genome.fa.s2.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  126  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38245301--38245363	30	2.1	30	100	0	126	20	14	15	49	1.80
38251027--38251065	20	2.0	20	100	0	78	56	5	17	20	1.60
38251031--38251076	20	2.2	20	84	3	56	56	6	10	26	1.58
38253062--38253190	60	2.2	60	89	0	195	40	11	6	41	1.66
38259424--38259573	20	7.6	19	67	20	60	57	7	16	19	1.62
38259541--38259590	19	2.5	19	80	6	55	62	0	10	28	1.27
38259625--38259672	20	2.4	20	78	0	51	56	6	18	18	1.62
38259945--38260006	20	3.3	19	73	8	65	62	0	11	25	1.28
38259920--38260016	36	2.5	40	80	12	121	62	2	12	22	1.39
38259947--38260045	20	5.1	20	70	14	64	57	3	15	24	1.52
38262957--38263233	59	4.6	59	79	9	262	30	15	14	38	1.88
38262975--38263234	119	2.2	119	83	8	318	31	14	15	39	1.87
38263150--38263322	89	1.9	91	84	11	232	31	12	13	42	1.82
38263098--38263382	149	1.9	148	79	8	319	30	14	14	41	1.85
38263246--38263472	60	3.8	57	73	15	181	27	16	15	40	1.89
38263237--38263472	120	2.0	121	83	7	302	27	16	16	40	1.89
38263246--38263472	61	3.8	59	76	6	215	27	16	15	40	1.89
38264227--38264338	30	3.8	28	76	20	104	59	1	8	30	1.36
38265465--38265489	13	1.9	13	100	0	50	56	0	8	36	1.29
38265514--38265551	20	1.9	20	94	0	67	63	0	7	28	1.23
38265515--38265558	20	2.2	20	87	0	61	68	0	4	27	1.09
38266562--38266613	22	2.4	22	80	0	59	19	5	34	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38266562--38266620	22	2.7	21	76	10	55	22	5	32	40	1.75
38266712--38267484	84	9.2	84	89	2	1135	46	4	5	43	1.49
38267626--38267660	16	2.1	17	89	5	54	51	8	0	40	1.33
38271408--38271711	121	2.5	116	78	9	297	38	15	17	28	1.90
38271384--38271711	60	5.5	58	75	11	263	37	16	18	28	1.92
38279767--38279856	30	3.0	30	100	0	180	36	16	3	43	1.65
38285129--38285160	10	3.2	10	100	0	64	90	0	9	0	0.45
38302043--38302122	29	2.6	30	86	5	99	31	10	15	43	1.79
38302068--38302133	29	2.2	29	84	7	80	30	12	12	45	1.78
38302600--38302640	19	2.0	21	86	9	59	51	7	0	41	1.30
38303657--38303690	14	2.5	13	86	9	50	32	11	8	47	1.71
38303909--38303939	14	2.2	14	94	0	53	32	0	0	67	0.91
38305507--38305606	53	1.9	52	87	6	148	30	13	20	37	1.90
38332759--38332806	23	2.1	23	88	0	69	47	20	27	4	1.68
38332764--38332847	23	3.6	23	83	1	105	45	20	27	7	1.77
38335044--38335082	3	13.0	3	100	0	78	66	0	33	0	0.92
38341800--38341840	22	1.9	22	85	14	59	43	0	0	56	0.99
38341814--38341863	16	3.2	16	72	16	59	48	0	0	52	1.00
38349601--38349630	1	30.0	1	93	0	51	0	0	3	96	0.21
38359137--38359185	23	2.1	23	84	0	62	61	4	2	32	1.26
38361505--38361535	2	15.5	2	100	0	62	51	0	0	48	1.00
38361535--38361608	2	37.0	2	100	0	148	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38371492--38371522	5	6.2	5	92	0	53	77	3	0	19	0.90
38373387--38373412	7	3.7	7	100	0	52	88	0	0	11	0.52
38395926--38395953	2	14.0	2	100	0	56	50	0	0	50	1.00
38401445--38401553	51	2.1	51	87	0	155	34	11	30	22	1.90
38401504--38401661	60	2.6	61	81	2	185	35	14	29	20	1.92
38406728--38406764	12	2.9	13	84	8	58	59	0	0	40	0.97
38407243--38407570	109	3.0	110	84	6	425	42	13	19	23	1.87
38417779--38417808	15	2.0	15	93	0	51	76	6	0	16	0.99
38431294--38431332	19	2.1	19	90	9	62	48	0	0	51	1.00
38431288--38431335	17	2.7	17	77	20	53	39	2	0	58	1.10
38437874--38437906	17	1.9	17	88	11	50	48	0	0	51	1.00
38437881--38437920	10	3.2	13	76	23	50	50	0	0	50	1.00
38438750--38438829	41	2.0	41	87	0	115	63	11	3	21	1.42
38439475--38439527	24	2.2	24	82	0	61	62	3	3	30	1.30
38439485--38439532	24	2.0	24	87	0	69	66	0	2	31	1.03
