genome.fa.s2.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  100  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31074177--31074221	24	1.9	23	86	4	63	22	0	24	53	1.46
31083072--31083131	9	6.7	9	72	14	52	60	0	1	38	1.07
31083072--31083120	19	2.6	18	78	15	55	59	0	0	40	0.98
31083049--31083143	28	3.5	26	78	12	84	63	1	3	32	1.17
31090921--31091069	23	6.5	23	78	9	135	44	20	22	12	1.84
31090921--31091068	69	2.1	67	84	11	185	45	20	22	12	1.84
31098106--31098254	23	6.5	23	74	9	108	44	20	22	12	1.84
31098106--31098253	69	2.2	66	83	11	174	45	19	22	12	1.84
31105072--31105104	5	6.6	5	100	0	66	57	0	0	42	0.98
31106584--31106623	3	13.0	3	94	5	71	65	2	0	32	1.06
31109803--31110439	159	4.1	159	97	1	1162	41	13	8	36	1.75
31111746--31111796	16	3.2	16	71	15	52	54	7	15	21	1.66
31116362--31116416	23	2.4	23	84	0	65	16	43	21	18	1.88
31120818--31120885	32	2.2	32	86	2	93	42	2	10	44	1.53
31121622--31121659	17	2.3	17	86	4	51	13	23	0	63	1.30
31122156--31122220	31	2.2	29	86	10	87	47	0	1	50	1.10
31122335--31122380	23	2.0	23	84	12	60	50	0	6	43	1.28
31127805--31128046	52	4.7	52	90	0	367	34	21	12	30	1.91
31131555--31131606	27	1.9	27	84	0	68	48	1	3	46	1.31
31154227--31154612	49	7.8	49	65	11	162	39	19	23	17	1.92
31154195--31154631	98	4.4	98	82	2	455	39	19	23	17	1.92
31154179--31154631	197	2.3	196	82	1	521	39	19	23	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31159274--31159343	27	2.5	29	81	9	74	65	0	0	34	0.93
31159379--31159442	13	4.7	13	77	21	60	57	4	0	37	1.19
31163134--31163170	17	2.2	17	100	0	74	24	18	29	27	1.98
31163465--31163623	79	2.0	79	98	0	309	35	12	11	40	1.80
31164139--31164194	12	4.4	12	75	16	51	53	3	1	41	1.29
31165374--31165417	15	2.9	15	79	0	52	68	27	0	4	1.09
31165405--31165435	9	3.4	9	95	0	53	74	12	3	9	1.19
31166959--31166987	13	2.1	14	93	6	51	27	3	0	68	1.05
31167206--31167421	101	2.1	101	83	4	263	33	11	14	39	1.83
31170275--31170330	12	4.5	12	75	18	53	17	3	0	78	0.89
31176771--31176811	15	2.7	15	88	0	64	68	7	12	12	1.39
31177610--31177652	19	2.3	19	84	8	52	58	4	0	37	1.19
31184159--31184248	39	2.2	41	84	7	123	53	6	3	36	1.44
31189267--31189299	6	5.3	6	92	7	57	48	0	0	51	1.00
31189267--31189299	13	2.6	13	95	4	59	48	0	0	51	1.00
31191189--31191217	15	1.9	15	100	0	58	41	6	13	37	1.72
31194881--31195291	51	8.2	51	75	9	333	43	21	23	12	1.86
31194909--31195291	100	3.8	99	76	9	301	43	21	22	12	1.85
31195074--31195247	50	3.5	48	80	6	204	43	20	23	12	1.85
31194909--31195277	150	2.4	150	79	9	435	43	21	22	12	1.86
31195737--31196540	206	3.9	206	83	3	969	36	20	21	21	1.95
31195728--31196517	407	1.9	407	86	1	1118	35	20	21	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31198875--31199105	30	7.8	29	79	5	205	38	26	3	32	1.72
31198914--31199108	59	3.3	57	82	6	203	38	27	1	32	1.66
31198901--31199108	88	2.4	88	87	3	285	37	28	2	31	1.70
31198966--31199181	59	3.6	59	82	6	195	34	27	4	33	1.76
31199028--31199226	58	3.4	59	76	7	190	33	26	4	35	1.77
31202361--31202557	40	4.9	40	89	1	288	36	29	20	13	1.91
31204994--31205089	47	2.0	47	95	0	174	36	20	8	34	1.83
31205328--31205369	19	2.2	19	86	0	57	42	30	4	21	1.73
31207917--31207978	21	3.0	20	73	17	54	40	3	1	54	1.26
31208569--31208662	46	2.1	44	84	13	120	42	1	0	56	1.06
31213146--31213195	15	3.3	15	78	8	57	38	2	4	56	1.30
31215051--31215100	4	13.0	4	87	8	59	70	0	6	24	1.10
31216799--31216840	3	13.7	3	95	5	75	66	0	0	33	0.92
31218976--31219105	28	4.7	27	75	13	97	32	21	15	30	1.94
31218974--31219077	55	1.9	55	82	7	131	31	21	16	30	1.95
31227353--31227406	27	2.0	27	88	0	81	37	16	29	16	1.91
