genome.fa.s2.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  114  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34089451--34089481	14	2.2	14	100	0	62	35	19	22	22	1.96
34092249--34092304	28	2.0	28	96	0	103	41	17	8	32	1.81
34098125--34098170	14	2.9	17	75	18	53	52	0	0	47	1.00
34098125--34098168	15	2.8	16	83	13	56	52	0	0	47	1.00
34098294--34098339	15	3.1	15	73	17	51	54	10	8	26	1.64
34105555--34105623	31	2.2	31	100	0	138	18	10	17	53	1.71
34105565--34105634	31	2.3	31	89	0	104	21	11	18	48	1.79
34110057--34110132	31	2.5	31	78	2	82	28	17	9	44	1.79
34110469--34110510	22	1.9	22	85	9	59	64	7	0	28	1.20
34111223--34111258	2	18.0	2	100	0	72	0	50	0	50	1.00
34112025--34112052	6	4.7	6	100	0	56	82	0	17	0	0.68
34117450--34117481	16	1.9	17	93	6	57	31	0	9	59	1.29
34124084--34124132	2	24.5	2	100	0	98	51	0	0	48	1.00
34124348--34124422	32	2.3	33	80	11	84	62	4	0	33	1.14
34125912--34125962	24	2.1	24	88	0	75	52	11	11	23	1.70
34127884--34127940	24	2.4	24	81	0	69	56	12	8	22	1.63
34129838--34129898	30	2.0	30	90	6	97	29	19	11	39	1.87
34132062--34132098	18	2.1	18	89	0	56	24	27	0	48	1.51
34132395--34132430	18	2.1	18	89	5	56	33	25	0	41	1.55
34133208--34133271	31	2.1	31	93	0	110	17	17	6	59	1.57
34133679--34133718	17	2.3	18	83	12	57	47	0	10	42	1.37
34137815--34137853	16	2.5	16	83	4	53	71	0	2	25	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34140354--34140391	20	1.9	20	100	0	76	50	0	0	50	1.00
34141389--34141427	21	1.9	20	84	5	51	41	5	10	43	1.61
34144480--34144514	13	2.7	13	95	0	61	11	8	42	37	1.72
34147626--34147676	15	3.4	15	81	7	59	66	0	5	27	1.14
34155385--34155431	16	2.9	16	80	0	58	42	2	23	31	1.66
34155420--34155513	44	2.1	46	84	7	122	38	4	17	40	1.69
34155696--34155727	2	16.0	2	100	0	64	50	0	0	50	1.00
34155845--34156020	61	2.9	61	80	6	162	43	5	14	36	1.69
34156111--34156149	20	1.9	21	89	5	62	66	2	0	30	1.05
34163992--34164051	27	2.2	28	79	11	70	26	11	28	33	1.91
34164125--34164228	29	3.6	29	70	12	77	32	6	25	35	1.82
34164037--34164261	59	3.8	59	77	9	210	36	6	22	34	1.79
34164184--34164350	89	1.9	88	82	6	212	35	3	23	37	1.72
34164208--34164385	30	5.9	30	76	10	143	34	3	23	38	1.71
34164154--34164354	29	6.8	29	72	10	138	34	2	22	39	1.69
34165411--34165444	18	1.9	17	94	5	59	44	0	0	55	0.99
34165740--34165796	30	1.9	30	96	0	105	31	10	19	38	1.86
34176817--34176924	54	2.0	54	100	0	216	24	20	12	42	1.87
34186298--34186423	23	5.5	23	92	0	182	9	23	24	42	1.83
34192527--34192641	23	4.9	23	85	7	135	11	24	22	41	1.86
34192527--34192617	45	2.0	46	86	2	130	10	23	23	42	1.85
34202657--34202698	20	2.1	20	90	0	66	40	21	21	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34202693--34202740	21	2.3	21	88	0	69	29	29	25	16	1.97
34202660--34202705	7	6.7	7	80	5	58	34	23	23	17	1.96
34202777--34202806	15	2.0	15	93	0	51	20	3	33	43	1.68
34222470--34222515	23	2.0	23	91	0	74	56	4	4	34	1.39
34230258--34230305	25	1.9	25	95	0	87	58	14	2	25	1.48
34236941--34236990	18	2.6	20	84	6	59	32	26	6	36	1.81
34241424--34241463	17	2.4	17	83	4	55	45	5	20	30	1.72
34241642--34241730	20	4.6	20	68	13	69	56	1	0	42	1.06
34241613--34241771	57	2.8	57	88	3	230	54	0	0	44	1.09
34250516--34250578	24	2.9	21	70	21	56	20	34	17	26	1.95
34253489--34253531	17	2.5	17	88	0	59	62	2	32	2	1.20
34255418--34255459	18	2.3	18	87	0	57	26	9	42	21	1.83
34256401--34256443	19	2.3	18	88	4	59	60	0	2	37	1.10
34261800--34261893	32	3.1	31	68	27	85	46	8	11	32	1.71
34262351--34262383	7	4.7	7	96	0	57	30	24	30	15	1.95
34269371--34269399	5	5.8	5	100	0	58	0	17	0	82	0.66
