genome.fa.s2.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  48  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12577706--12577778	25	3.1	25	72	22	66	52	0	0	47	1.00
12577710--12577784	20	3.9	21	70	24	58	50	0	0	49	1.00
12578537--12578638	30	3.4	29	81	6	125	50	0	0	48	1.07
12578537--12578638	29	3.5	27	75	14	96	50	0	0	48	1.07
12591464--12591529	23	2.9	23	71	13	64	19	0	18	62	1.34
12592833--12592955	24	5.1	24	87	0	165	26	21	24	27	1.99
12592965--12593120	82	1.9	82	86	2	224	31	25	20	22	1.98
12601220--12601253	17	2.0	17	100	0	68	47	17	5	29	1.71
12605478--12605531	21	2.6	21	82	5	74	29	24	16	29	1.97
12614627--12614698	6	12.0	6	69	16	51	45	2	4	47	1.36
12614674--12614717	18	2.5	17	82	7	52	56	2	4	36	1.32
12620364--12620396	17	1.9	17	93	0	57	48	0	3	48	1.17
12631353--12631394	18	2.4	18	88	4	59	59	11	11	16	1.61
12631504--12631542	20	1.9	21	84	5	53	2	20	2	74	1.06
12649033--12649062	15	2.0	15	93	0	51	33	23	0	43	1.54
12649074--12649099	13	2.0	13	100	0	52	30	15	7	46	1.74
12650530--12650575	24	1.9	24	86	0	65	60	15	8	15	1.57
12653201--12653447	30	8.3	29	75	8	140	34	7	24	34	1.84
12653200--12653447	60	4.2	59	75	7	155	33	8	24	33	1.85
12655257--12655344	46	1.9	46	83	4	115	28	15	26	29	1.96
12655400--12656291	123	7.3	123	86	1	1162	22	20	16	40	1.91
12655958--12656049	48	1.9	48	91	4	150	22	23	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12656080--12656171	48	1.9	48	88	0	139	21	22	16	39	1.92
12656361--12656452	48	1.9	48	86	0	130	20	21	18	39	1.93
12656144--12656450	159	1.9	159	83	3	395	23	20	16	39	1.92
12656303--12656551	123	2.0	124	89	0	383	22	20	18	38	1.94
12656781--12657062	49	5.8	49	74	10	157	20	28	15	35	1.93
12656782--12657052	146	1.9	146	79	1	310	21	28	15	34	1.94
12657901--12657938	20	2.0	20	84	5	51	2	23	0	73	0.95
12657914--12658008	10	8.5	11	73	20	65	0	23	0	76	0.78
12657914--12658009	11	8.6	11	76	19	76	0	22	0	77	0.78
12657908--12657984	6	12.8	6	73	19	63	0	22	0	77	0.76
12657908--12657983	17	4.3	17	80	11	64	0	22	0	77	0.77
12658941--12658997	6	9.7	6	78	16	57	0	19	0	80	0.71
12658948--12658988	4	10.8	4	80	19	52	0	19	0	80	0.71
12658952--12658999	7	6.4	7	86	13	69	0	18	0	81	0.70
12658942--12658996	23	2.4	23	82	14	69	0	20	0	80	0.72
12658941--12658999	30	1.9	31	93	3	102	0	18	0	81	0.69
12658941--12658998	24	2.4	23	88	11	82	0	18	0	81	0.70
12661883--12662117	30	7.9	29	76	11	111	34	6	21	36	1.80
12661876--12662126	60	4.2	60	78	8	228	35	7	20	36	1.80
12661942--12662105	89	1.8	90	86	1	240	34	6	20	38	1.78
12665566--12665656	27	3.4	27	83	3	103	47	14	16	21	1.82
12665619--12665692	27	2.7	27	76	0	76	40	13	24	21	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12666825--12666905	40	2.0	40	100	0	162	22	19	12	45	1.83
12672071--12672110	21	1.9	21	89	0	62	45	5	27	22	1.73
12683356--12683432	24	3.2	24	67	26	72	40	1	1	57	1.15
12683359--12683434	18	4.6	16	70	20	59	38	1	1	59	1.14
12683337--12683439	48	2.1	48	98	0	197	40	1	1	55	1.22
12692029--12692084	28	2.0	27	83	10	69	44	1	0	53	1.11
12692089--12692118	15	2.0	15	93	0	51	63	0	0	36	0.95
12692156--12692189	15	2.3	15	94	0	59	58	0	0	41	0.98
12703211--12703248	17	2.2	18	85	4	51	18	15	15	50	1.79
12703823--12703869	17	2.7	17	83	9	51	80	2	17	0	0.80
12706368--12706392	5	5.0	5	100	0	50	20	0	40	40	1.52
12708202--12708243	21	2.0	22	85	4	59	9	21	4	64	1.42
12711143--12711168	4	6.5	4	100	0	52	76	23	0	0	0.78
12713293--12713378	43	2.0	43	97	0	163	24	27	13	33	1.94
12719766--12719807	21	2.0	22	85	4	59	9	21	4	64	1.42
12725943--12725981	15	2.7	14	84	7	51	12	5	7	74	1.20
