genome.fa.s1.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  76  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22742140--22742203	22	3.2	22	71	28	79	34	28	0	37	1.57
22742138--22742201	17	3.6	17	75	19	67	32	26	0	40	1.56
22758553--22758633	36	2.2	36	97	0	153	11	34	11	43	1.76
22772907--22772958	20	2.5	22	82	14	58	44	0	13	42	1.44
22781202--22781415	94	2.3	94	86	0	293	28	23	25	22	1.99
22786096--22786126	4	7.8	4	100	0	62	25	0	22	51	1.48
22800336--22800405	11	6.5	11	73	18	58	20	1	5	72	1.12
22800336--22800382	17	3.1	14	82	14	58	21	0	4	74	0.99
22800336--22800407	21	3.3	21	79	14	67	19	1	6	72	1.15
22800336--22800398	31	2.0	32	82	14	78	20	1	4	73	1.11
22816511--22816716	106	1.9	106	86	1	288	38	13	16	32	1.86
22818447--22818481	16	2.2	16	89	0	52	68	5	0	25	1.11
22818596--22818622	7	3.9	7	100	0	54	74	0	0	25	0.83
22821137--22821201	18	3.6	18	81	4	60	26	38	24	10	1.88
22821260--22821320	27	2.3	27	82	0	77	29	16	26	27	1.97
22821748--22821805	21	2.8	21	80	15	66	12	3	27	56	1.51
22821877--22821921	9	5.5	8	87	7	56	51	33	0	15	1.44
22821877--22821909	9	3.8	9	96	4	59	48	39	0	12	1.40
22821877--22821921	17	2.8	16	83	12	56	51	33	0	15	1.44
22822741--22822873	26	5.0	26	85	1	167	55	12	0	31	1.42
22825395--22825453	21	2.8	21	84	0	82	35	25	15	23	1.94
22826193--22826381	52	3.6	52	92	0	306	35	26	14	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22826141--22826383	104	2.3	106	86	3	330	35	24	13	25	1.92
22832155--22832295	71	2.0	71	90	0	219	24	21	18	36	1.95
22840830--22840977	71	2.1	70	87	3	208	22	18	22	35	1.96
22843679--22843715	10	3.5	10	89	10	56	0	18	0	81	0.70
22843676--22843713	16	2.5	16	87	8	53	0	18	0	81	0.69
22844434--22844481	21	2.3	21	86	13	64	6	25	10	58	1.54
22860055--22860091	18	2.1	18	94	0	65	45	18	21	13	1.84
22861437--22861523	39	2.2	39	84	8	106	16	4	39	40	1.69
22864121--22864176	16	3.5	17	76	13	57	37	1	1	58	1.19
22865806--22865927	23	5.5	22	70	14	90	59	1	10	28	1.41
22865855--22865939	43	1.9	43	86	11	118	56	0	10	32	1.34
22867795--22868018	42	5.3	42	82	2	270	29	19	21	29	1.98
22867795--22868031	85	2.8	84	87	1	296	29	19	21	29	1.98
22867798--22868031	84	2.8	85	86	1	310	29	20	21	29	1.98
22870626--22870656	16	1.9	16	93	0	53	22	22	0	54	1.44
22870987--22871176	42	4.4	42	80	5	193	26	16	27	30	1.97
22871000--22871171	44	3.9	45	82	3	208	25	17	26	31	1.97
22872388--22872740	53	6.6	53	90	0	490	29	15	19	35	1.93
22873795--22873957	49	3.3	47	78	10	150	19	28	14	37	1.91
22874734--22874938	74	2.8	72	77	10	188	8	27	9	54	1.61
22874909--22874970	27	2.6	22	75	22	54	1	17	1	79	0.90
22878530--22878636	21	4.8	21	69	16	63	56	1	10	31	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22878529--22878667	68	2.1	68	81	12	164	59	1	8	30	1.36
22885309--22885564	58	4.4	58	81	10	274	36	3	27	32	1.75
22885518--22885718	30	6.7	30	87	6	293	33	3	26	36	1.73
22885516--22885713	59	3.3	58	90	4	297	33	3	25	37	1.73
22885348--22885718	119	3.1	117	82	11	354	35	4	26	34	1.75
22885815--22886125	163	1.9	161	87	7	450	47	12	15	24	1.79
22886362--22886405	18	2.5	18	77	3	54	0	50	0	50	1.00
22887524--22887554	15	2.1	15	100	0	62	12	12	54	19	1.70
22887673--22887733	14	4.5	14	85	8	90	16	18	29	36	1.92
22887673--22887733	26	2.2	28	88	5	90	16	18	29	36	1.92
22887760--22887828	17	4.1	16	83	12	77	52	2	1	43	1.25
22887777--22887831	6	9.7	6	76	11	62	52	1	1	43	1.22
22887776--22887838	11	5.5	11	83	5	81	53	1	3	41	1.26
22888184--22888656	68	6.9	68	92	1	716	29	20	16	34	1.94
22888259--22888378	38	3.4	37	68	15	108	34	20	10	34	1.88
22888297--22888620	31	9.7	31	68	18	179	29	20	16	33	1.94
