genome.fa.s2.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  107  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32700194--32700358	30	5.6	30	76	12	139	36	6	23	33	1.79
32700194--32700358	29	5.6	31	75	14	113	36	6	23	33	1.79
32701407--32701452	20	2.3	20	85	3	58	41	0	0	58	0.98
32702184--32702223	14	3.0	14	85	7	57	57	0	0	42	0.98
32702719--32703219	164	3.2	152	83	9	594	22	22	20	34	1.97
32715509--32715766	29	8.8	30	69	20	129	36	4	23	35	1.76
32715441--32715795	59	6.0	58	75	8	265	37	5	23	33	1.78
32715477--32715784	117	2.6	117	77	3	314	37	5	22	34	1.78
32715478--32715795	59	5.4	58	76	7	284	36	5	23	34	1.78
32715652--32715820	30	5.7	31	75	13	117	38	5	22	33	1.78
32716856--32716901	20	2.3	20	85	3	58	41	0	0	58	0.98
32717636--32717710	6	12.5	6	73	16	66	53	1	1	44	1.17
32717636--32717710	17	4.5	17	81	11	93	53	1	1	44	1.17
32717641--32717687	25	1.9	24	83	12	60	53	0	2	44	1.12
32718576--32718614	20	2.0	21	90	10	64	51	0	23	25	1.49
32719830--32719858	2	14.5	2	100	0	58	0	48	0	51	1.00
32720434--32720634	23	8.9	23	76	5	113	27	13	16	42	1.86
32720517--32720634	46	2.6	46	84	0	146	30	15	12	41	1.84
32723530--32723583	21	2.6	21	82	5	56	29	12	24	33	1.92
32726981--32727025	20	2.4	19	85	7	56	6	20	4	68	1.29
32732306--32732361	3	19.7	3	80	7	55	28	1	3	66	1.19
32751643--32751786	43	3.3	43	86	0	198	27	25	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32752579--32753041	233	2.0	233	100	0	926	36	13	8	41	1.74
32753510--32753563	27	2.0	27	92	0	90	35	20	1	42	1.63
32753828--32753888	26	2.3	26	82	0	68	9	27	1	60	1.38
32754137--32754179	11	3.8	11	80	17	52	65	0	2	32	1.06
32754704--32754798	43	2.2	43	83	3	111	26	24	17	31	1.97
32760309--32760395	28	3.1	29	84	1	97	22	24	14	37	1.92
32760322--32760395	28	2.6	28	86	0	103	24	27	12	36	1.91
32760434--32760497	26	2.5	26	89	0	101	32	25	23	18	1.97
32761264--32761322	18	3.3	18	81	9	75	55	0	8	35	1.30
32762058--32762149	39	2.4	39	96	0	166	46	9	14	29	1.76
32764541--32764715	59	2.9	59	84	3	165	33	6	29	30	1.82
32764605--32764867	30	8.9	29	77	10	87	35	3	25	35	1.72
32764583--32764715	59	2.2	59	92	4	214	35	3	27	33	1.75
32764576--32764717	60	2.4	59	90	3	223	33	4	29	32	1.79
32764621--32764897	59	4.7	57	79	10	215	35	3	24	36	1.72
32764689--32764897	30	7.0	30	89	2	289	35	2	24	37	1.70
32766671--32766729	21	2.7	23	75	21	63	30	6	35	27	1.83
32766752--32766860	6	18.0	6	72	15	73	47	1	1	48	1.23
32766796--32766845	25	2.0	25	88	0	73	54	4	0	42	1.19
32766789--32766852	31	2.1	31	88	5	94	53	3	1	42	1.26
32766767--32766860	42	2.3	43	83	5	113	50	2	1	46	1.20
32766821--32766862	16	2.5	17	76	7	50	57	2	2	38	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32769131--32769197	30	2.3	29	86	2	89	26	14	10	47	1.77
32775689--32775733	18	2.5	18	77	0	54	44	2	4	48	1.35
32776765--32776794	12	2.4	13	88	11	53	16	13	6	63	1.50
32793464--32793534	36	2.0	36	83	10	92	61	2	0	35	1.10
32793544--32793620	31	2.4	32	82	10	86	67	3	1	27	1.16
32799621--32799667	20	2.4	19	74	22	51	74	0	21	4	0.99
32801586--32801676	36	2.6	36	89	1	130	37	14	14	34	1.86
32804689--32804740	3	17.3	3	100	0	104	67	0	0	32	0.91
32805869--32805903	15	2.4	15	90	4	54	14	5	31	48	1.67
32805893--32805947	21	2.3	24	76	23	71	20	0	36	43	1.52
32805900--32805956	21	2.7	21	94	0	96	26	0	31	42	1.56
32806721--32806767	17	2.8	17	93	0	76	40	2	0	57	1.11
32806937--32806963	14	1.9	14	100	0	54	7	29	22	40	1.81
32807193--32807255	28	2.1	30	83	16	78	31	6	1	60	1.31
32810375--32810569	29	6.7	29	70	14	125	31	4	30	33	1.78
32810373--32810571	59	3.4	59	94	2	339	30	5	31	33	1.79
