	4	90	31	11	11	45	1.75
31916758--31916782	12	2.1	12	100	0	50	48	24	8	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31917691--31917752	31	2.0	31	100	0	124	32	22	16	29	1.95
31918923--31919042	62	2.0	60	85	6	161	50	5	2	41	1.37
31920534--31920741	95	2.2	95	84	5	262	25	16	20	37	1.93
31922323--31922366	22	2.0	22	86	8	63	38	13	4	43	1.65
31927824--31927960	57	2.4	57	100	0	274	32	9	16	41	1.80
31930282--31930503	30	7.4	30	88	0	318	38	0	20	40	1.59
31930223--31930450	90	2.6	88	84	7	257	39	2	21	36	1.66
31930282--31930503	60	3.7	60	95	0	390	38	0	20	40	1.59
31931943--31931995	17	3.1	17	84	12	65	47	0	3	49	1.19
31931961--31932026	6	11.7	6	73	12	59	56	1	1	40	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126