genome.fa.s2.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  102  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31543469--31543530	21	3.1	21	63	32	55	24	11	24	40	1.87
31548972--31549026	27	2.0	27	100	0	110	38	14	7	40	1.74
31560873--31561093	111	2.0	110	91	2	363	48	15	16	19	1.81
31573543--31573604	30	2.1	30	90	0	97	38	22	6	32	1.80
31578990--31579028	17	2.4	16	82	4	51	56	2	0	41	1.13
31580842--31581029	51	3.6	51	83	3	225	31	12	25	30	1.93
31580842--31581029	102	1.8	103	84	7	256	31	12	25	30	1.93
31584659--31584701	22	1.9	23	90	4	70	25	9	9	55	1.61
31584959--31584999	7	5.9	7	82	0	55	26	0	26	46	1.53
31585097--31585189	28	3.5	28	64	24	74	52	15	0	32	1.42
31587499--31587542	22	2.0	22	82	8	54	45	2	18	34	1.62
31590334--31590384	22	2.3	23	81	15	56	66	9	0	23	1.21
31590512--31590565	28	1.9	28	82	14	67	70	3	1	24	1.13
31590512--31590566	29	1.9	28	82	10	67	70	3	1	23	1.12
31591113--31591150	3	12.7	3	100	0	76	68	0	0	31	0.90
31592312--31592360	14	3.4	14	75	13	55	36	0	10	53	1.35
31592288--31592328	22	1.9	22	90	5	66	36	4	12	46	1.63
31594178--31594335	81	2.0	81	81	5	185	41	4	5	48	1.45
31594276--31594326	16	3.2	16	73	13	52	49	0	1	49	1.12
31594520--31594578	31	1.9	31	82	0	73	40	6	5	47	1.52
31603732--31603777	22	2.0	24	83	12	60	65	6	0	28	1.17
31604905--31604948	22	2.0	22	82	8	54	25	0	29	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31610791--31610836	22	2.0	24	83	12	60	65	6	0	28	1.17
31615330--31615454	23	5.5	22	72	10	90	17	20	20	41	1.90
31615342--31615454	46	2.5	46	82	0	136	17	19	21	41	1.90
31617316--31617383	15	4.4	15	66	20	50	35	16	19	29	1.93
31617576--31617675	27	3.7	27	85	4	121	33	11	24	32	1.90
31623688--31623732	21	2.2	20	84	11	56	40	2	2	55	1.24
31624426--31624487	20	3.0	20	76	9	54	61	8	1	29	1.34
31625633--31625692	31	2.0	31	83	3	77	35	13	13	38	1.84
31625646--31625713	31	2.2	31	86	5	93	32	14	10	42	1.80
31630392--31630434	21	2.0	21	90	4	68	13	11	4	69	1.33
31630382--31630436	22	2.4	24	79	17	71	12	14	3	69	1.33
31635796--31635821	6	4.3	6	100	0	52	15	0	0	84	0.62
31635794--31635864	31	2.3	30	81	9	81	22	1	1	74	0.97
31635801--31635863	13	4.9	12	76	16	56	20	1	1	76	0.96
31637372--31637416	19	2.4	19	81	7	56	37	0	4	57	1.19
31638235--31638277	21	2.0	22	95	4	79	13	4	4	76	1.10
31641463--31641524	13	4.8	13	77	15	65	41	16	1	40	1.57
31641463--31641524	27	2.4	25	84	12	81	41	16	1	40	1.57
31641465--31641518	27	2.0	26	89	10	83	40	12	1	44	1.54
31641595--31641635	6	6.8	6	91	0	55	2	31	43	21	1.66
31641603--31641639	12	3.1	12	92	0	56	0	35	40	24	1.55
31644367--31644432	20	3.2	20	89	2	87	25	42	18	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31651050--31651080	12	2.6	12	94	0	53	90	3	6	0	0.55
31651141--31651178	18	2.1	18	100	0	76	36	21	26	15	1.93
31651919--31652052	50	2.7	47	76	13	126	38	17	27	17	1.92
31651973--31652213	48	4.9	49	72	9	179	35	17	28	18	1.94
31652435--31652904	41	11.5	41	86	2	622	34	19	16	30	1.94
31652972--31653254	78	3.6	78	79	3	277	27	31	14	25	1.95
31652969--31653254	156	1.8	156	81	4	362	27	32	14	25	1.95
31652891--31653151	117	2.2	117	77	12	277	27	31	15	26	1.96
31652891--31653170	39	7.2	39	69	10	162	27	31	15	26	1.95
31674615--31674679	21	3.0	22	67	13	62	46	4	1	47	1.32
31675096--31675136	20	2.0	20	85	0	55	36	2	0	60	1.10
31675773--31675824	13	4.0	13	82	0	59	36	23	5	34	1.79
31675773--31675824	26	2.0	26	88	0	77	36	23	5	34	1.79
31688289--31688313	13	1.9	13	100	0	50	60	0	24	16	1.36
31692108--31692149	18	2.3	18	92	8	68	57	0	0	42	0.99
