genome.fa.s1.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  33  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10049595--10049668	20	3.7	20	87	0	76	28	31	12	28	1.93
10052888--10052921	17	1.9	18	94	5	61	47	2	0	50	1.16
10060725--10060816	43	2.1	44	83	2	114	35	2	3	58	1.26
10060725--10060796	23	3.3	22	70	18	60	40	2	2	54	1.29
10061104--10061162	31	1.9	31	85	0	82	35	0	10	54	1.34
10066661--10066716	27	2.1	27	82	0	67	55	3	3	37	1.35
10071948--10072000	28	1.9	28	88	3	81	30	9	30	30	1.89
10072036--10072136	29	3.5	28	76	18	100	36	2	27	32	1.72
10072002--10072137	59	2.3	59	89	0	200	34	2	28	34	1.70
10072122--10072192	29	2.4	29	86	9	92	35	2	18	43	1.65
10072293--10072765	162	2.9	162	91	0	793	43	13	17	25	1.85
10073532--10073556	3	8.3	3	100	0	50	36	0	0	64	0.94
10073589--10073664	3	24.7	3	74	5	62	35	2	5	56	1.36
10073589--10073659	25	2.9	24	79	6	70	36	2	5	54	1.38
10074307--10074398	6	15.5	6	69	10	64	50	5	1	43	1.32
10074307--10074383	31	2.4	32	86	8	111	49	3	1	45	1.28
10074307--10074398	17	5.5	17	78	8	82	50	5	1	43	1.32
10089001--10089047	19	2.4	20	75	3	51	31	0	8	59	1.27
10089001--10089050	20	2.5	20	80	3	57	34	0	8	58	1.28
10093328--10093374	11	4.0	11	79	15	58	31	0	2	65	1.04
10095698--10095788	6	15.2	6	92	0	128	26	16	40	16	1.89
10098231--10098300	29	2.4	30	78	7	72	51	7	2	38	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10098723--10098765	21	2.2	20	83	8	52	27	2	2	67	1.15
10116098--10116131	5	6.4	5	93	6	50	0	17	0	82	0.67
10116098--10116131	11	3.2	10	88	12	50	0	17	0	82	0.67
10116101--10116132	6	5.7	6	96	3	50	0	15	0	84	0.63
10116156--10116198	23	2.0	23	90	9	72	37	0	6	55	1.27
10116894--10117019	56	2.2	56	84	6	157	30	18	8	42	1.80
10117527--10117661	59	2.3	58	83	7	168	45	8	14	31	1.73
10124586--10124639	28	1.9	28	96	0	99	22	29	16	31	1.96
10124614--10124712	36	2.8	36	92	0	162	23	27	16	33	1.95
10132210--10132268	21	2.8	21	73	17	59	47	1	3	47	1.29
10132581--10132621	19	2.2	19	91	8	66	58	0	7	34	1.26
10137722--10137746	3	8.3	3	100	0	50	32	0	36	32	1.58
10143843--10143895	21	2.5	22	78	9	65	39	18	5	35	1.75
10143943--10143985	14	3.1	14	83	6	52	34	27	6	30	1.83
10153009--10153055	17	2.8	17	84	9	53	51	4	4	40	1.41
10161091--10161129	20	2.0	20	84	0	51	28	2	2	66	1.18
10161536--10162972	565	2.5	563	82	6	1651	31	17	17	33	1.93
10162664--10163419	371	2.0	370	82	6	913	33	16	18	31	1.93
10174497--10174549	27	2.0	27	85	7	72	67	1	26	3	1.17
10178430--10178491	28	2.2	28	85	5	90	33	3	3	59	1.29
10182349--10182421	38	1.9	38	83	8	96	34	1	4	60	1.24
10183698--10183742	22	2.0	23	83	12	58	26	28	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10187567--10187606	19	2.1	19	86	9	55	30	0	5	65	1.14
10192898--10192933	18	2.0	18	88	0	54	55	13	2	27	1.52
10193008--10193062	18	2.9	19	86	5	76	52	7	0	40	1.29
10193077--10193126	17	3.0	16	82	8	55	68	2	0	30	1.01
10197169--10197243	19	3.8	20	77	14	68	52	8	1	38	1.40
10200493--10200546	23	2.3	23	96	0	99	38	24	22	14	1.91
10210805--10210945	69	2.0	69	84	0	183	39	9	8	42	1.67
10211004--10211059	29	1.9	29	82	7	69	21	3	3	71	1.17
10211947--10211996	26	1.9	26	87	0	73	34	2	16	48	1.57
10224572--10224627	29	2.0	29	82	6	71	26	10	8	53	1.65
10225988--10226045	30	1.9	31	89	3	91	29	17	6	46	1.74
10225930--10226115	91	2.1	92	84	5	245	25	16	11	46	1.80
10226298--10226457	61	2.7	58	81	6	196	46	12	16	24	1.82
10234483--10234569	43	2.0	43	82	8	106	42	39	0	18	1.50
10234510--10234584	36	2.1	37	82	7	91	40	34	1	24	1.64
10234483--10234569	21	4.1	20	71	14	59	42	39	0	18	1.50