38450144--38450234	27	3.4	28	83	3	89	47	26	3	23	1.67
38453492--38453534	15	2.8	15	76	16	52	60	0	0	39	0.97
38453493--38453547	18	3.1	18	81	0	65	54	0	0	45	0.99
38455558--38455667	29	3.8	29	67	8	71	34	3	25	36	1.74
38455634--38455737	30	3.5	30	77	4	102	38	2	20	38	1.67
38455576--38455750	59	2.9	58	80	8	176	34	4	25	36	1.75
38455570--38455745	29	6.0	29	75	10	137	33	3	26	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38457089--38457160	6	12.0	6	77	11	60	52	0	1	45	1.09
38457097--38457148	17	3.1	17	88	5	70	53	0	1	44	1.11
38457132--38457163	7	4.6	7	100	0	64	56	0	0	43	0.99
38458594--38458635	22	2.0	22	85	4	59	57	4	7	30	1.47
38458667--38458772	31	3.6	30	67	14	76	27	15	11	46	1.79
38458667--38458776	58	1.9	58	90	0	175	26	14	10	48	1.77
38458996--38459075	30	2.6	28	78	18	81	48	6	16	28	1.70
38463507--38463533	8	3.4	8	100	0	54	29	0	0	70	0.88
38465747--38465784	2	19.0	2	100	0	76	50	0	0	50	1.00
38500460--38500531	31	2.4	31	88	11	105	43	9	12	34	1.76
38507362--38507400	18	2.0	20	85	9	55	46	5	7	41	1.55
38507710--38507744	18	1.9	18	88	11	54	54	2	2	40	1.30
38515047--38515178	29	4.6	27	76	16	97	27	4	2	65	1.23
38515065--38515177	9	11.5	10	67	22	53	25	3	2	68	1.19
38515042--38515127	39	2.2	37	82	8	109	26	6	0	66	1.17
38515962--38516001	18	2.2	19	90	4	64	67	0	0	32	0.91
38517998--38518067	27	2.6	27	93	0	113	15	30	30	24	1.96
38522329--38522386	28	2.1	28	83	6	73	32	1	15	50	1.55
38524562--38524618	31	1.9	30	89	7	89	47	0	3	49	1.18
38525270--38525303	17	2.0	17	94	0	59	52	2	0	44	1.16
38537211--38537238	13	2.2	13	100	0	56	28	0	25	46	1.53
38537270--38537351	34	2.4	35	80	11	91	51	1	2	45	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38542612--38542737	23	5.4	22	85	5	126	11	23	21	44	1.84
38542611--38542736	46	2.7	47	82	6	157	11	23	21	43	1.85
38542635--38542784	69	2.2	66	85	11	194	12	22	20	45	1.84
38543930--38543985	28	2.0	28	82	0	67	23	25	14	37	1.92
38545907--38545988	41	2.0	41	100	0	164	34	12	9	43	1.75
38549304--38549379	31	2.5	30	76	6	82	35	5	11	47	1.63
38553563--38553634	29	2.4	29	84	13	85	47	13	15	23	1.81
38555375--38555413	20	2.0	20	84	0	51	46	17	7	28	1.76
38558451--38558530	41	2.0	41	100	0	160	55	6	22	16	1.63
38559826--38559903	39	2.0	40	82	2	95	60	6	3	29	1.39
38560879--38560917	2	19.5	2	100	0	78	51	0	0	48	1.00
38571217--38571251	12	2.8	13	86	8	54	60	5	2	31	1.35
38572174--38572216	22	2.0	22	86	9	61	65	6	4	23	1.37
38580161--38580191	15	2.1	15	93	0	53	19	29	9	41	1.83
38581728--38581773	2	23.0	2	100	0	92	50	0	0	50	1.00
38589031--38589055	12	2.1	12	100	0	50	36	0	0	64	0.94
38589881--38589905	5	5.0	5	100	0	50	0	40	60	0	0.97
38593528--38593568	20	2.0	20	90	9	66	65	12	21	0	1.25
38598213--38598241	14	2.0	15	93	6	51	31	0	0	68	0.89
38599394--38599505	57	2.0	57	98	0	215	45	0	8	45	1.34
38607772--38607821	24	2.1	24	85	7	66	74	2	2	22	1.03
38609011--38609063	20	2.8	20	81	13	60	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38612748--38612786	3	13.0	3	100	0	78	33	0	0	66	0.92
38613860--38613898	3	13.0	3	100	0	78	33	0	0	66	0.92
38620709--38620784	22	3.4	23	78	12	77	9	5	18	67	1.38
38620709--38620793	44	1.9	45	82	2	109	10	5	16	67	1.40
38620724--38620793	22	3.2	22	78	8	70	12	5	12	68	1.37
38620778--38620818	21	2.0	21	85	0	55	14	7	14	63	1.50
38620750--38620838	33	2.6	34	82	10	103	11	5	15	67	1.39
38620784--38620826	21	2.1	21	86	4	61	13	6	11	67	1.41
38620811--38620853	12	3.6	12	80	0	50	6	2	16	74	1.14
38620778--38620854	24	3.3	23	80	8	77	11	5	14	68	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135