genome.fa.s2.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  103  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31821322--31821400	29	2.7	28	82	9	79	35	30	0	34	1.58
31821380--31821592	29	7.3	29	67	15	116	35	25	7	31	1.84
31821353--31821691	59	5.8	59	80	9	340	34	24	5	35	1.80
31821499--31821634	29	4.7	30	68	21	92	31	25	8	35	1.85
31821615--31821717	27	3.7	29	73	19	94	37	23	2	35	1.70
31826296--31826323	14	2.0	14	100	0	56	50	14	0	35	1.43
31834618--31834848	79	2.9	79	84	3	311	44	9	13	33	1.75
31842829--31842866	3	13.0	3	83	5	51	73	0	26	0	0.83
31842829--31842862	11	3.0	11	91	4	50	73	0	26	0	0.83
31842833--31842868	17	2.1	17	89	0	54	77	0	22	0	0.76
31850359--31850504	41	3.5	42	81	7	140	34	13	25	26	1.92
31850439--31850518	40	2.1	39	88	4	117	32	10	26	31	1.89
31850447--31850531	40	2.1	40	84	4	109	35	11	28	24	1.91
31852949--31853002	16	3.2	16	77	15	56	55	3	0	40	1.17
31853708--31853742	2	17.5	2	100	0	70	48	0	0	51	1.00
31854791--31855015	30	7.6	29	81	9	188	39	2	24	34	1.68
31854915--31855045	60	2.2	60	83	4	156	37	3	24	35	1.71
31856030--31856063	11	2.9	12	86	8	52	38	0	0	61	0.96
31856087--31856163	40	1.9	40	82	10	95	61	2	1	35	1.18
31857039--31857278	51	4.6	52	82	3	252	32	16	22	28	1.96
31857047--31857278	103	2.2	102	82	3	259	32	15	22	28	1.95
31865400--31865585	51	3.6	51	86	0	255	34	15	22	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31866720--31866956	122	1.9	122	91	0	384	18	20	18	41	1.90
31867375--31867670	50	6.0	50	75	5	233	17	29	17	35	1.93
31867386--31867646	98	2.6	98	80	7	278	16	28	19	35	1.94
31868457--31868492	16	2.2	17	90	5	56	0	16	0	83	0.65
31868454--31868509	18	3.1	17	85	10	67	5	12	0	82	0.83
31868454--31868492	9	4.2	9	87	6	60	0	15	0	84	0.62
31874016--31874224	89	2.3	90	85	2	278	36	1	24	37	1.65
31874016--31874192	30	5.9	29	87	5	246	36	0	24	37	1.60
31874016--31874224	60	3.5	58	83	5	238	36	1	24	37	1.65
31875294--31875336	2	21.5	2	100	0	86	51	0	0	48	1.00
31876552--31876594	21	2.1	20	91	4	68	55	0	4	39	1.20
31878326--31878368	18	2.3	20	80	15	56	53	0	2	44	1.13
31878733--31878766	17	2.1	17	88	5	52	38	0	8	52	1.33
31880211--31880248	2	19.0	2	100	0	76	50	0	0	50	1.00
31880356--31880389	18	2.0	16	88	11	50	76	5	0	17	0.98
31881852--31881884	2	17.0	2	93	6	59	51	0	0	48	1.00
31883052--31883390	49	6.9	48	71	8	209	19	27	17	36	1.94
31883069--31883322	98	2.6	97	87	2	346	19	27	16	37	1.93
31883069--31883390	98	3.3	98	83	7	307	19	27	16	36	1.94
31884401--31884442	12	3.4	12	93	6	75	0	9	0	90	0.45
31884401--31884442	13	3.3	13	90	3	68	0	9	0	90	0.45
31888069--31888107	3	13.3	3	94	5	71	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31889167--31889215	20	2.5	20	82	0	71	40	24	18	16	1.90
31895825--31895851	5	5.4	5	100	0	54	40	0	0	59	0.98
31899740--31899795	26	2.1	27	83	6	69	41	26	0	32	1.56
31900808--31900842	13	2.7	13	100	0	70	11	8	45	34	1.71
31913365--31913396	15	2.1	15	100	0	64	25	43	18	12	1.85
31915582--31915894	59	5.3	59	89	2	443	32	3	31	32	1.74
31915582--31915894	117	2.7	118	89	2	461	32	3	31	32	1.74
31918154--31918542	201	1.9	201	90	2	620	20	21	21	37	1.95
31930667--31930754	28	3.0	29	74	11	90	31	4	32	30	1.78
31930672--31931151	59	8.3	59	88	5	633	32	1	30	35	1.69
31930667--31931150	116	4.2	117	87	3	674	32	2	30	34	1.70
31935112--31935158	12	4.0	12	83	5	69	17	17	19	46	1.84
31935111--31935157	23	2.0	23	91	4	76	19	17	19	44	1.87
31935254--31935304	24	2.2	23	82	3	57	29	13	19	37	1.90
31935261--31935335	23	3.2	23	79	5	80	30	9	18	41	1.82
31935860--31935992	70	1.9	67	83	4	167	33	12	11	42	1.79