31227512--31227617	54	2.0	54	84	0	140	25	22	16	34	1.95
31230020--31230055	13	2.8	13	91	0	54	61	8	2	27	1.39
31242606--31242661	26	2.1	27	81	12	64	17	21	16	44	1.86
31252859--31253041	30	6.1	29	77	10	147	40	22	3	32	1.72
31252920--31253041	61	2.0	61	88	0	181	41	23	3	31	1.70
31264716--31264820	50	2.1	50	90	0	165	36	17	25	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31264724--31264852	50	2.6	50	83	4	145	34	18	24	22	1.96
31264874--31265128	40	6.4	40	81	6	293	32	25	16	26	1.96
31264874--31265128	80	3.2	79	83	2	323	32	25	16	26	1.96
31265527--31265574	16	3.0	15	79	8	51	72	4	4	18	1.17
31265527--31265568	8	5.2	8	86	8	50	73	2	4	19	1.12
31266735--31266859	30	4.2	30	85	4	146	42	24	3	30	1.70
31267253--31267686	39	10.9	39	79	6	381	28	16	29	25	1.97
31267249--31267680	120	3.6	120	85	4	513	28	17	28	26	1.97
31267252--31267686	159	2.7	157	81	6	464	28	17	28	25	1.97
31267252--31267680	81	5.4	78	77	11	336	28	17	28	25	1.97
31268215--31268487	49	5.6	48	71	12	178	17	30	16	35	1.92
31268215--31268479	99	2.7	99	79	2	300	18	30	16	35	1.92
31269499--31269534	11	3.4	10	88	11	54	0	13	0	86	0.58
31269499--31269540	17	2.4	17	92	4	66	0	16	0	83	0.65
31277542--31277585	16	2.6	17	85	3	54	11	2	13	72	1.21
31278093--31278131	17	2.5	15	84	12	51	23	5	2	69	1.21
31278402--31278440	12	3.1	13	88	7	62	66	0	0	33	0.92
31278403--31278453	12	4.3	12	82	12	61	64	0	0	35	0.94
31280081--31280112	16	2.0	16	93	0	55	59	0	6	34	1.23
31280156--31280205	21	2.4	21	96	0	91	38	12	4	46	1.60
31281026--31281067	17	2.4	18	80	4	50	38	7	0	54	1.28
31281952--31281989	18	2.1	18	85	9	51	65	2	0	31	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31282166--31282210	19	2.3	19	85	11	56	60	2	6	31	1.35
31285951--31285979	2	14.5	2	100	0	58	51	0	0	48	1.00
31286453--31286488	18	2.1	18	89	5	56	41	0	25	33	1.55
31286789--31286827	6	6.5	6	93	0	60	48	0	28	23	1.51
31286930--31287029	38	2.5	40	74	11	107	23	20	27	30	1.98
31286955--31287033	37	2.1	38	83	2	97	22	20	25	31	1.98
31288093--31288259	87	1.9	86	83	6	212	29	14	20	34	1.93
31292401--31292454	20	2.7	20	85	0	72	31	11	27	29	1.91
31293958--31293999	17	2.3	18	80	12	50	16	30	2	50	1.58
31307630--31307663	8	4.2	8	100	0	68	23	0	11	64	1.26
31308124--31308194	28	2.6	26	79	16	72	7	14	1	77	1.04
31308123--31308195	29	2.6	27	79	12	76	6	13	1	78	1.02
31308487--31308525	20	2.1	19	90	9	62	51	7	5	35	1.53
31313781--31313896	37	3.2	37	88	1	171	25	9	28	36	1.87
31314553--31314602	24	2.0	25	92	3	84	32	2	8	58	1.39
31328482--31328527	18	2.6	18	85	0	65	47	4	6	41	1.49
31333845--31333876	14	2.3	14	94	0	55	71	0	28	0	0.86
31333910--31333950	19	2.2	18	86	4	55	80	0	17	2	0.82
31333910--31333954	18	2.5	18	85	7	56	80	0	17	2	0.82
31335054--31335260	112	1.8	112	87	0	306	26	19	15	39	1.91
31335691--31336274	49	11.9	49	70	9	303	33	17	30	17	1.94
31335691--31336274	147	4.0	146	83	2	711	33	17	30	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31335853--31336135	48	5.8	48	71	6	174	33	17	29	18	1.94
31335705--31336274	99	5.8	97	73	7	348	33	18	30	17	1.94
31335691--31336280	294	2.0	295	85	2	801	33	17	30	17	1.94
31335800--31336287	99	5.0	99	74	7	375	34	17	30	18	1.93
31336572--31337084	38	13.5	37	78	9	382	33	24	15	25	1.95
31336609--31337158	76	7.2	75	78	9	422	34	24	16	25	1.95
31336572--31337156	116	5.1	115	81	6	584	34	24	15	24	1.95
31336651--31337102	149	3.0	149	80	7	389	34	23	16	25	1.95
31342559--31342583	13	1.9	13	100	0	50	68	0	0	32	0.90
31356402--31356426	13	1.9	13	100	0	50	32	4	16	48	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135