genome.fa.s1.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  50  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14954888--14954940	25	2.2	25	83	12	67	24	5	1	67	1.22
14955458--14955568	23	4.8	23	89	3	152	28	11	19	39	1.87
14955453--14955545	12	7.8	12	67	19	52	27	12	19	39	1.88
14955534--14955579	23	2.0	23	83	8	58	39	10	17	32	1.84
14956335--14956378	19	2.3	18	81	11	52	36	2	2	59	1.23
14961621--14961676	20	2.9	21	76	10	57	28	0	8	62	1.25
14965639--14965991	69	5.1	68	74	11	256	28	24	16	30	1.97
14965594--14965876	33	8.4	31	74	13	188	28	24	16	30	1.97
14965591--14965937	102	3.4	102	90	0	523	28	25	16	29	1.97
14966626--14966669	16	2.8	16	83	10	56	27	20	4	47	1.69
14968714--14969159	156	2.8	156	87	3	601	30	24	23	20	1.98
14969294--14969360	2	33.5	2	100	0	134	50	0	0	49	1.00
14969788--14969870	40	2.1	40	93	0	139	20	25	6	48	1.72
14971965--14972033	30	2.3	30	82	0	75	21	24	26	27	1.99
14973182--14973228	21	2.2	21	77	7	51	10	31	4	53	1.55
14973320--14973368	16	3.0	16	78	3	53	8	24	2	65	1.31
14973329--14973364	16	2.3	16	90	4	56	8	22	2	66	1.31
14997854--14997890	15	2.5	15	91	4	58	40	21	0	37	1.54
15003852--15003876	13	1.9	13	100	0	50	40	20	24	16	1.91
15006680--15007044	39	9.4	37	70	10	185	23	32	19	24	1.97
15006680--15007078	78	5.1	78	82	2	444	23	33	19	24	1.97
15006797--15007078	39	7.3	39	71	10	184	23	33	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15008284--15008340	30	1.9	30	85	0	78	40	1	1	56	1.20
15009296--15009695	29	13.6	30	79	6	365	37	25	1	36	1.65
15009325--15009695	59	6.3	58	76	9	322	36	25	1	36	1.65
15014685--15014779	50	1.9	50	86	4	138	43	3	14	38	1.62
15018710--15018974	126	2.1	126	97	2	507	29	28	6	36	1.81
15021206--15021296	44	2.0	44	85	2	119	14	13	17	54	1.70
15023858--15023899	22	1.9	22	85	9	59	52	0	7	40	1.29
15028914--15029130	37	5.9	36	75	10	152	33	31	20	14	1.93
15028911--15029130	74	3.0	74	78	6	212	33	31	20	14	1.92
15028929--15029130	111	1.8	111	83	2	271	33	31	20	14	1.93
15036572--15036725	75	2.0	75	85	6	202	59	17	8	14	1.60
15045750--15045825	27	2.9	27	70	24	72	34	0	5	60	1.19
15045349--15045942	296	2.0	296	83	7	750	33	0	13	51	1.46
15045931--15045970	17	2.4	17	95	0	71	30	0	17	52	1.45
15046072--15046119	20	2.3	21	79	13	55	37	10	8	43	1.69
15047186--15047285	43	2.3	43	92	0	173	30	12	14	44	1.81
15051697--15051723	13	2.1	13	100	0	54	22	7	14	55	1.64
15055738--15055781	20	2.2	20	87	0	61	34	20	15	29	1.94
15058149--15058250	27	3.8	27	79	5	100	16	26	29	27	1.97
15058149--15058262	27	4.3	26	76	9	88	17	26	28	27	1.98
15060171--15060242	29	2.4	29	79	11	74	31	1	1	65	1.10
15060337--15060367	15	2.1	15	100	0	62	41	6	6	45	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15062160--15062185	13	2.0	13	100	0	52	38	30	15	15	1.88
15065324--15065368	23	1.9	24	81	4	56	44	4	0	51	1.21
15070078--15070275	30	6.6	30	81	5	179	39	22	4	33	1.74
15070078--15070269	60	3.2	59	77	10	217	40	21	4	33	1.72
15070057--15070275	90	2.4	90	83	6	271	38	22	4	34	1.73
15082025--15082193	79	2.1	79	84	7	218	31	24	17	27	1.97
15082046--15082175	40	3.3	39	68	11	102	32	24	18	24	1.97
15082191--15082299	50	2.2	49	85	1	137	33	21	23	21	1.97
15084224--15084523	30	10.1	30	81	6	252	37	23	6	33	1.79
15084246--15084523	89	3.1	87	76	4	268	38	23	6	32	1.79
15096558--15096623	27	2.6	24	81	15	71	21	4	6	68	1.30
15096558--15096624	26	2.6	25	77	15	66	20	4	5	68	1.29
15097796--15097845	22	2.3	21	80	12	57	62	0	0	38	0.96
15097805--15097884	27	2.9	27	79	9	72	58	3	0	37	1.16
15097805--15097870	27	2.4	28	82	7	73	63	3	0	33	1.10