31936026--31936084	31	1.9	31	85	0	82	35	15	11	37	1.84
31937604--31937673	23	3.1	23	84	15	94	37	7	14	41	1.73
31939338--31939376	20	2.0	20	94	0	69	28	10	23	38	1.87
31942755--31942802	19	2.5	19	70	12	53	41	0	2	56	1.11
31942724--31942802	39	2.1	38	81	11	90	39	0	2	58	1.12
31942835--31942912	27	2.8	26	72	11	75	29	1	7	61	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31948232--31948309	39	2.0	39	100	0	156	23	23	17	35	1.95
31950191--31950225	17	2.1	17	100	0	70	40	11	11	37	1.77
31952030--31952071	22	1.9	22	85	0	57	38	2	14	45	1.58
31952670--31952705	18	2.0	18	88	0	54	33	11	5	50	1.61
31953256--31953438	98	1.9	97	87	5	271	40	12	18	28	1.86
31953601--31953640	22	1.9	21	85	10	55	45	7	20	27	1.78
31953827--31953924	28	3.4	28	78	4	88	38	3	23	34	1.70
31953922--31954024	29	3.5	30	80	4	111	38	4	19	36	1.73
31955573--31955639	25	2.6	27	79	13	77	23	10	22	43	1.84
31955573--31955654	26	3.2	25	78	16	78	24	10	25	39	1.88
31956098--31956139	11	3.7	11	87	6	57	54	2	2	40	1.26
31956114--31956158	17	2.6	18	85	3	65	53	0	4	42	1.21
31956093--31956184	6	15.5	6	71	10	64	50	4	2	43	1.34
31956093--31956144	23	2.2	23	89	3	77	48	3	1	46	1.31
31956093--31956152	23	2.6	23	84	7	59	51	3	3	41	1.35
31956139--31956184	23	2.0	23	83	12	58	50	4	2	43	1.34
31956434--31956899	92	5.1	92	94	0	774	32	16	16	34	1.91
31956682--31956901	40	4.7	50	66	26	151	33	15	15	35	1.89
31959162--31959191	8	3.6	8	91	8	51	10	0	10	80	0.92
31959162--31959236	9	8.6	9	83	12	68	6	4	5	84	0.88
31959162--31959236	17	4.3	17	83	6	69	6	4	5	84	0.88
31959186--31959238	1	53.0	1	78	0	52	3	5	1	88	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31964586--31964625	22	1.9	21	85	10	55	45	7	20	27	1.78
31964620--31964681	28	2.2	28	79	0	70	30	11	27	30	1.91
31964665--31964737	28	2.5	30	76	17	73	43	1	17	36	1.58
31964719--31964910	28	6.7	29	69	14	103	33	6	27	32	1.82
31964809--31965032	30	8.0	29	73	17	136	37	2	23	36	1.69
31964809--31965032	29	8.0	29	73	20	147	37	2	23	36	1.69
31964783--31965020	58	4.3	56	72	15	181	37	3	23	36	1.71
31964840--31964988	78	1.9	78	83	8	196	39	2	21	36	1.68
31964918--31965032	59	2.0	58	84	5	151	36	1	22	39	1.65
31966213--31966242	16	1.9	16	93	6	53	43	0	3	53	1.17
31966558--31966639	26	3.2	26	74	10	78	25	9	24	40	1.86
31967052--31967182	6	22.3	6	69	7	72	48	3	3	45	1.33
31967055--31967121	35	1.9	35	84	6	91	50	2	1	44	1.26
31967073--31967182	41	2.6	41	81	2	121	50	3	3	42	1.37
31967112--31967156	17	2.6	18	85	3	65	51	0	6	42	1.28
31968202--31968245	20	2.3	18	82	17	54	68	6	6	18	1.35
31972139--31972328	53	3.6	53	87	0	263	29	16	22	31	1.96
31972913--31972960	24	2.0	25	91	4	80	22	8	29	39	1.83
31973010--31973065	21	2.6	22	76	18	64	30	7	26	35	1.83
31976451--31976644	61	3.2	60	83	4	246	23	17	11	46	1.81
31976685--31976731	23	2.0	23	100	0	94	17	0	23	59	1.37
31976871--31976939	31	2.2	31	84	2	84	46	8	17	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31978453--31978537	31	2.7	31	88	0	116	41	12	11	34	1.80
31982292--31982359	26	2.6	27	79	13	88	61	1	2	33	1.20
31982287--31982359	25	2.9	25	75	19	71	63	1	2	32	1.17
31982442--31982470	5	5.8	5	100	0	58	0	41	17	41	1.49
31984174--31984211	3	12.7	3	100	0	76	34	31	0	34	1.58
31984210--31984246	3	12.3	3	100	0	74	35	0	0	64	0.94
31984876--31984920	23	2.0	23	83	8	58	55	0	4	40	1.20
31984785--31985172	151	2.6	152	89	3	615	42	2	10	45	1.52
31986219--31986697	241	2.0	240	88	3	703	36	6	15	41	1.74
31989939--31989988	8	6.2	8	85	0	55	24	26	0	50	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135