12728701--12728731	15	2.1	15	100	0	62	80	0	19	0	0.71
12730708--12730745	20	2.1	19	85	14	53	31	5	18	44	1.72
12748842--12748875	15	2.3	15	89	0	50	8	8	5	76	1.15
12748835--12748889	21	2.6	21	80	8	58	16	9	5	69	1.34
12750735--12750775	3	13.7	3	80	19	50	65	0	29	4	1.13
12792996--12793030	18	1.9	18	88	11	54	40	28	8	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12793570--12793609	18	2.2	18	86	4	53	75	5	5	15	1.15
12794415--12794579	30	5.5	30	74	13	133	35	19	4	40	1.73
12794426--12794572	60	2.5	60	81	7	174	35	21	3	39	1.70
12808324--12808356	17	1.9	17	100	0	66	18	12	12	57	1.64
12812516--12812542	14	1.9	14	100	0	54	14	7	3	74	1.18
12820049--12820090	15	2.7	15	85	3	57	71	0	28	0	0.86
12820064--12820099	18	2.0	18	89	10	56	72	0	25	2	0.98
12833602--12833648	15	3.4	14	82	5	60	2	17	0	80	0.80
12833596--12833632	18	2.0	19	89	5	58	5	16	0	78	0.93
12840290--12840327	18	2.1	18	90	0	58	34	15	18	31	1.92
12841706--12842414	353	2.0	353	91	1	1134	26	19	17	36	1.93
12847098--12847134	12	3.2	12	78	21	51	54	0	2	43	1.14
12847564--12848043	252	1.9	252	92	0	800	33	13	18	34	1.90
12848527--12848552	6	4.3	6	100	0	52	15	34	0	50	1.45
12848842--12848873	6	5.3	6	100	0	64	50	0	34	15	1.45
12862093--12862171	23	3.5	22	85	3	95	36	26	21	15	1.93
12870956--12870998	20	2.2	20	83	8	52	32	18	2	46	1.62
12873685--12873770	44	2.0	44	88	0	127	34	26	2	36	1.70
12873766--12873825	30	2.0	31	90	3	95	21	36	0	41	1.54
12875262--12875315	20	2.7	19	73	18	56	74	5	0	20	1.02
12875260--12875313	25	2.1	25	83	10	65	75	5	0	18	0.98
12875333--12875375	16	2.8	16	85	3	61	76	6	0	16	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12875224--12875412	101	1.8	104	83	10	255	66	5	5	21	1.35
12876289--12876792	45	11.2	45	80	6	500	27	16	25	30	1.97
12876289--12876792	135	3.7	133	83	4	555	27	16	25	30	1.97
12876883--12877163	49	5.8	49	72	6	176	19	16	18	45	1.86
12876885--12877163	98	2.9	97	79	2	263	19	16	17	45	1.85
12878427--12878457	11	2.8	11	95	0	53	0	3	6	90	0.55
12884015--12884063	19	2.8	17	82	14	64	61	12	12	14	1.58
12899668--12899717	13	3.6	13	83	8	55	74	6	4	16	1.17
12903332--12903367	15	2.5	14	86	8	54	80	2	8	8	0.99
12903516--12903661	29	5.0	28	78	14	134	39	4	23	32	1.76
12903616--12903673	30	1.9	30	89	0	89	43	1	17	37	1.59
12905012--12905065	21	2.5	22	78	3	65	16	20	42	20	1.89
12905636--12906210	49	11.7	49	72	7	297	20	25	17	36	1.94
12905636--12906214	98	5.9	98	79	4	524	20	26	17	36	1.94
12905659--12906214	196	2.8	195	80	4	582	19	26	16	36	1.93
12914126--12914173	24	2.0	24	84	8	62	10	22	20	45	1.81
12918355--12918665	120	2.6	118	81	4	365	36	3	22	37	1.72
12918355--12918662	30	10.3	30	73	15	230	36	3	22	37	1.71
12921143--12921230	28	3.1	28	81	0	113	31	17	27	23	1.97
12923274--12923386	56	2.0	56	100	0	226	35	14	20	30	1.92
12927270--12927315	23	2.0	23	100	0	92	26	8	17	47	1.76
12929678--12929738	29	2.0	30	84	6	79	62	6	4	26	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12930123--12930156	13	2.5	14	85	4	52	76	5	0	17	0.98
12930438--12930496	26	2.4	25	83	8	68	44	10	6	38	1.65
12932495--12932931	49	8.9	49	81	3	371	21	17	17	43	1.88
12932474--12932905	144	2.9	144	82	5	463	22	17	16	43	1.88
12932466--12932987	98	5.3	97	79	4	415	21	18	16	43	1.88
12932467--12932979	49	10.5	49	79	5	351	21	17	16	43	1.88
12932470--12932979	144	3.5	144	79	6	364	21	18	16	43	1.88
12937967--12938016	26	2.0	26	84	11	68	22	0	8	70	1.13
12958513--12958754	43	5.8	43	81	7	216	22	26	10	40	1.86
12965243--12965347	41	2.6	42	79	10	103	22	23	9	43	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135