10240020--10240074	20	3.0	20	82	15	73	52	0	1	45	1.11
10240029--10240086	27	2.1	28	96	3	109	55	0	1	43	1.10
10240028--10240074	9	5.2	9	80	19	62	53	0	0	46	1.00
10240390--10240443	27	2.0	27	96	0	99	31	18	12	37	1.89
10241018--10241094	20	3.5	20	69	24	55	46	1	0	51	1.09
10241016--10241105	22	3.5	26	70	23	75	45	1	0	53	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10241019--10241113	48	1.9	50	89	4	149	46	1	0	52	1.07
10241059--10241116	30	2.0	29	83	10	73	48	1	0	50	1.11
10244043--10244128	41	2.1	41	93	0	145	32	13	11	41	1.81
10248371--10248428	31	1.9	31	85	3	82	41	15	6	36	1.74
10251326--10251377	17	3.1	17	78	13	63	36	1	3	57	1.28
10251363--10251395	17	1.9	17	93	0	57	36	6	6	51	1.51
10252993--10253217	30	7.6	29	85	5	272	35	23	5	36	1.77
10252993--10253217	89	2.5	89	86	5	312	35	23	5	36	1.77
10252993--10253205	59	3.6	60	89	4	317	36	23	5	35	1.77
10254299--10254331	3	11.0	3	100	0	66	66	0	0	33	0.92
10254815--10254874	20	3.2	18	75	13	59	30	1	5	63	1.25
10255454--10255501	23	2.2	21	88	7	69	72	2	0	25	0.95
10256121--10256164	19	2.2	20	88	4	63	34	0	2	63	1.07
10256123--10256187	33	1.9	34	84	9	89	38	1	4	55	1.30
10256324--10256401	29	2.6	30	71	16	72	41	2	20	35	1.66
10259674--10260026	80	4.4	79	89	2	510	33	25	18	22	1.97
10259674--10260026	159	2.2	160	89	1	539	33	25	18	22	1.97
10262405--10262558	40	3.8	40	82	0	155	33	19	17	29	1.95
10262405--10262558	80	1.9	80	81	0	182	33	19	17	29	1.95
10266338--10266392	29	2.0	28	82	7	67	49	0	29	21	1.50
10273287--10273336	17	3.0	17	77	8	50	50	2	0	48	1.12
10275054--10275108	28	2.0	28	89	3	85	34	20	20	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10276772--10276840	34	2.0	34	94	0	120	21	28	8	40	1.83
10278313--10278357	24	1.9	24	86	4	65	4	22	15	57	1.56
10278564--10278590	6	4.5	6	100	0	54	37	0	44	18	1.50
10286111--10286147	16	2.2	17	86	13	51	48	0	0	51	1.00
10302020--10302066	25	2.0	23	87	8	67	34	2	4	59	1.29
10305909--10305988	33	2.4	33	100	0	160	22	46	2	28	1.65
10310126--10310303	39	4.6	39	76	5	135	18	20	21	39	1.93
10312630--10312724	49	1.9	49	82	4	120	24	14	28	32	1.95
10323028--10323359	161	2.1	161	92	1	549	27	16	15	40	1.88
10323447--10323493	22	2.1	22	92	0	76	48	8	23	19	1.75
10327221--10327287	20	3.4	19	87	4	71	46	0	1	52	1.09
10327239--10327287	19	2.5	20	93	3	82	46	0	0	53	1.00
10327265--10327297	16	2.0	17	88	5	50	51	0	0	48	1.00
10328849--10329231	196	2.0	196	93	1	660	31	18	22	27	1.97
10331453--10331487	18	1.9	18	88	0	52	57	0	2	40	1.14
10331588--10331630	6	7.2	6	86	0	59	76	4	0	18	0.95
10338415--10338452	6	6.3	6	100	0	76	34	18	0	47	1.49
10346214--10346254	21	1.9	22	90	5	66	46	4	2	46	1.37
10349464--10349497	18	1.9	18	88	5	52	29	0	5	64	1.17
10355639--10355665	6	4.5	6	100	0	54	29	70	0	0	0.88
10369114--10369183	22	3.2	22	72	8	70	34	2	12	50	1.56
10371997--10372061	27	2.4	27	77	10	69	47	1	6	44	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10372269--10372341	27	2.7	27	82	14	73	52	0	1	46	1.09
10372296--10372341	21	2.2	21	84	7	58	54	0	0	45	0.99
10372301--10372349	24	2.1	23	81	11	55	55	0	2	42	1.11
10372586--10372628	20	2.2	19	84	16	52	34	0	11	53	1.37
10375213--10375271	23	2.5	24	78	13	59	44	1	1	52	1.21
10375644--10375904	130	2.0	129	89	2	398	27	18	23	30	1.98
10383885--10383942	23	2.4	23	85	5	71	72	3	10	13	1.24
10384754--10384796	19	2.3	19	84	8	52	58	4	0	37	1.19
10385362--10385552	102	1.9	103	87	5	289	26	25	13	35	1.92
10385377--10385589	102	2.1	102	81	7	254	27	24	11	36	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126