genome.fa.s2.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  69  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20766059--20766107	20	2.4	20	89	3	71	38	24	20	16	1.92
20766068--20766111	14	3.2	14	84	9	56	40	27	15	15	1.88
20766165--20766198	15	2.3	15	89	0	50	11	8	29	50	1.69
20768512--20768793	110	2.6	109	85	3	350	24	18	20	36	1.95
20768919--20768950	2	16.0	2	100	0	64	50	0	0	50	1.00
20772673--20772940	143	1.9	143	93	0	464	32	16	12	38	1.86
20780233--20780274	20	2.1	20	100	0	84	54	9	0	35	1.33
20780717--20780858	69	2.1	69	93	0	239	41	7	6	44	1.58
20785243--20785393	77	2.0	77	95	0	275	43	14	11	31	1.81
20790235--20790306	30	2.4	31	88	6	103	47	19	13	19	1.83
20791099--20791167	30	2.3	31	85	7	88	18	14	17	49	1.80
20797581--20797644	24	2.7	24	90	0	92	26	9	7	56	1.58
20806580--20806665	44	2.0	43	90	2	136	30	11	22	36	1.89
20808098--20808229	22	6.0	22	76	0	111	40	21	24	13	1.89
20811375--20811423	25	1.9	25	84	12	64	59	4	4	32	1.35
20817827--20817895	20	3.3	20	83	4	75	46	11	7	34	1.68
20818427--20818464	14	2.7	14	91	0	58	47	18	5	28	1.70
20819820--20819874	28	2.0	28	96	0	101	49	14	16	20	1.80
20820074--20820234	43	3.8	43	77	4	166	35	18	11	34	1.87
20826535--20826578	21	2.1	21	95	0	79	47	22	6	22	1.75
20827522--20827582	12	5.1	12	71	15	54	60	0	39	0	0.97
20837616--20838252	77	8.3	78	73	11	367	35	20	16	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20837601--20838173	115	5.0	115	80	4	541	34	20	16	28	1.94
20837638--20838286	115	5.6	115	79	5	467	35	20	16	28	1.94
20837624--20838232	38	15.9	38	76	8	441	35	20	15	28	1.93
20838492--20838525	17	2.1	17	88	5	52	61	23	0	14	1.33
20842644--20842714	21	3.4	21	88	5	99	36	19	19	23	1.95
20844516--20844576	27	2.4	25	83	8	70	40	9	9	39	1.72
20845196--20845974	45	17.1	45	83	3	835	25	15	27	31	1.96
20845217--20845974	137	5.6	135	79	7	771	25	15	27	31	1.95
20848073--20848127	23	2.3	23	84	12	67	52	9	12	25	1.68
20850314--20850352	18	2.1	19	85	4	53	66	10	7	15	1.43
20857078--20857133	10	5.8	10	83	12	64	23	0	3	73	0.99
20857066--20857135	35	2.0	35	88	5	106	21	0	4	74	0.99
20857075--20857133	17	3.4	16	75	22	57	22	0	3	74	0.96
20857063--20857133	10	7.9	9	75	19	60	21	0	2	76	0.92
20859270--20859314	9	5.0	9	80	0	54	2	17	0	80	0.82
20871622--20871666	20	2.3	21	85	11	60	51	15	4	28	1.63
20872782--20872855	11	7.6	10	73	19	59	70	5	2	21	1.20
20872755--20872853	50	2.0	50	81	15	116	69	5	2	23	1.18
20872974--20873031	19	2.9	19	71	5	53	68	6	3	20	1.27
20872972--20873014	15	2.9	15	83	10	52	74	6	2	16	1.14
20873242--20873302	27	2.4	25	84	10	72	36	11	11	40	1.77
20874796--20874896	52	1.9	52	85	0	139	52	7	1	37	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20875049--20875087	14	2.8	14	84	0	51	58	7	10	23	1.56
20879333--20879490	69	2.3	69	98	0	307	24	32	20	22	1.97
20879405--20879807	159	2.5	158	85	2	542	22	26	23	27	1.99
20879765--20879833	26	2.7	26	86	4	95	24	28	21	24	1.99
20880092--20880159	13	5.4	13	76	10	61	44	0	19	36	1.51
20880159--20880184	2	13.0	2	100	0	52	50	0	0	50	1.00
20882876--20882918	14	3.0	15	80	10	54	79	0	18	2	0.85
20882888--20882921	18	1.9	17	94	5	59	79	0	20	0	0.73
20889079--20889168	47	1.9	47	93	0	153	43	7	25	23	1.80
20889028--20889193	47	3.8	42	76	13	149	38	9	27	25	1.86
20889877--20889952	21	3.6	21	73	8	66	31	14	22	31	1.94
20890449--20890499	14	3.4	14	71	23	50	54	7	1	35	1.40
20896460--20896597	58	2.4	58	85	4	181	45	0	2	50	1.21
20896763--20896808	16	2.9	16	83	0	65	26	17	6	50	1.70
20901305--20901360	26	2.1	27	87	9	80	50	1	3	44	1.29
20901305--20901371	26	2.6	25	81	9	71	46	1	2	49	1.26