31692574--31692601	5	5.6	5	100	0	56	42	21	17	17	1.89
31693531--31693559	14	2.1	14	100	0	58	37	13	13	34	1.85
31712116--31712149	3	11.3	3	100	0	68	67	0	0	32	0.91
31713029--31713092	32	2.0	33	84	3	85	34	9	12	43	1.75
31714170--31714201	2	16.0	2	100	0	64	50	0	0	50	1.00
31719521--31719557	17	2.2	17	90	0	56	51	0	29	18	1.47
31722584--31722619	17	2.1	17	89	0	54	63	0	16	19	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31725808--31725835	13	2.2	13	100	0	56	46	0	0	53	1.00
31726400--31726428	2	14.5	2	100	0	58	51	0	48	0	1.00
31729757--31729785	2	14.5	2	100	0	58	48	0	0	51	1.00
31730176--31730217	20	2.2	20	86	4	59	45	11	0	42	1.41
31732963--31732990	12	2.3	12	100	0	56	25	21	10	42	1.85
31736054--31736081	2	14.0	2	100	0	56	0	50	0	50	1.00
31742842--31742894	22	2.4	21	82	14	63	62	3	1	32	1.24
31748390--31748432	13	3.3	13	78	12	52	25	6	2	65	1.30
31759760--31759813	19	2.8	20	86	8	76	16	16	18	48	1.82
31761846--31761914	36	1.9	36	87	0	102	21	26	15	36	1.94
31762899--31762941	21	2.0	22	86	4	61	32	23	2	41	1.67
31768368--31768445	19	4.1	19	79	12	79	32	1	2	64	1.15
31768369--31768445	9	8.1	10	72	22	60	32	1	2	63	1.16
31768369--31768445	39	2.0	37	85	9	102	32	1	2	63	1.16
31768368--31768445	10	8.1	9	74	20	61	32	1	2	64	1.15
31768373--31768454	10	8.1	10	71	21	55	35	2	2	59	1.24
31768369--31768462	40	2.4	40	80	10	104	32	2	3	61	1.23
31768377--31768454	19	3.9	20	73	18	65	34	2	2	60	1.24
31771857--31771919	20	3.2	20	82	13	85	73	0	4	22	1.02
31771796--31771928	10	13.3	10	71	13	69	64	1	3	30	1.20
31772290--31772358	17	3.8	18	69	17	54	28	1	0	69	0.97
31772376--31772573	89	2.3	89	81	4	215	32	8	19	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772413--31772593	89	2.1	89	83	4	224	34	7	18	38	1.80
31773495--31773609	10	11.6	10	69	10	76	29	4	2	63	1.27
31773495--31773559	30	2.2	29	89	5	96	29	1	3	66	1.16
31773786--31774122	89	3.8	87	82	8	373	29	7	19	43	1.78
31773786--31774122	176	1.9	174	81	6	410	29	7	19	43	1.78
31782602--31782635	12	2.8	12	86	0	50	58	0	38	2	1.13
31782960--31783008	24	2.0	26	84	15	68	26	16	10	46	1.78
31787803--31787838	18	1.9	19	94	5	65	55	5	0	38	1.23
31787826--31787871	24	1.9	24	90	0	74	41	2	4	52	1.33
31787824--31787877	24	2.2	24	83	0	72	37	1	3	57	1.27
31790204--31790249	24	2.0	22	83	8	56	28	2	2	67	1.14
31790573--31790652	41	2.0	41	90	5	126	21	3	11	63	1.42
31790629--31790654	12	2.2	12	100	0	52	23	0	7	69	1.14
31790649--31790696	26	1.9	24	87	8	69	39	2	4	54	1.32
31790981--31791178	91	2.2	92	95	0	353	44	9	5	39	1.60
31793643--31793681	18	2.2	18	90	0	60	30	12	10	46	1.75
31793995--31794034	13	3.0	13	82	7	53	52	0	0	47	1.00
31793995--31794036	14	3.1	14	82	3	59	52	0	0	47	1.00
31795730--31795964	116	2.0	115	85	0	317	35	27	11	25	1.90
31796475--31796558	36	2.3	37	83	2	98	19	25	13	42	1.86
31798598--31798667	18	3.9	18	85	7	97	38	10	10	41	1.72
31801945--31802077	70	1.9	67	85	7	178	42	12	13	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31804362--31804393	16	2.0	16	100	0	64	31	6	25	37	1.81
31804458--31804636	39	4.6	39	80	2	153	37	21	17	22	1.94
31807741--31807793	22	2.5	20	74	14	54	58	5	1	33	1.32
31808996--31809079	44	1.9	44	92	0	141	17	13	16	52	1.75
31813728--31813767	19	2.0	20	90	4	64	67	7	5	20	1.34
31816580--31816784	103	2.0	103	97	0	383	28	30	10	30	1.90
31819349--31819393	6	7.7	6	80	5	56	48	0	2	48	1.13
31819349--31819395	23	2.0	23	84	8	60	51	0	2	46	1.13
31819394--31819423	14	2.1	14	93	0	51	50	20	6	23	1.71
31820158--31820220	3	21.0	3	80	6	65	58	1	0	39	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135