genome.fa.s1.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032244.1 Gossypioides kirkii chromosome KI_01
Parameters: 2 7 7 80 10 50 1000
Length:  38174113

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   

This is table  87  of  126  ( 15035 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26845061--26845094	17	2.0	17	94	0	59	20	2	0	76	0.92
26844972--26845077	29	3.6	30	81	6	110	34	1	1	61	1.18
26848852--26848983	42	3.1	43	74	11	112	29	20	21	28	1.98
26849592--26849673	17	4.8	17	78	4	85	47	1	1	50	1.16
26849593--26849673	6	14.0	6	70	17	64	48	1	1	49	1.17
26850322--26850362	3	13.0	3	90	10	64	63	4	0	31	1.15
26850325--26850362	10	3.9	10	96	3	69	63	5	0	31	1.17
26850322--26850362	13	3.2	12	90	10	64	63	4	0	31	1.15
26850320--26850373	23	2.4	22	78	6	63	57	3	1	37	1.27
26851138--26851448	162	1.9	162	86	3	439	26	14	13	45	1.82
26851545--26851866	30	10.8	30	81	5	318	37	24	3	34	1.72
26851840--26852040	59	3.4	59	73	6	174	30	28	4	36	1.77
26855116--26855163	24	2.0	24	83	0	60	22	16	12	47	1.80
26859387--26859412	6	4.3	6	100	0	52	65	0	0	34	0.93
26859855--26859923	19	3.6	19	79	12	63	57	4	2	34	1.33
26860121--26860165	23	2.0	23	82	8	56	35	6	4	53	1.47
26861186--26861223	16	2.2	18	86	9	53	55	5	15	23	1.61
26861186--26861224	18	2.4	16	87	12	53	53	5	15	25	1.62
26864838--26864889	21	2.5	20	84	3	68	32	9	23	34	1.87
26868703--26868743	14	2.9	14	80	20	50	63	4	12	19	1.46
26868831--26868941	28	3.9	28	75	14	93	39	1	23	35	1.65
26868854--26869210	30	12.3	29	72	14	170	35	3	26	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26868950--26869145	29	6.7	30	76	5	154	34	3	26	36	1.72
26868958--26869198	59	4.1	57	81	10	247	34	3	26	36	1.73
26868910--26869198	30	9.9	30	77	10	244	34	3	25	35	1.73
26870971--26871026	17	3.4	16	82	2	67	57	1	3	37	1.27
26871439--26871896	39	11.8	39	77	6	371	24	19	31	23	1.98
26871438--26871898	78	5.9	78	81	4	518	25	19	31	23	1.98
26883610--26883650	19	2.2	19	86	8	57	48	9	14	26	1.75
26883837--26884264	29	14.8	29	77	11	281	34	2	25	37	1.70
26883837--26884291	57	7.8	59	78	6	326	34	2	25	37	1.69
26883810--26884304	29	17.1	29	76	8	273	34	2	26	36	1.70
26885109--26885165	17	3.4	17	82	0	78	54	3	3	38	1.35
26889566--26889596	15	2.0	16	93	6	55	61	0	0	38	0.96
26890048--26890098	27	1.9	26	88	11	77	47	3	5	43	1.46
26893568--26893619	21	2.5	21	84	6	70	30	28	13	26	1.94
26894372--26894825	195	2.3	193	81	6	493	26	26	18	28	1.98
26895989--26896037	19	2.9	17	77	20	50	61	4	26	8	1.42
26897135--26897171	18	2.1	18	89	0	56	48	0	27	24	1.51
26908772--26908922	78	1.9	78	97	0	284	22	9	17	50	1.75
26912390--26912441	21	2.5	21	81	6	61	30	30	13	25	1.94
26913180--26913368	52	3.7	52	85	3	256	32	23	13	30	1.93
26922165--26922271	21	5.1	21	76	8	83	14	35	18	31	1.91
26922165--26922313	42	3.5	42	82	3	158	14	32	19	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26922858--26922916	28	2.1	28	96	0	109	44	3	23	28	1.70
26924341--26924590	124	2.0	124	100	0	500	41	16	18	24	1.89
26933625--26933918	144	2.0	145	90	3	459	37	9	12	40	1.75
26934378--26934420	7	6.0	7	82	15	52	60	0	0	39	0.97
26934377--26934420	22	2.0	22	86	8	63	61	0	0	38	0.96
26936095--26936132	14	2.9	13	81	11	51	71	2	0	26	1.00
26938167--26938247	25	3.2	25	67	8	74	40	0	0	59	0.98
26938152--26938255	50	2.1	51	98	1	201	46	0	0	53	1.00
26940254--26940542	143	2.0	143	99	0	569	37	18	19	24	1.94
26950866--26950894	10	2.9	10	100	0	58	41	41	0	17	1.49
26955912--26956134	123	1.8	122	83	3	295	21	21	16	39	1.91
26955969--26956384	220	1.9	221	86	1	593	22	24	17	35	1.95
26969031--26969078	14	3.5	14	83	8	55	81	0	18	0	0.70
26969043--26969079	18	2.1	18	90	10	58	81	0	18	0	0.70
