genome.fa.s2.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  83  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25614256--25614320	6	10.8	6	74	12	62	52	0	4	43	1.22
25614257--25614331	17	4.6	17	80	9	84	53	1	4	41	1.28
25614257--25614315	31	1.9	31	92	0	100	52	0	5	42	1.23
25615231--25615268	2	19.0	2	100	0	76	50	0	0	50	1.00
25619091--25619139	25	2.0	25	88	8	73	51	6	20	22	1.69
25624686--25624719	14	2.5	14	90	4	52	41	0	0	58	0.98
25625660--25625711	24	2.2	24	83	6	72	28	13	11	46	1.78
25628132--25628206	29	2.6	30	83	8	84	64	4	12	20	1.43
25628329--25628416	28	3.2	27	76	6	97	56	1	12	29	1.43
25628314--25628462	57	2.6	56	82	6	158	55	2	12	29	1.48
25628347--25628472	57	2.2	57	82	4	164	57	1	11	29	1.44
25629338--25629372	16	2.2	16	89	0	52	25	0	2	71	1.00
25630490--25630798	46	7.2	44	80	10	272	23	16	26	33	1.96
25630645--25630788	40	3.6	40	84	8	143	26	12	29	31	1.93
25630692--25631031	42	8.4	41	81	6	374	23	15	30	30	1.95
25630692--25631032	83	4.2	79	83	6	418	23	15	30	30	1.95
25641328--25641734	42	9.9	42	80	5	456	25	16	27	29	1.97
25641327--25641735	81	5.0	81	81	8	427	25	16	27	29	1.97
25641328--25641734	123	3.3	123	84	2	512	25	16	27	29	1.97
25642582--25642625	20	2.2	20	84	8	54	40	6	25	27	1.80
25642903--25642962	13	4.4	13	76	21	52	0	23	0	76	0.78
25642903--25642947	22	2.1	21	92	8	74	0	22	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25642903--25642961	20	2.9	21	76	19	63	0	23	0	76	0.79
25647361--25647559	29	7.0	28	69	14	104	56	0	14	28	1.42
25647395--25647473	26	3.0	26	76	10	88	62	0	12	25	1.31
25647357--25647511	53	2.8	54	84	9	179	57	0	12	29	1.41
25647396--25647481	27	3.2	26	76	9	93	62	0	12	24	1.30
25647409--25647501	27	3.5	24	75	20	80	55	1	16	26	1.47
25648313--25648350	19	2.0	19	100	0	76	21	31	26	21	1.98
25660997--25661069	37	2.0	37	89	5	112	32	6	15	45	1.72
25661512--25661606	20	4.8	20	70	16	63	45	12	6	35	1.68
25669430--25669516	38	2.3	38	86	4	113	49	9	5	35	1.59
25670828--25670892	20	3.2	20	77	0	76	41	20	27	10	1.85
25670813--25670957	40	3.6	40	81	4	134	35	19	29	15	1.92
25674959--25675004	16	2.9	16	75	18	51	54	0	30	15	1.41
25683741--25683790	12	4.2	12	81	0	55	62	0	36	2	1.07
25694588--25694627	21	1.9	21	100	0	80	37	15	7	40	1.75
25702105--25702143	17	2.2	19	86	9	55	64	0	35	0	0.94
25702539--25702582	17	2.6	17	82	7	54	15	13	11	59	1.62
25703167--25703216	19	2.6	20	81	15	61	74	2	20	4	1.08
25703553--25703577	13	1.9	13	100	0	50	24	16	12	48	1.79
25714372--25714401	16	1.9	15	93	6	51	50	0	33	16	1.46
25717453--25717495	12	3.6	12	75	12	52	53	13	0	32	1.41
25717448--25717498	24	2.1	24	100	0	102	49	11	0	39	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25721532--25721608	25	3.1	25	86	0	91	25	20	22	31	1.98
25722981--25723109	55	2.3	55	86	0	168	29	16	25	28	1.97
25724701--25724738	19	2.0	19	85	10	51	21	13	5	60	1.52
25726322--25726401	28	2.7	30	77	11	85	16	17	28	37	1.91
25727336--25727434	49	2.0	49	94	0	171	43	11	18	27	1.83
25728288--25728337	22	2.3	22	89	0	73	22	22	28	28	1.99
25728863--25729445	291	2.0	291	99	0	1148	36	12	18	32	1.89
25730204--25730261	22	2.7	20	80	19	64	39	3	3	53	1.35
25734274--25734571	155	1.9	155	99	0	587	35	17	25	22	1.95
25736169--25736209	21	1.9	21	90	5	64	41	0	0	58	0.98
25737736--25737782	23	2.0	23	87	0	67	31	8	23	36	1.85
25737999--25738046	23	2.1	23	88	0	69	39	22	8	29	1.83
25742936--25743132	102	1.9	102	90	0	313	40	14	18	27	1.89
25766328--25766472	65	2.2	65	98	0	281	41	28	13	16	1.87
25774442--25774498	28	2.0	28	100	0	114	33	3	28	35	1.74