20908737--20908768	17	1.9	16	93	6	55	40	9	0	50	1.35
20908852--20908881	15	2.0	15	93	0	51	76	0	0	23	0.78
20911270--20911298	13	2.2	13	100	0	58	72	6	20	0	1.07
20917135--20917192	6	9.8	6	80	12	59	79	0	20	0	0.74
20917124--20917192	16	4.4	17	80	15	85	78	0	21	0	0.76
20917144--20917189	22	2.1	22	88	8	67	78	0	21	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20917479--20917525	22	2.2	21	84	3	58	29	14	0	55	1.40
20918177--20918853	81	8.3	81	86	2	883	32	28	15	24	1.95
20918177--20918805	323	1.9	323	87	0	927	32	28	15	24	1.95
20918735--20918961	46	5.1	45	80	10	243	34	27	14	22	1.93
20920605--20920643	16	2.4	16	87	8	53	53	35	0	10	1.35
20920730--20920774	21	2.1	21	95	0	81	17	15	26	40	1.90
20930857--20930908	14	3.6	14	76	18	54	44	0	1	53	1.11
20930860--20930904	16	2.9	16	84	15	60	44	0	2	53	1.13
20947205--20947250	20	2.2	20	84	3	56	50	15	6	28	1.69
20951722--20951765	12	3.7	12	78	0	52	52	34	0	13	1.41
20951725--20951769	20	2.2	20	88	0	63	53	33	0	13	1.40
20952470--20952527	18	3.4	16	77	15	55	65	1	1	31	1.13
20955611--20955637	12	2.2	12	100	0	54	33	7	0	59	1.25
20970871--20970965	21	4.6	21	70	19	83	16	16	9	56	1.65
20977464--20977508	18	2.5	18	85	0	54	28	20	20	31	1.97
20984259--20984305	18	2.6	18	86	0	67	21	31	4	42	1.72
20985837--20985884	21	2.3	21	81	0	60	27	27	14	31	1.95
20990564--20990855	52	5.7	52	90	1	408	34	23	15	26	1.94
20990564--20990855	102	2.8	103	89	3	426	34	23	15	26	1.94
20990564--20990855	154	1.9	155	87	2	435	34	23	15	26	1.94
20994392--20994440	20	2.5	20	100	0	98	34	22	32	10	1.88
20996991--20997031	17	2.4	17	80	19	50	53	17	14	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20997443--20997483	18	2.3	18	86	0	55	0	29	4	65	1.13
21002673--21002709	19	2.0	18	89	5	56	72	5	13	8	1.24
21002673--21002709	18	2.0	19	85	15	51	72	5	13	8	1.24
21017690--21017735	18	2.5	19	89	6	69	15	34	0	50	1.44
21019194--21019252	27	2.2	27	87	6	84	71	13	0	15	1.15
21023329--21023356	14	2.0	14	100	0	56	71	0	0	28	0.86
21025524--21025579	26	2.2	26	93	0	94	44	12	10	32	1.77
21025934--21025977	22	2.0	22	90	0	70	18	6	11	63	1.48
21032471--21032503	17	1.9	17	100	0	66	63	0	18	18	1.31
21038847--21038901	14	4.1	14	79	11	62	25	18	21	34	1.96
21042071--21042133	24	2.4	25	77	17	58	23	20	11	44	1.83
21058057--21058107	20	2.5	20	78	18	52	41	11	0	47	1.40
21064192--21064241	20	2.5	19	81	15	57	42	12	0	46	1.41
21066573--21066618	18	2.6	18	83	10	51	78	2	13	6	1.04
21068347--21078582	214	47.4	212	79	7	9496	40	14	16	27	1.88
21068347--21108116	429	92.9	430	73	11	21799	40	14	17	27	1.88
21068347--21070305	213	9.1	214	84	3	2402	42	13	16	27	1.86
21078583--21079820	214	5.8	212	82	4	1330	40	15	17	26	1.89
21079659--21080007	186	1.9	184	80	4	416	41	15	15	27	1.87
21080912--21081255	186	1.9	184	80	4	415	42	15	14	27	1.86
21081089--21082341	214	5.9	211	81	4	1275	40	15	17	27	1.89
21082353--21083554	214	5.6	212	84	2	1391	40	14	17	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21086604--21086941	187	1.8	185	85	1	478	39	16	17	26	1.91
21086768--21089058	214	10.8	215	80	5	2372	40	14	17	27	1.89
21087225--21104915	214	83.0	207	70	15	2923	40	14	16	27	1.88
21088887--21089243	185	1.9	183	84	2	473	41	15	18	24	1.89
21089059--21096300	214	33.7	216	79	6	6885	40	14	16	27	1.88
21090610--21090691	41	2.0	41	97	0	155	40	15	12	31	1.85
21090651--21096300	215	26.5	215	80	6	5612	40	14	16	27	1.88
21097018--21105030	212	37.6	216	77	9	6918	40	14	16	28	1.89
21098544--21098624	40	2.0	41	92	7	139	38	16	12	33	1.85
21105041--21108121	215	14.4	215	82	5	3584	39	14	17	28	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135