26969032--26969083	26	2.0	24	82	10	59	80	0	19	0	0.71
26975931--26976169	51	4.7	51	88	4	342	33	15	22	29	1.94
26976798--26976854	21	2.5	24	86	8	75	28	5	28	38	1.78
26982547--26982783	51	4.6	51	93	0	384	31	14	24	29	1.94
27005327--27005368	14	2.8	15	76	23	52	45	0	11	42	1.41
27010152--27010185	17	2.0	17	100	0	68	29	17	11	41	1.85
27010727--27010914	103	1.8	103	80	4	227	27	27	12	32	1.92
27016698--27016757	29	2.0	30	83	3	77	40	20	5	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27020322--27020362	14	2.9	14	77	0	55	2	39	2	56	1.26
27027867--27027901	17	2.1	17	88	0	52	17	22	37	22	1.94
27028202--27028338	54	2.5	54	91	0	220	25	15	35	24	1.94
27032621--27032842	82	2.7	82	88	0	327	31	26	18	24	1.97
27043700--27043737	19	2.1	18	90	5	58	34	13	23	28	1.92
27051480--27051509	14	2.2	14	94	5	53	30	23	10	36	1.87
27054889--27054936	20	2.5	19	86	6	69	20	14	39	25	1.91
27056294--27056368	39	1.9	39	91	0	123	32	0	21	46	1.51
27058006--27058045	21	1.9	21	85	10	55	22	0	5	72	1.04
27058281--27058328	23	2.1	23	88	7	71	62	0	6	31	1.20
27059133--27059164	3	10.7	3	100	0	64	68	0	0	31	0.90
27059622--27059653	17	1.9	17	93	6	57	34	9	18	37	1.83
27063447--27063497	12	4.2	12	75	12	50	43	9	13	33	1.77
27065362--27065401	19	2.0	19	85	9	53	52	22	0	25	1.47
27082016--27082059	23	2.0	22	86	4	61	45	15	0	38	1.47
27091624--27091668	18	2.5	18	85	7	56	31	8	26	33	1.87
27123426--27123546	57	2.1	58	80	10	140	44	5	20	28	1.75
27132783--27132837	21	2.6	21	78	18	60	50	1	25	21	1.58
27133658--27133691	11	3.2	10	88	12	50	0	11	2	85	0.71
27133657--27133689	16	2.0	17	88	5	50	0	15	3	81	0.80
27137384--27137440	20	3.0	20	75	14	57	22	3	3	70	1.18
27141156--27141209	21	2.8	18	71	15	54	25	5	0	68	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27141154--27141220	21	3.3	20	68	16	50	23	4	1	70	1.14
27143492--27143543	15	3.5	15	79	10	61	82	5	5	5	0.94
27145736--27145946	45	4.7	44	82	6	228	38	15	20	25	1.92
27145739--27145942	89	2.3	90	83	5	245	38	15	20	25	1.92
27145787--27145991	90	2.3	89	79	9	213	37	15	20	27	1.92
27158687--27159017	23	14.4	23	83	1	423	34	5	14	45	1.67
27159087--27159163	36	2.1	36	82	0	91	29	14	22	33	1.93
27161368--27161453	38	2.3	37	84	11	104	56	4	1	37	1.27
27167467--27167509	18	2.6	16	79	13	50	67	2	2	27	1.15
27167675--27167793	49	2.4	49	88	4	177	38	0	3	57	1.15
27171869--27172005	69	2.0	66	86	11	186	15	21	20	43	1.88
27171835--27171958	23	5.3	23	82	7	135	12	22	20	43	1.86
27178052--27178138	21	4.0	21	72	16	77	14	19	21	43	1.87
27178020--27178140	46	2.6	46	78	10	122	13	22	19	44	1.85
27178052--27178140	23	4.0	23	85	2	110	14	20	21	43	1.87
27178068--27178189	23	5.3	20	74	18	73	12	22	19	45	1.84
27180130--27180218	45	2.0	45	88	4	135	33	28	6	31	1.83
27180308--27180443	30	4.2	30	71	15	92	26	50	2	19	1.62
27180359--27180405	15	3.1	15	76	11	51	23	51	6	19	1.70
27182024--27182097	24	3.1	24	90	1	105	28	20	20	31	1.97
27184679--27184729	23	2.2	24	85	7	77	49	19	3	27	1.66
27184966--27185013	18	2.6	17	75	12	51	29	2	2	66	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27185631--27185690	27	2.3	26	80	8	68	33	0	3	63	1.11
27185987--27186048	2	31.0	2	100	0	124	50	0	0	50	1.00
27186120--27186148	14	2.1	14	93	6	51	68	0	0	31	0.89
27195349--27195387	19	2.1	19	86	13	55	41	2	0	56	1.13
27199001--27199186	42	4.4	42	83	6	207	37	10	23	28	1.88
27202293--27202354	21	2.9	21	73	2	61	48	8	11	32	1.68
27205323--27205358	16	2.2	16	100	0	72	33	0	22	44	1.53
27208061--27208104	14	2.8	16	80	16	56	47	0	0	52	1.00
27210172--27210325	71	2.2	72	88	2	222	35	20	19	24	1.96
27214911--27215065	71	2.2	72	80	9	176	25	19	20	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126