25779311--25779439	32	4.2	31	76	13	115	31	3	17	48	1.65
25779453--25779527	22	3.4	21	89	7	89	34	10	10	44	1.74
25779467--25779531	22	3.0	22	93	4	105	32	10	9	47	1.70
25789761--25789810	25	2.0	25	96	0	91	28	22	16	34	1.95
25812555--25812594	20	2.0	20	100	0	80	50	5	10	35	1.58
25812711--25812777	31	2.2	30	81	5	82	43	13	10	32	1.78
25823609--25823646	19	2.0	20	89	5	60	18	5	13	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25834837--25834861	9	2.8	9	100	0	50	68	8	12	12	1.40
25837165--25837203	12	3.2	12	81	0	51	41	20	5	33	1.74
25845280--25845320	14	2.9	14	85	3	55	41	4	19	34	1.73
25845336--25845407	33	2.2	32	85	7	92	27	4	16	51	1.63
25845778--25845825	15	2.9	16	74	20	53	43	0	2	54	1.12
25845863--25845906	13	3.3	14	84	9	56	50	0	0	50	1.00
25845865--25845904	14	2.8	16	78	21	52	47	0	0	52	1.00
25845915--25845970	18	2.9	19	73	26	55	50	0	1	48	1.11
25848515--25848560	19	2.4	19	96	0	83	23	21	28	26	1.99
25866848--25866901	21	2.6	21	88	5	74	27	11	27	33	1.91
25879828--25879859	12	2.7	12	90	0	55	65	0	34	0	0.93
25880883--25880942	10	6.0	10	75	13	61	76	0	18	5	0.96
25887063--25887119	22	2.6	22	78	15	57	56	5	7	31	1.49
25888323--25888397	24	3.1	24	96	0	132	26	22	22	28	1.99
25898719--25898762	18	2.5	18	85	3	54	59	11	11	18	1.61
25899159--25899213	12	4.3	12	78	13	65	1	38	0	60	1.08
25903542--25903576	18	2.0	18	88	5	54	2	25	0	71	1.00
25903542--25903591	17	2.9	18	77	19	54	4	30	0	66	1.10
25924226--25924271	24	1.9	24	90	0	74	30	8	8	52	1.62
25924282--25924348	33	2.2	30	82	12	75	38	0	0	61	0.96
25924284--25924348	32	2.0	31	85	5	85	40	0	0	60	0.97
25924282--25924345	24	2.9	23	86	13	82	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25924304--25924348	13	3.7	13	75	24	53	44	0	0	55	0.99
25928325--25928403	41	1.9	41	86	0	113	46	20	10	22	1.80
25929893--25930328	195	2.2	195	84	2	556	30	19	24	25	1.98
25931079--25931132	21	2.6	21	73	5	56	33	14	22	29	1.94
25934084--25934168	42	2.0	42	93	0	143	43	7	16	32	1.75
25935511--25935545	15	2.3	15	90	0	52	0	22	0	77	0.78
25950071--25950106	12	3.1	12	88	4	56	30	0	0	69	0.89
25950073--25950116	21	2.1	21	83	8	54	27	0	2	70	0.99
25952959--25953029	37	1.9	37	97	0	133	39	14	9	36	1.79
25955424--25955802	136	2.8	135	88	1	542	49	15	17	17	1.81
25956011--25956038	14	2.0	14	100	0	56	42	0	0	57	0.99
25967957--25967996	21	1.9	21	85	10	55	32	20	12	35	1.90
25975067--25975114	21	2.3	21	85	7	62	29	27	14	29	1.95
25977226--25977264	21	1.9	21	94	5	71	38	20	0	41	1.53
25979492--25979594	34	3.0	34	89	1	161	44	1	34	18	1.61
25982292--25982394	34	3.0	34	87	4	145	46	1	33	17	1.59
25982294--25982396	17	6.2	17	70	18	74	44	1	33	19	1.62
25986990--25987084	30	3.1	31	80	10	99	35	24	6	33	1.81
25997695--25997780	30	2.9	29	83	10	93	36	25	4	33	1.77
25997712--25997800	30	3.0	31	77	12	80	37	26	4	31	1.77
25997729--25997816	30	2.9	31	76	8	83	37	26	2	34	1.69
25998997--25999031	18	1.9	18	88	11	54	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26003622--26003869	41	6.1	41	88	0	347	29	20	33	16	1.95
26003926--26004003	34	2.3	36	84	13	119	56	5	0	38	1.22
26008339--26008561	86	2.6	86	85	4	290	26	14	28	30	1.95
26008347--26008561	43	5.0	43	84	2	261	26	14	27	30	1.95
26010269--26010327	25	2.4	25	82	0	73	23	28	10	37	1.88
26010577--26010731	58	2.7	58	76	8	138	29	23	14	33	1.94
26011999--26012024	7	3.7	7	100	0	52	73	0	0	26	0.84
26027415--26027510	17	5.6	17	81	1	102	33	1	7	58	1.33
26027415--26027513	34	2.9	34	83	3	119	35	1	7	56	1.33
26028229--26028295	21	3.2	21	79	8	75	52	2	5	38	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135