34273922--34273954	8	4.1	8	96	0	57	27	0	0	72	0.85
34275584--34275751	27	6.2	27	70	10	119	26	2	10	61	1.40
34275634--34275674	13	3.0	14	82	7	57	26	0	12	60	1.31
34275631--34275693	28	2.3	27	88	2	90	30	0	11	58	1.32
34275713--34275756	22	2.1	21	87	8	63	25	0	6	68	1.14
34275648--34275750	54	1.9	55	84	6	138	27	1	11	59	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34275993--34276031	20	2.0	19	90	5	60	43	2	10	43	1.52
34278747--34278812	27	2.4	27	89	0	96	50	1	3	45	1.26
34279000--34279035	5	7.2	5	96	0	63	22	0	58	19	1.40
34279966--34280024	26	2.2	27	82	8	68	33	0	1	64	1.04
34280113--34280145	2	16.5	2	100	0	66	51	0	0	48	1.00
34280202--34280408	114	1.8	114	83	4	274	27	21	12	38	1.89
34286903--34286971	30	2.3	31	82	7	88	49	17	13	20	1.79
34287875--34287988	31	3.4	31	64	23	77	35	13	8	42	1.75
34287848--34287993	71	2.1	71	98	0	283	34	13	10	41	1.79
34287868--34287979	35	3.2	35	63	12	93	35	14	8	41	1.77
34291690--34291788	49	2.0	49	98	0	189	20	19	20	40	1.92
34297051--34297116	30	2.2	31	81	8	73	39	12	0	48	1.40
34303090--34303129	15	2.6	15	92	4	62	40	12	17	30	1.86
34303253--34303367	59	2.0	59	85	1	160	43	7	8	40	1.65
34306223--34306308	44	2.0	44	92	0	145	60	9	5	24	1.49
34309631--34309757	23	5.4	23	84	5	148	43	22	22	11	1.85
34309584--34309723	69	2.0	66	86	10	192	45	21	21	12	1.84
34315396--34315438	17	2.5	17	100	0	86	9	34	4	51	1.55
34317003--34317129	23	5.4	23	82	5	139	44	21	22	11	1.84
34317005--34317129	46	2.6	49	83	7	161	44	21	22	12	1.85
34316956--34317095	69	2.0	66	85	10	183	45	21	20	12	1.83
34320422--34320450	10	2.9	10	100	0	58	20	48	20	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34323668--34323723	25	2.1	28	78	12	66	33	0	8	57	1.30
34342897--34342938	5	8.4	5	100	0	84	19	40	21	19	1.92
34345792--34345887	21	4.6	21	76	12	90	15	11	11	61	1.57
34347365--34347448	21	4.0	21	81	1	107	21	11	9	57	1.63
34347557--34347605	20	2.4	20	82	3	53	20	12	10	57	1.64
34347386--34347701	170	1.9	171	87	3	467	33	12	11	42	1.78
34348786--34348824	20	2.0	20	100	0	78	30	5	20	43	1.73
34356262--34356292	3	10.3	3	100	0	62	67	0	32	0	0.91
34358274--34358326	25	2.1	27	83	13	69	52	3	1	41	1.30
34359633--34359689	30	1.9	30	85	7	80	49	0	1	49	1.11
34359649--34359700	24	2.2	24	86	6	70	51	0	0	48	1.00
34363418--34363460	13	3.2	13	83	3	50	69	4	0	25	1.07
34382952--34383043	23	4.0	24	82	10	95	16	16	23	43	1.87
34392952--34393006	17	3.1	19	68	21	55	47	10	7	34	1.66
34393031--34393120	46	2.0	46	82	4	110	55	10	7	26	1.60
34397408--34397454	22	2.0	22	88	8	67	42	12	10	34	1.78
34398401--34398434	3	11.0	3	87	6	50	64	0	2	32	1.08
34399495--34399541	7	7.0	7	76	9	53	34	25	23	17	1.96
34399495--34399541	20	2.3	20	85	7	60	34	25	23	17	1.96
34399495--34399541	13	3.5	13	88	2	58	34	25	23	17	1.96
34403227--34403266	20	2.0	20	100	0	80	30	20	35	15	1.93
34410869--34410916	14	3.2	14	80	13	51	60	2	0	37	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34420944--34421010	29	2.4	27	77	18	66	35	4	1	58	1.28
34424560--34424591	3	10.7	3	100	0	64	65	0	0	34	0.93
34433536--34433637	34	3.0	34	88	2	143	32	6	12	48	1.68
34439940--34440518	292	2.0	286	88	4	851	36	5	9	48	1.60
34441425--34441672	27	9.3	27	88	2	250	11	38	21	29	1.88
34455577--34455629	22	2.5	21	79	11	63	54	5	5	33	1.47
34455983--34456031	23	2.1	23	96	0	89	22	6	6	65	1.38
34462749--34462792	22	2.0	22	86	8	63	47	4	9	38	1.56
34463658--34463766	23	4.7	23	87	3	130	26	14	20	38	1.91
34463702--34463743	12	3.6	12	75	18	52	19	19	23	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135