genome.fa.s2.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  113  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33861913--33861956	21	2.1	21	95	0	79	40	9	29	20	1.83
33865477--33865560	30	2.8	30	85	0	105	16	7	54	21	1.65
33865506--33865556	15	3.4	15	71	10	50	17	5	54	21	1.63
33882266--33882863	58	10.3	57	76	11	438	36	2	28	31	1.70
33882380--33882714	29	11.5	29	66	23	109	37	3	29	30	1.73
33882296--33882751	58	7.8	59	82	7	470	36	2	29	31	1.72
33882267--33882751	117	4.2	117	83	7	544	37	2	28	31	1.71
33882652--33882863	28	7.5	27	72	17	121	35	1	29	33	1.69
33882659--33882863	29	7.2	28	72	15	95	34	1	29	33	1.69
33882787--33882877	29	3.1	30	84	7	107	36	0	28	35	1.58
33884478--33884521	17	2.6	18	82	10	56	56	4	2	36	1.32
33884869--33885258	76	5.1	76	90	4	613	32	16	15	35	1.91
33884947--33885597	167	3.9	167	90	7	905	31	17	15	36	1.91
33885267--33885425	76	2.1	77	93	2	275	30	17	15	35	1.91
33885177--33885598	91	5.0	85	83	12	512	30	17	15	36	1.91
33885442--33885580	40	3.3	40	75	21	151	32	17	12	37	1.88
33884827--33885597	398	1.9	387	89	7	1114	31	16	16	35	1.91
33888001--33888038	12	3.2	12	89	10	60	2	0	13	84	0.73
33888007--33888040	16	2.1	17	94	5	61	5	0	14	79	0.91
33892581--33893036	59	7.8	59	83	8	481	36	2	28	31	1.72
33892654--33893164	29	17.6	29	67	22	215	36	2	28	32	1.70
33892581--33893150	118	4.9	116	81	8	549	36	2	28	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33892580--33893155	59	9.9	59	80	8	470	36	2	28	32	1.71
33894762--33894817	11	4.9	11	76	10	51	55	3	1	39	1.28
33894764--33894800	17	2.2	17	95	0	65	54	5	2	37	1.38
33894793--33894836	17	2.6	18	82	10	56	56	4	2	36	1.32
33903168--33903506	59	5.8	59	82	6	404	33	2	30	33	1.71
33903144--33903528	117	3.3	117	82	5	460	33	2	30	32	1.71
33903465--33903565	30	3.4	30	81	5	91	31	3	25	38	1.74
33904379--33904413	16	2.1	17	94	5	63	42	17	22	17	1.88
33905340--33905381	13	3.2	13	100	0	84	28	7	23	40	1.81
33905395--33905478	17	5.0	17	84	8	100	51	1	2	45	1.22
33905406--33905478	11	6.5	11	76	16	62	53	1	2	42	1.23
33905406--33905478	6	13.0	6	74	18	68	53	1	2	42	1.23
33905799--33906002	38	5.4	38	65	13	132	31	17	15	35	1.91
33905750--33906525	76	10.0	76	78	10	529	32	16	16	34	1.92
33905753--33906533	152	5.0	152	87	5	1159	31	16	16	34	1.92
33905986--33906153	91	1.9	90	87	3	248	29	16	18	35	1.93
33906075--33906533	76	6.0	76	92	1	740	32	16	16	34	1.92
33918913--33919356	30	15.1	30	68	16	168	33	2	27	35	1.71
33918839--33919296	117	3.9	115	79	7	442	34	2	29	33	1.72
33918851--33919296	59	7.6	59	80	7	410	34	2	28	34	1.72
33918955--33919120	29	5.7	30	69	18	86	34	3	29	33	1.73
33918851--33919296	176	2.5	173	86	5	592	34	2	28	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33919255--33919348	29	3.2	31	80	10	99	36	2	24	37	1.68
33920046--33920080	16	2.1	17	89	5	54	42	14	22	20	1.88
33921001--33921029	13	2.2	13	100	0	58	27	6	24	41	1.80
33921065--33921139	6	12.8	6	70	20	52	54	1	5	38	1.31
33921081--33921107	14	1.9	14	100	0	54	51	0	11	37	1.37
33921098--33921139	16	2.5	17	92	3	68	59	0	2	38	1.10
33921066--33921123	31	1.9	31	89	3	91	55	1	5	37	1.33
33921422--33921447	11	2.4	11	100	0	52	38	15	0	46	1.46
33923742--33923779	18	2.1	18	90	0	58	21	44	0	34	1.52
33926256--33926337	10	8.2	10	73	10	53	52	2	1	43	1.22
33930130--33930170	15	2.5	17	80	11	59	65	0	0	34	0.93
33930130--33930197	22	2.9	24	76	10	68	58	2	1	36	1.22
33934450--33934489	16	2.5	16	91	0	62	50	7	5	37	1.53
33949167--33949202	13	2.6	15	87	12	51	50	13	5	30	1.65
33954414--33954439	6	4.3	6	100	0	52	34	0	65	0	0.93