15098478--15098555	31	2.7	29	83	13	90	50	1	1	47	1.17
15099268--15099393	65	1.9	65	82	6	157	36	12	12	38	1.82
15099998--15100033	14	2.6	14	90	0	54	36	2	13	47	1.58
15104289--15104347	22	2.8	21	77	10	57	30	23	16	28	1.97
15105082--15105174	25	3.7	25	75	5	98	37	22	17	22	1.94
15105063--15105176	25	4.6	25	73	4	95	38	23	14	22	1.92
15110053--15110084	16	2.0	16	93	0	55	3	0	12	84	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15110162--15110516	46	7.8	46	82	7	384	25	13	24	36	1.92
15110182--15110516	92	3.7	89	86	5	440	25	12	25	36	1.92
15110162--15110516	138	2.6	136	82	7	430	25	13	24	36	1.92
15115084--15115137	22	2.5	21	79	8	63	50	11	12	25	1.74
15126588--15126629	6	7.2	6	89	10	61	80	0	19	0	0.70
15141564--15143085	73	20.8	73	81	7	1408	35	15	21	27	1.93
15141557--15143085	38	41.7	37	80	8	1435	35	15	21	27	1.93
15142778--15143084	34	8.7	35	77	12	190	37	14	21	25	1.92
15143234--15143291	22	2.9	21	80	12	59	56	10	5	27	1.54
15143641--15143833	94	2.1	94	90	0	305	52	20	8	18	1.71
15148148--15148191	18	2.5	18	88	3	63	59	13	11	15	1.62
15148293--15148331	19	2.1	19	85	4	53	2	23	5	69	1.21
15155827--15156025	41	4.8	41	80	6	213	38	10	24	26	1.88
15155877--15156030	82	1.9	82	95	0	281	38	10	24	27	1.88
15162979--15163163	41	4.5	40	85	4	226	37	10	26	25	1.88
15162937--15163163	82	2.7	83	84	3	287	37	10	25	25	1.88
15172615--15172667	13	4.1	13	80	4	54	37	5	16	39	1.73
15173745--15173863	63	1.9	63	81	6	143	42	22	9	26	1.83
15175575--15175606	13	2.4	13	94	5	55	31	0	15	53	1.43
15176698--15176997	36	8.3	36	78	8	254	37	12	22	27	1.90
15176725--15176997	71	3.8	71	79	6	221	38	11	21	27	1.89
15176697--15176995	108	2.8	108	79	8	286	37	12	22	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15177166--15177217	21	2.4	21	75	18	54	65	1	3	28	1.21
15177183--15177224	21	2.0	22	90	4	68	59	2	4	33	1.31
15178297--15178407	21	5.2	22	79	7	122	7	6	18	67	1.36
15178311--15178401	43	2.1	44	85	4	123	7	5	16	70	1.30
15178385--15178519	12	11.9	12	71	12	88	10	5	16	68	1.36
15178373--15178519	35	4.0	36	77	12	118	10	4	15	69	1.33
15178344--15178513	23	7.7	22	71	13	93	10	5	15	68	1.35
15178439--15178504	20	3.2	20	75	8	69	10	6	16	66	1.41
15183416--15183497	40	2.0	40	97	0	155	29	6	26	37	1.80
15186194--15186247	13	4.2	13	78	4	56	57	5	0	37	1.22
15190009--15190039	14	2.1	15	94	5	55	77	3	0	19	0.90
15198274--15198316	3	14.3	3	100	0	86	32	0	0	67	0.91
15198603--15198637	18	2.0	18	88	5	54	5	2	20	71	1.19
15199948--15199998	26	2.0	26	92	7	86	23	15	7	52	1.68
15202542--15202595	13	4.2	12	77	17	56	46	1	0	51	1.11
15203691--15203721	2	15.5	2	100	0	62	51	0	0	48	1.00
15204060--15204211	69	2.2	69	87	0	214	24	21	28	25	1.99
15208741--15208794	25	2.1	26	82	3	65	64	11	7	16	1.47
15208790--15208820	5	6.0	5	92	7	53	77	0	22	0	0.77
15208790--15208820	16	1.9	16	100	0	62	77	0	22	0	0.77
15212402--15212529	64	2.1	58	76	16	150	36	16	6	40	1.74
15212442--15212540	32	3.1	31	68	16	76	40	16	3	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15214507--15214587	23	3.6	23	70	12	69	64	1	2	32	1.15
15214549--15214598	23	2.2	22	86	10	66	72	2	0	26	0.96
15214992--15215049	29	2.0	29	86	10	82	58	0	5	36	1.20
15215240--15215290	24	2.2	23	82	10	59	31	0	0	68	0.90
15215443--15215518	39	2.0	38	82	10	93	39	2	2	55	1.28
15215685--15215709	13	1.9	13	100	0	50	60	8	16	16	1.58
15220003--15220046	3	14.7	3	100	0	88	34	0	0	65	0.93
15220142--15220262	25	5.0	24	73	10	72	54	2	8	34	1.44
15220184--15220282	6	16.7	6	67	10	51	56	1	9	33	1.37
15220161--15220206	19	2.5	19	86	10	60	47	2	8	41	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126