genome.fa.s1.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  85  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26254120--26254385	30	8.9	29	83	5	273	36	24	1	37	1.66
26254120--26254385	90	3.0	89	82	5	315	36	24	1	37	1.66
26255721--26255781	31	2.1	28	84	9	77	63	0	8	27	1.22
26257759--26257809	24	2.1	25	85	3	68	58	11	7	21	1.58
26259736--26259781	24	1.9	24	86	0	65	52	2	17	28	1.56
26265999--26266083	40	2.1	40	93	0	143	22	22	9	45	1.80
26266111--26266216	40	2.6	40	90	3	158	29	21	13	35	1.91
26272734--26272870	40	3.4	40	87	2	204	23	26	8	42	1.81
26272900--26273003	41	2.5	41	93	1	172	28	23	10	37	1.88
26277898--26277940	19	2.3	19	84	8	52	58	4	0	37	1.19
26283061--26283103	19	2.3	19	84	8	52	58	4	0	37	1.19
26299565--26299609	15	3.3	15	76	17	53	66	4	28	0	1.11
26299552--26299612	12	4.8	12	71	16	52	65	3	31	0	1.09
26308731--26308764	15	2.3	15	90	5	52	11	8	5	73	1.24
26311140--26311186	24	2.0	24	100	0	94	38	0	40	21	1.53
26316859--26316896	10	3.7	10	92	3	58	23	0	26	50	1.50
26317103--26317145	18	2.4	18	80	3	52	62	2	18	16	1.43
26343645--26343696	24	2.2	24	86	3	70	26	13	7	51	1.67
26365507--26365568	28	2.2	28	94	0	106	19	11	27	41	1.85
26377167--26377222	28	2.1	25	83	9	67	48	3	3	44	1.37
26384355--26384416	20	3.1	20	85	0	70	32	9	20	37	1.86
26385251--26385310	17	3.6	17	71	11	52	38	6	1	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26392393--26392466	29	2.6	29	80	8	80	40	10	17	31	1.84
26394560--26394596	3	12.7	3	88	5	58	0	32	0	67	0.91
26397514--26397590	32	2.4	33	85	8	90	29	3	3	62	1.31
26399541--26399779	125	1.9	123	86	1	334	31	12	16	39	1.86
26400392--26400435	16	2.8	17	83	10	58	45	0	0	54	0.99
26401147--26401187	19	2.2	19	100	0	82	19	24	21	34	1.97
26401484--26401644	59	2.7	58	77	5	153	26	15	12	45	1.81
26401844--26401936	30	3.1	30	83	10	111	49	8	12	29	1.71
26401844--26401936	31	3.1	30	82	10	111	49	8	12	29	1.71
26401861--26401948	30	2.9	31	81	5	90	53	7	12	26	1.65
26402690--26402876	57	3.2	57	77	11	200	27	16	16	39	1.90
26402798--26403079	99	2.8	98	81	8	311	28	15	15	39	1.89
26407558--26407934	60	6.5	59	76	14	342	38	14	18	27	1.90
26408931--26408982	26	2.0	25	88	3	77	23	13	9	53	1.68
26408910--26409090	57	3.1	56	75	13	179	26	13	10	49	1.75
26409302--26409410	31	3.8	29	78	8	107	54	8	10	27	1.62
26409359--26409413	27	2.1	26	93	3	92	65	5	5	23	1.35
26409363--26409423	27	2.2	27	85	5	77	60	6	8	24	1.49
26420551--26420792	109	2.3	106	81	6	267	38	16	14	30	1.89
26421209--26421377	30	5.7	29	77	9	162	39	4	21	34	1.74
26423380--26423470	46	1.9	49	91	6	152	49	12	3	35	1.56
26430558--26430583	13	2.0	13	100	0	52	38	23	15	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26438740--26438783	22	2.0	22	86	8	63	34	0	0	65	0.93
26438731--26438808	30	2.8	28	76	18	81	32	0	0	67	0.90
26440105--26440164	19	3.0	20	79	18	54	55	0	0	45	0.99
26457650--26457690	17	2.4	18	80	19	52	17	21	14	46	1.84
26457741--26458100	193	1.9	189	84	2	477	27	26	17	28	1.97
26460305--26460418	56	2.0	56	100	0	228	34	20	7	38	1.79
26465683--26466051	193	1.9	192	93	1	632	38	25	13	22	1.91
26470169--26470206	14	2.6	15	87	4	51	15	5	2	76	1.08
26476831--26476884	21	2.6	21	84	0	63	31	24	14	29	1.95
26477561--26477644	25	3.2	25	77	5	87	38	26	15	20	1.92
26477570--26477655	27	3.3	27	71	9	70	40	24	12	22	1.89
26483097--26483127	16	2.0	15	93	6	53	51	0	0	48	1.00
26487812--26487996	96	1.9	96	80	6	214	36	14	17	31	1.90
26488226--26488332	29	3.6	30	78	9	87	34	5	28	30	1.80
26488227--26488443	30	7.3	29	74	15	153	38	6	25	29	1.81
26488231--26488426	59	3.3	58	82	11	220	38	6	25	30	1.80
