genome.fa.s2.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  112  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33616653--33616688	18	2.0	18	88	0	54	25	25	19	30	1.98
33616662--33616696	18	1.9	18	88	0	52	25	28	14	31	1.95
33621405--33621442	16	2.4	16	91	4	60	34	2	0	63	1.09
33622120--33622178	31	1.9	31	85	0	82	49	8	13	28	1.71
33622101--33622585	170	2.8	169	82	6	566	46	8	12	32	1.73
33623117--33623169	27	1.9	27	84	3	70	56	0	0	43	0.99
33628788--33628814	13	2.1	13	100	0	54	44	0	0	55	0.99
33632745--33632940	59	3.3	59	86	1	286	33	2	32	32	1.70
33632745--33632943	29	6.8	28	73	18	140	33	2	33	31	1.69
33633747--33635482	869	2.0	869	99	0	3427	28	14	16	40	1.87
33635690--33635819	17	7.5	17	82	7	154	54	3	1	40	1.25
33635690--33635819	35	3.7	35	85	2	163	54	3	1	40	1.25
33635709--33635787	6	13.5	6	75	10	74	54	2	1	41	1.22
33636082--33637151	76	14.1	75	91	1	1565	31	19	15	33	1.93
33641948--33641981	14	2.3	15	90	5	52	2	23	2	70	1.15
33648654--33648762	30	3.7	29	74	14	105	35	1	29	33	1.68
33648654--33648770	59	2.0	59	94	3	209	35	1	29	32	1.68
33648671--33648764	29	3.2	28	74	14	100	34	2	29	34	1.70
33648682--33648774	29	3.2	28	73	14	98	33	3	32	31	1.74
33650681--33650810	17	7.5	17	83	7	163	54	2	1	41	1.22
33650702--33650792	11	7.8	11	74	17	60	57	2	1	39	1.18
33650681--33650810	35	3.7	35	86	2	172	54	2	1	41	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33650700--33650810	6	19.0	6	71	15	81	55	2	0	40	1.20
33653489--33653540	26	2.0	27	81	11	63	42	17	0	40	1.49
33654917--33655363	229	2.0	229	82	3	551	43	7	9	39	1.65
33656763--33656812	26	1.9	26	95	0	91	64	4	8	24	1.38
33656765--33656828	26	2.4	26	84	7	76	67	4	9	18	1.37
33657352--33657466	59	2.0	59	83	8	146	33	23	3	39	1.72
33657381--33657602	30	7.6	29	76	10	145	33	23	2	40	1.67
33657337--33657593	30	8.8	29	74	10	141	33	23	3	39	1.71
33657352--33657529	58	3.1	58	77	12	150	32	26	3	37	1.73
33657384--33657583	88	2.3	89	78	4	226	34	25	2	38	1.69
33657423--33657604	59	3.1	58	77	10	163	32	24	2	41	1.67
33672909--33672939	15	2.1	15	93	0	53	54	0	0	45	0.99
33682944--33682985	21	2.0	22	90	4	68	42	16	16	23	1.88
33683982--33684018	16	2.3	16	90	0	56	2	21	0	75	0.92
33684175--33684225	24	2.1	24	88	0	75	23	9	7	58	1.56
33684191--33684237	24	2.0	24	86	0	67	25	12	8	53	1.67
33685983--33686044	24	2.6	24	86	0	88	25	14	9	50	1.73
33686714--33686773	30	2.0	30	83	9	77	28	16	8	46	1.76
33691308--33691340	14	2.4	14	90	10	50	60	0	0	39	0.97
33692343--33692376	15	2.3	15	94	0	59	70	2	0	26	1.01
33706362--33706425	28	2.3	28	83	5	76	54	1	4	39	1.31
33716903--33716971	19	3.7	19	74	14	72	31	1	4	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33716892--33716987	37	2.5	37	83	6	122	31	1	7	60	1.31
33716870--33716998	37	3.6	34	74	20	113	32	0	6	59	1.29
33717016--33717054	14	2.6	15	88	8	53	33	0	0	66	0.92
33717048--33717081	17	2.0	17	88	0	50	20	2	2	73	1.09
33717010--33717081	8	9.0	8	70	21	53	27	1	1	69	1.05
33722024--33722077	27	2.0	27	85	0	72	29	20	5	44	1.74
33725047--33725088	21	1.9	23	85	9	61	50	11	7	30	1.66
33739718--33739899	79	2.3	79	87	3	262	24	20	26	28	1.99
33740909--33740963	21	2.6	21	85	8	67	16	16	41	25	1.88
33743340--33743528	59	3.2	56	76	11	166	39	6	22	30	1.80
33743506--33743559	28	1.9	28	92	0	90	27	7	31	33	1.84
33743543--33743674	58	2.3	58	80	5	151	41	3	22	31	1.72
33743687--33743949	29	8.9	29	80	10	259	36	2	24	37	1.68
33743669--33743949	59	4.8	59	78	8	272	34	2	25	37	1.69
33753551--33753639	11	7.6	12	73	14	78	43	3	3	49	1.35