33962487--33962576	17	5.3	16	82	16	76	44	1	0	54	1.07
33962484--33962559	11	6.8	11	83	8	100	44	1	0	53	1.08
33962487--33962558	6	12.7	6	79	16	82	43	1	0	55	1.08
33963272--33963310	13	3.1	13	85	3	53	48	0	2	48	1.15
33963278--33963328	19	2.6	19	78	3	57	49	1	3	45	1.32
33964083--33964424	162	2.1	162	90	0	522	26	16	13	42	1.86
33964541--33964863	29	11.0	29	69	19	154	32	29	3	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33964555--33964870	59	5.4	59	90	2	469	31	29	3	34	1.76
33964555--33964905	119	3.0	116	87	5	481	31	29	4	34	1.78
33968239--33968287	19	2.5	20	90	6	75	55	4	2	38	1.31
33972209--33972266	6	10.2	6	72	10	50	39	1	0	58	1.08
33972201--33972269	17	4.1	17	83	3	86	39	1	0	59	1.06
33973013--33973094	32	2.7	30	77	9	78	45	4	2	47	1.37
33973082--33973106	12	2.1	12	100	0	50	48	0	0	52	1.00
33974121--33974229	30	3.7	29	87	2	146	37	19	2	40	1.66
33974117--33974258	60	2.4	61	77	5	155	35	22	3	38	1.71
33974205--33974370	60	2.8	58	81	9	178	30	27	6	36	1.81
33974205--33974375	29	5.9	27	72	13	110	29	29	6	35	1.82
33975854--33975890	10	3.9	10	86	10	51	43	0	0	56	0.99
33978574--33978632	21	2.7	21	79	12	57	67	3	0	28	1.06
33983145--33983199	26	2.1	26	100	0	110	38	29	10	21	1.88
33985335--33985378	22	2.2	19	84	15	61	47	0	0	52	1.00
33985336--33985378	20	2.0	22	91	8	72	46	0	0	53	1.00
33985340--33985412	29	2.4	31	93	4	123	52	0	1	46	1.09
33985340--33985419	30	2.7	29	83	9	99	50	0	1	48	1.08
33985430--33985464	15	2.3	15	95	0	61	11	31	0	57	1.34
33985437--33985462	12	2.2	12	100	0	52	7	34	0	57	1.27
33997435--33997516	24	3.7	23	79	14	82	45	1	0	53	1.08
33997496--33997570	9	8.6	9	75	11	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33997438--33997566	12	11.2	12	71	14	58	50	0	0	48	1.06
33997536--33997569	3	11.3	3	100	0	68	64	0	0	35	0.94
33999754--33999778	12	2.1	12	100	0	50	32	0	16	52	1.44
34000702--34000862	31	5.4	31	71	11	120	24	14	12	47	1.79
34000702--34000886	60	3.1	59	83	2	219	24	14	12	48	1.78
34000730--34000904	60	3.0	57	79	4	152	26	14	11	47	1.78
34001043--34001210	86	1.9	87	86	3	241	45	14	17	22	1.85
34001093--34001227	31	4.5	31	68	19	99	46	13	15	24	1.82
34001415--34001460	16	2.8	17	76	6	58	34	2	0	63	1.07
34006162--34006273	60	1.9	59	83	5	147	25	10	8	54	1.64
34018495--34018564	36	1.9	36	85	2	95	45	5	1	47	1.35
34021760--34021798	19	2.1	19	85	0	51	69	7	0	23	1.14
34030131--34030250	60	2.0	58	80	4	132	37	19	23	20	1.94
34042379--34042412	15	2.2	16	89	5	52	32	0	0	67	0.91
34042626--34042660	16	2.1	17	89	5	54	42	14	0	42	1.45
34042980--34043005	3	8.7	3	100	0	52	0	34	0	65	0.93
34052885--34052957	24	3.0	24	83	0	83	31	20	30	17	1.96
34053538--34053577	15	2.8	13	85	10	53	2	25	0	72	0.97
34054628--34054840	103	2.1	103	100	0	426	41	21	10	26	1.85
34058047--34058078	15	2.1	15	100	0	64	18	31	12	37	1.88
34058874--34059013	53	2.6	53	88	0	199	36	22	15	25	1.94
34062707--34062778	2	36.0	2	100	0	144	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34064052--34064080	8	3.8	8	90	9	51	44	0	0	55	0.99
34065525--34065564	17	2.4	17	87	8	55	32	0	0	67	0.91
34065651--34065697	24	1.9	25	86	4	69	61	8	6	23	1.48
34071878--34071932	18	3.1	17	73	23	51	9	10	10	69	1.38
34073368--34073402	18	1.9	18	88	11	54	42	5	5	45	1.51
34077123--34077194	18	4.2	18	75	19	64	34	1	0	63	1.03
34077136--34077185	9	5.6	9	77	17	59	28	2	0	70	0.99
34077161--34077200	18	2.2	18	86	8	55	32	2	0	65	1.06
34084875--34085115	52	4.6	52	87	2	322	28	16	23	31	1.96
34085518--34085564	23	2.0	23	84	8	60	34	8	14	42	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135