22900651--22900859	59	3.6	59	90	1	314	37	5	27	29	1.80
22900704--22900868	29	5.7	29	66	12	106	36	6	26	30	1.81
22900850--22901019	30	5.6	30	86	4	252	32	3	25	37	1.73
22900650--22901018	59	6.2	58	86	8	291	35	5	26	33	1.79
22900848--22901019	61	2.8	60	94	3	301	32	4	25	37	1.75
22901117--22901429	161	1.9	161	88	5	472	46	12	15	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22901666--22901709	18	2.5	18	77	3	54	0	50	0	50	1.00
22902830--22902860	15	2.1	15	100	0	62	12	12	54	19	1.70
22903080--22903134	6	9.7	6	76	7	53	52	3	1	41	1.29
22903063--22903112	22	2.3	22	86	13	68	54	4	0	42	1.19
22903079--22903141	11	5.5	11	77	9	65	53	3	3	39	1.33
22903073--22903148	17	4.5	16	79	9	53	55	3	2	38	1.33
22906298--22906370	37	2.0	37	94	0	128	36	17	17	27	1.93
22907961--22908000	20	2.0	20	90	0	62	37	17	22	22	1.94
22908108--22908195	28	3.1	28	77	6	97	32	15	26	25	1.96
22908269--22908321	24	2.2	25	86	10	74	33	1	9	54	1.43
22919119--22919223	25	4.2	25	87	0	156	20	19	27	33	1.96
22919119--22919260	50	2.8	50	82	5	162	22	19	26	30	1.98
22920646--22920789	39	3.6	40	78	10	116	31	28	15	25	1.95
22924796--22924827	15	2.1	15	100	0	64	37	28	6	28	1.81
22925549--22925768	94	2.4	94	86	2	293	27	17	25	29	1.98
22926536--22926589	21	2.6	21	75	0	63	31	7	24	37	1.83
22927746--22927831	36	2.4	36	92	0	136	20	16	22	40	1.91
22928315--22928508	51	3.8	50	82	4	237	38	12	13	36	1.82
22928291--22928516	50	4.4	50	80	6	240	36	12	12	38	1.81
22928291--22928521	102	2.3	102	84	4	306	37	12	12	37	1.81
22929313--22929385	28	2.6	28	80	0	92	31	19	31	17	1.95
22929459--22929504	24	1.9	24	81	0	56	34	6	10	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22935791--22935841	21	2.4	22	74	12	52	60	1	11	25	1.41
22935951--22936028	15	5.2	14	75	14	59	71	1	5	21	1.12
22935949--22936020	36	2.0	37	86	8	103	70	1	6	20	1.18
22935951--22936032	7	11.1	7	77	13	51	71	1	4	21	1.11
22939142--22939204	24	2.6	24	87	0	90	25	14	9	50	1.72
22940296--22940976	42	16.9	41	81	10	721	24	17	26	30	1.97
22940289--22940976	81	8.6	80	79	8	675	24	17	26	31	1.97
22940296--22940965	123	5.6	120	79	10	683	24	17	26	30	1.97
22940770--22940832	31	2.0	31	90	0	99	28	23	17	30	1.97
22940728--22940949	73	2.9	74	81	14	231	25	17	25	31	1.97
22940801--22940976	41	4.3	42	88	5	254	25	17	28	29	1.97
22942161--22942246	15	5.2	16	76	19	88	1	18	0	80	0.78
22942162--22942245	6	13.8	6	78	15	59	1	19	0	79	0.79
22942189--22942247	8	7.6	8	83	7	59	0	15	0	84	0.62
22942195--22942238	1	44.0	1	81	0	52	0	9	0	90	0.44
22942189--22942238	8	6.4	8	84	13	68	0	12	0	88	0.53
22943154--22943203	15	3.2	16	86	5	68	0	20	0	80	0.72
22947628--22947713	7	12.3	7	76	4	59	29	18	22	30	1.97
22947629--22947675	21	2.2	21	88	0	67	29	23	21	25	1.99
22947628--22947702	28	2.7	28	80	0	96	30	20	21	28	1.98
22965220--22965255	7	5.1	7	100	0	72	27	0	58	13	1.36
22966417--22966454	19	2.0	19	89	0	58	34	21	10	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22967056--22967181	63	2.0	63	92	3	211	46	0	26	26	1.53
22969755--22969807	4	13.2	4	80	7	54	66	0	32	1	1.03
22969759--22969807	21	2.5	19	90	6	71	65	0	32	2	1.04
22969754--22969800	25	1.9	24	95	4	85	63	0	36	0	0.94
22974371--22974485	21	5.5	21	73	12	83	26	1	24	46	1.62
22974386--22974481	7	13.7	7	71	12	54	27	2	23	46	1.63
22974384--22974481	28	3.5	28	81	0	115	27	2	24	45	1.64
22974779--22974823	19	2.4	19	96	0	81	40	20	22	17	1.92
22982407--22982456	16	3.2	16	73	21	52	34	0	6	60	1.21
22983116--22983193	23	3.3	22	71	20	59	65	10	0	24	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126