32810373--32810657	30	9.7	30	73	19	144	32	4	28	34	1.78
32810755--32811079	162	2.0	162	89	1	499	46	12	15	25	1.81
32810801--32811151	162	2.2	161	82	4	420	49	13	15	22	1.79
32812614--32812691	6	13.8	6	72	17	60	55	2	1	41	1.22
32812614--32812691	17	4.7	16	82	7	93	55	2	1	41	1.22
32812654--32812709	28	2.0	28	82	6	69	60	3	0	35	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32814586--32814655	6	12.0	6	75	6	63	54	4	0	41	1.20
32814574--32814666	18	5.1	18	77	12	82	55	4	0	39	1.19
32815694--32815935	120	2.0	121	92	2	407	28	16	5	49	1.67
32820048--32820081	3	11.3	3	100	0	68	67	0	32	0	0.91
32822115--32822420	49	6.3	49	73	6	244	40	16	23	19	1.91
32822115--32822378	97	2.7	97	84	1	350	40	16	23	19	1.91
32822353--32822885	98	5.7	96	76	12	454	39	18	22	18	1.92
32822381--32822817	86	4.8	86	73	13	365	39	19	21	19	1.93
32822353--32822817	181	2.5	182	88	3	666	39	18	22	19	1.92
32822633--32822890	49	5.3	48	72	11	193	39	18	23	18	1.92
32822632--32822939	98	3.1	98	86	4	320	40	19	23	17	1.91
32829285--32829637	146	2.4	146	82	3	424	35	7	24	31	1.84
32829430--32829490	28	2.1	29	79	11	72	27	8	26	37	1.85
32829595--32829862	30	9.1	31	72	16	162	37	4	23	34	1.75
32829477--32829862	59	6.6	60	76	8	228	37	4	23	33	1.76
32829595--32829821	87	2.6	86	83	6	258	36	4	24	33	1.77
32829590--32829882	29	10.0	29	71	10	177	36	4	23	35	1.76
32829711--32829881	59	2.9	60	76	11	167	37	4	21	37	1.72
32831766--32831860	17	5.6	17	82	0	109	57	6	2	33	1.35
32831756--32831852	51	1.9	50	89	2	149	57	6	2	34	1.35
32832688--32832745	7	8.0	7	81	14	57	82	0	13	3	0.79
32832691--32832740	8	6.5	8	83	4	50	84	0	12	4	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32833661--32834251	49	12.0	50	73	8	365	33	18	30	17	1.94
32833668--32834250	99	5.9	99	73	7	294	33	18	30	17	1.94
32833672--32834138	148	3.1	149	78	6	423	33	18	30	16	1.94
32833860--32834232	197	1.9	197	85	1	514	34	17	29	18	1.94
32834522--32834672	78	1.9	78	82	5	189	27	29	15	27	1.96
32834572--32834855	118	2.4	117	79	7	315	26	29	17	26	1.97
32834644--32834855	78	2.7	78	82	2	246	25	30	16	26	1.97
32834594--32834855	39	6.7	39	71	11	185	26	30	16	26	1.97
32834717--32834882	39	4.3	39	73	6	113	27	31	15	25	1.96
32834684--32834882	78	2.6	78	80	3	195	27	31	16	25	1.96
32835056--32835155	37	2.7	36	89	3	155	34	19	23	24	1.97
32835091--32835627	209	2.6	207	85	4	699	35	16	22	24	1.94
32835462--32835619	85	1.9	85	82	5	203	32	14	25	27	1.95
32835997--32836043	17	2.8	17	93	0	76	40	2	2	55	1.24
32836450--32836502	2	27.5	2	75	21	51	43	3	0	52	1.19
32836461--32836529	33	2.3	31	83	16	83	34	5	1	57	1.31
32836479--32836529	17	3.2	15	76	13	57	31	5	1	60	1.31
32839730--32839781	24	2.2	24	100	0	104	11	28	13	46	1.78
32841680--32841729	21	2.3	21	80	10	57	30	4	4	62	1.32
32841904--32841956	24	2.1	26	82	6	65	45	18	3	32	1.68
32851162--32851197	3	12.0	3	100	0	72	66	0	0	33	0.92
32856205--32856255	2	26.0	2	94	4	86	52	0	47	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32865914--32865938	6	4.2	6	100	0	50	68	16	0	16	1.22
32869883--32870194	153	2.0	155	88	3	470	38	15	14	32	1.87
32872416--32872471	18	3.1	18	72	10	51	35	0	0	64	0.94
32873249--32873278	15	2.0	15	93	0	51	56	13	3	26	1.52
32873242--32873288	24	1.9	25	86	4	69	53	12	4	29	1.58
32873261--32873299	19	2.0	20	90	5	62	53	12	5	28	1.60
32877913--32877951	15	2.5	15	88	12	53	38	10	48	2	1.51
32877948--32878008	12	5.2	12	84	9	63	19	13	63	3	1.42
32877955--32878008	6	9.2	6	87	4	83	18	14	64	1	1.37
32884800--32884863	31	2.1	31	94	2	112	60	4	3	31	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135