26488251--26488442	30	6.4	31	74	16	165	39	6	25	29	1.80
26488286--26488450	59	2.8	60	86	6	203	39	6	23	31	1.79
26490276--26490373	6	17.0	6	69	12	53	55	4	1	39	1.26
26490294--26490356	17	3.7	17	81	6	83	57	4	1	36	1.30
26490291--26490360	34	2.1	34	86	5	97	60	4	1	34	1.25
26495748--26495790	17	2.5	17	76	0	50	18	16	13	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26496075--26496204	63	2.1	63	98	0	251	36	11	20	31	1.88
26506724--26506753	16	1.9	16	93	6	53	20	16	3	60	1.50
26508030--26508064	18	1.9	18	88	0	52	65	2	31	0	1.07
26512638--26512711	36	2.1	36	86	0	103	44	14	4	36	1.65
26512992--26513052	29	2.1	29	90	0	95	44	18	1	36	1.59
26513039--26513261	45	5.0	45	84	0	275	43	17	5	33	1.72
26513752--26514003	28	8.9	28	80	5	274	50	9	16	24	1.74
26513761--26513983	57	3.9	57	89	0	304	49	9	16	24	1.75
26513752--26514003	85	3.0	84	83	5	301	50	9	16	24	1.74
26520930--26520975	21	2.2	21	84	0	56	56	10	28	4	1.53
26525662--26525799	39	3.6	39	84	2	192	41	19	16	22	1.90
26526519--26526572	22	2.5	23	80	14	62	40	11	7	40	1.69
26527235--26527270	14	2.6	14	91	4	56	38	22	8	30	1.83
26527228--26527266	20	2.0	20	89	0	60	35	28	7	28	1.85
26528489--26528702	115	1.9	112	86	7	306	32	11	9	46	1.73
26530233--26530280	17	2.7	18	84	9	55	45	2	8	43	1.45
26530233--26530280	18	2.7	18	83	3	62	45	2	8	43	1.45
26530827--26530984	41	3.9	39	77	8	147	31	16	22	29	1.96
26531171--26531800	49	12.9	49	76	6	452	17	31	17	33	1.94
26531171--26531745	97	5.9	97	79	4	519	17	31	17	33	1.93
26540181--26540224	16	2.8	16	100	0	88	61	0	6	31	1.22
26542335--26542546	114	1.9	113	85	7	290	31	12	9	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26544475--26544518	19	2.2	21	84	11	58	38	0	4	56	1.20
26552966--26553007	18	2.3	19	92	8	70	59	2	0	38	1.10
26552968--26553009	19	2.3	18	83	4	57	61	2	0	35	1.09
26555419--26555471	27	2.0	27	96	0	97	32	15	20	32	1.93
26557906--26557944	2	19.5	2	100	0	78	0	48	0	51	1.00
26561769--26561824	25	2.2	24	77	22	62	35	1	3	58	1.26
26561545--26561905	145	2.6	140	83	10	438	34	0	15	49	1.49
26562431--26562506	30	2.6	29	91	6	127	34	0	2	63	1.09
26565496--26565953	230	2.0	230	96	0	853	27	24	14	33	1.94
26569214--26569257	8	5.5	8	86	8	63	2	13	0	84	0.73
26569208--26569251	15	3.1	15	87	9	65	4	13	0	81	0.83
26569851--26569889	18	2.2	17	90	4	60	53	12	17	15	1.72
26579733--26579826	6	16.3	6	73	12	72	40	0	3	56	1.15
26579733--26579826	17	5.5	17	83	2	125	40	0	3	56	1.15
26579733--26579828	11	8.5	11	72	13	61	41	0	3	55	1.16
26579744--26579806	23	2.7	24	80	11	69	38	0	4	57	1.20
26579876--26579904	12	2.3	13	94	5	51	48	27	3	20	1.66
26581576--26581869	30	9.9	30	76	9	194	36	24	4	35	1.74
26581590--26581809	59	3.7	58	81	6	246	36	24	3	35	1.73
26581774--26582073	59	5.1	58	81	2	312	33	23	6	38	1.79
26581792--26582137	29	11.9	29	72	13	228	32	24	6	35	1.82
26581979--26582137	30	5.5	29	70	14	71	30	30	8	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26581775--26582073	118	2.5	118	84	2	395	33	22	6	38	1.79
26582374--26582565	96	2.0	96	85	4	262	26	17	17	39	1.91
26592145--26592201	11	5.0	11	79	10	53	36	0	3	59	1.14
26592146--26592222	6	13.3	6	75	13	63	41	0	2	55	1.13
26592146--26592222	17	4.5	17	81	3	100	41	0	2	55	1.13
26593101--26593145	21	2.0	23	83	8	58	62	2	15	20	1.43
26593989--26594204	59	3.7	57	80	5	227	38	22	2	35	1.69
26594048--26594414	58	6.3	59	77	11	239	35	24	5	35	1.78
26594017--26594332	29	10.8	29	73	13	197	35	23	4	36	1.74
26594136--26594297	87	1.9	87	84	6	222	35	24	4	35	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126