33753524--33753653	17	8.1	16	68	20	76	43	2	4	50	1.35
33753551--33753639	6	15.2	6	75	13	78	43	3	3	49	1.35
33755481--33755766	29	10.0	28	70	13	145	36	25	2	36	1.69
33755490--33755835	58	6.0	56	82	7	268	34	26	2	35	1.71
33755490--33755835	116	3.0	116	77	9	314	34	26	2	35	1.71
33755511--33755835	29	11.2	29	71	15	201	34	26	2	36	1.70
33767844--33767963	48	2.5	48	87	0	177	36	15	26	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33767891--33768452	200	2.8	200	87	1	793	35	20	23	20	1.96
33768343--33768538	87	2.3	87	95	0	347	35	17	22	23	1.95
33768860--33768989	17	8.1	17	69	20	75	43	2	3	50	1.33
33768860--33768975	6	20.0	6	71	16	84	42	2	4	50	1.35
33768860--33768975	11	10.0	12	72	16	84	42	2	4	50	1.35
33770841--33771026	29	6.4	28	72	14	135	33	30	2	33	1.72
33770872--33771113	58	4.2	57	83	7	272	31	29	2	35	1.72
33770872--33771113	117	2.1	114	84	9	319	31	29	2	35	1.72
33772761--33773067	116	2.6	114	75	10	273	39	6	23	30	1.80
33773024--33773268	29	8.5	29	78	9	193	33	4	26	35	1.77
33773075--33773366	59	5.0	58	80	6	275	33	3	26	36	1.72
33773075--33773397	30	11.0	29	80	4	231	33	3	26	36	1.72
33775421--33775475	6	9.7	6	75	11	53	54	1	1	41	1.21
33775420--33775475	11	5.0	11	82	4	67	55	1	1	41	1.21
33775403--33775478	17	4.6	16	83	8	80	51	2	2	43	1.29
33775440--33775495	28	2.0	28	89	0	85	53	1	5	39	1.34
33788662--33789080	29	14.7	29	77	9	317	35	2	26	34	1.72
33788683--33789080	86	4.6	85	75	12	305	36	3	26	34	1.72
33788732--33788969	84	2.8	84	79	8	234	34	3	27	34	1.74
33788689--33788998	113	2.7	114	84	4	367	35	3	28	33	1.73
33789005--33789083	28	2.7	29	80	5	88	41	1	18	37	1.59
33790655--33790688	17	2.0	17	94	0	59	44	0	2	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33793809--33793860	26	2.0	26	85	3	70	21	23	3	51	1.63
33795090--33795148	6	10.3	6	74	17	54	54	1	1	42	1.20
33795090--33795148	17	3.5	16	81	9	73	54	1	1	42	1.20
33795094--33795149	11	5.0	11	78	8	51	55	1	1	41	1.21
33797355--33797396	21	2.0	22	85	4	59	42	0	7	50	1.30
33797803--33797874	31	2.4	30	75	6	74	33	9	15	41	1.80
33798097--33798135	20	1.9	21	84	5	53	41	10	2	46	1.51
33803493--33803575	42	2.0	42	87	0	121	48	7	4	39	1.52
33805488--33805593	53	2.0	53	100	0	212	33	22	3	39	1.72
33811644--33811687	23	1.9	23	90	0	70	50	4	6	38	1.50
33815393--33815417	2	12.5	2	100	0	50	52	0	0	48	1.00
33815551--33815585	18	1.9	19	88	11	56	65	0	2	31	1.07
33815639--33815729	30	3.1	30	75	19	84	56	0	3	40	1.16
33815642--33815729	39	2.3	38	81	15	101	56	0	3	39	1.16
33815642--33815729	10	9.1	10	71	6	56	56	0	3	39	1.16
33820578--33820638	29	2.1	29	90	6	97	3	49	4	42	1.40
33829112--33829158	22	2.1	23	96	4	87	8	4	17	70	1.29
33829118--33829216	24	4.2	22	77	10	90	11	6	14	68	1.37
33829176--33829238	12	5.3	12	76	3	56	9	4	14	71	1.28
33829118--33829239	47	2.6	47	78	10	115	9	5	16	68	1.37
33830553--33830597	23	2.0	23	95	0	81	46	6	0	46	1.29
33844250--33844295	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33844863--33844966	45	2.3	45	89	0	163	41	20	17	21	1.90
33844919--33844979	31	2.0	31	86	0	86	40	16	18	24	1.90
33847407--33847452	15	3.0	16	71	12	51	13	10	60	15	1.58
33850520--33850569	22	2.2	22	79	10	57	54	0	10	36	1.34
33851489--33851521	9	3.8	9	84	8	50	0	0	72	27	0.85
33853056--33853271	86	2.5	86	92	0	353	37	10	8	43	1.69
33853278--33853490	76	2.8	75	83	4	268	34	14	8	42	1.77
33854264--33854547	143	2.0	144	86	4	405	40	8	20	31	1.82
33854649--33854673	2	12.5	2	100	0	50	48	0	0	52	1.00
33858400--33858462	12	5.9	11	75	24	64	53	1	0	44	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135