genome.fa.s2.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  24  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6537794--6538293	162	3.1	162	94	0	892	44	12	17	26	1.84
6539887--6539927	17	2.4	17	91	4	64	53	0	2	43	1.13
6540196--6540901	76	9.2	76	92	1	1097	32	16	15	34	1.91
6540196--6540901	153	4.6	153	92	1	1110	32	16	15	34	1.91
6540199--6540901	229	3.1	229	93	1	1174	32	16	15	34	1.91
6540810--6540985	92	1.9	90	86	4	246	27	17	17	37	1.92
6550218--6550548	29	11.3	29	63	23	106	35	2	28	32	1.72
6550192--6550607	59	7.1	57	82	5	451	35	3	28	32	1.73
6550192--6550607	118	3.5	117	82	3	498	35	3	28	32	1.73
6550209--6550604	175	2.3	175	88	4	575	36	3	28	32	1.72
6550211--6550618	30	13.9	28	68	21	162	36	3	28	31	1.74
6550678--6551177	162	3.1	162	94	0	892	43	12	17	26	1.84
6552788--6552828	17	2.4	17	91	4	64	53	0	2	43	1.13
6554468--6554684	101	2.1	101	98	0	416	35	9	6	47	1.63
6556300--6556462	87	1.9	87	92	0	272	15	7	47	28	1.74
6556383--6556671	51	5.7	51	90	0	362	15	7	46	29	1.74
6556396--6556853	51	9.9	45	76	15	225	15	8	46	29	1.74
6556726--6556804	36	2.2	36	86	0	104	11	7	49	31	1.67
6556680--6556849	81	2.1	81	85	6	229	13	7	48	30	1.70
6556762--6556856	45	2.1	45	90	7	149	14	7	47	30	1.72
6556543--6556943	213	1.9	217	85	6	564	16	7	45	30	1.75
6558902--6558949	22	2.1	22	88	3	69	72	4	8	14	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6559765--6559807	19	2.3	19	84	8	52	58	4	0	37	1.19
6560380--6560576	104	1.9	103	85	3	270	26	24	12	36	1.91
6560380--6560610	104	2.2	104	82	4	261	25	22	11	40	1.87
6561257--6561312	4	13.8	4	78	17	62	78	0	3	17	0.89
6565353--6565392	21	1.9	21	89	0	62	27	17	12	42	1.85
6566943--6566990	22	2.1	22	88	3	69	72	4	8	14	1.23
6567806--6567848	19	2.3	19	84	8	52	58	4	0	37	1.19
6567869--6567897	5	5.8	5	100	0	58	82	0	0	17	0.66
6570617--6570658	17	2.5	17	84	3	50	54	2	0	42	1.13
6571948--6571980	11	3.0	11	100	0	66	27	0	0	72	0.85
6572155--6572205	25	2.0	25	81	7	59	37	9	3	49	1.55
6576193--6576254	5	11.8	5	80	16	72	82	0	17	0	0.67
6576193--6576268	10	7.3	10	74	14	73	81	0	18	0	0.69
6576193--6576268	15	4.9	15	81	13	91	81	0	18	0	0.69
6577857--6577920	29	2.2	28	78	10	67	26	7	32	32	1.85
6577909--6577938	16	1.9	16	93	6	53	33	3	26	36	1.73
6577977--6578048	29	2.5	30	82	13	80	37	5	16	40	1.72
6578025--6578083	30	2.0	30	93	0	100	37	3	25	33	1.73
6578089--6578220	30	4.5	30	75	6	126	37	5	20	36	1.75
6578089--6578220	58	2.2	60	86	5	189	37	5	20	36	1.75
6579845--6579902	10	5.8	10	74	22	59	53	1	0	44	1.10
6579847--6579908	23	3.0	23	71	24	73	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6579859--6579937	17	4.7	17	82	3	97	51	2	0	45	1.14
6581419--6581661	49	4.9	50	79	4	260	33	16	29	20	1.95
6581384--6581720	50	6.8	49	76	4	266	33	16	29	19	1.95
6581384--6581720	99	3.4	99	85	2	426	33	16	29	19	1.95
6581747--6582211	49	9.5	49	71	6	235	35	17	27	19	1.94
6581729--6582254	98	5.4	98	87	0	658	35	17	26	19	1.94
6581739--6582323	196	3.0	196	83	2	602	35	16	26	20	1.94
6582511--6582587	40	1.9	40	91	0	127	29	27	16	25	1.97
6583072--6583115	16	2.6	17	85	7	54	56	6	0	36	1.26
6583632--6583656	3	8.3	3	100	0	50	68	0	0	32	0.90
6583970--6584002	2	16.5	2	100	0	66	51	0	0	48	1.00
6584760--6585027	99	2.7	96	80	10	294	26	12	3	57	1.51
6584894--6584955	31	2.0	32	87	3	90	27	8	0	64	1.21
6584760--6585044	98	2.9	96	77	10	251	26	12	3	56	1.52
6586695--6586746	27	1.9	27	100	0	104	42	11	23	23	1.86
6587203--6587347	70	2.1	71	93	1	247	40	15	15	27	1.88
6587503--6587592	47	1.9	47	93	2	155	32	1	18	47	1.56
6588651--6588752	51	2.1	45	70	18	71	12	7	50	29	1.69
6588700--6588917	45	5.4	39	76	10	120	14	7	48	29	1.71
6588777--6589054	45	6.1	45	85	5	362	11	6	50	31	1.64
6588615--6589031	126	3.2	126	82	8	416	13	7	47	30	1.71
6588775--6589054	138	2.0	138	90	1	436	11	6	51	31	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6588777--6589054	90	3.1	90	90	3	421	11	6	50	31	1.64
6588813--6589096	138	2.1	136	84	5	365	13	6	50	30	1.67
6591247--6591286	17	2.4	17	95	0	71	40	0	2	57	1.12
6592349--6592541	78	2.5	78	81	3	210	24	31	18	25	1.98
6592482--6592605	63	2.0	63	85	3	169	20	25	25	27	1.99
6592570--6593126	39	14.3	39	71	13	317	23	31	19	24	1.98
6592407--6592669	141	1.9	141	82	1	330	22	29	22	25	1.99
6592609--6593124	78	6.6	78	85	2	660	23	31	19	24	1.98
6592570--6593126	117	4.8	116	74	13	439	23	31	19	24	1.98
6593560--6593598	16	2.4	17	91	4	62	41	0	2	56	1.13
6595270--6595625	29	12.1	30	75	9	206	38	25	3	33	1.72
6595382--6595459	30	2.6	30	87	2	111	37	20	1	41	1.61
6595583--6595647	29	2.2	30	83	2	78	36	18	4	40	1.71
6596466--6596555	47	1.9	46	93	2	153	32	1	18	47	1.56
6597457--6597733	30	9.4	30	81	9	227	35	3	23	38	1.72
6597452--6597733	60	4.8	59	80	7	254	34	3	23	38	1.72
6597480--6597722	90	2.7	89	83	6	296	34	3	23	38	1.73
6599498--6599581	6	14.3	6	74	18	70	57	0	2	40	1.12
6599502--6599581	11	6.9	11	72	16	54	57	0	2	40	1.12
6599498--6599573	17	4.6	17	80	11	95	56	0	2	40	1.13
6599763--6600586	91	9.0	91	88	1	959	28	18	19	33	1.96
6599763--6600586	183	4.5	182	89	0	1020	28	18	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6599763--6600582	274	3.0	274	86	1	1090	28	18	19	32	1.96
6611344--6611378	18	1.9	18	88	0	52	31	8	17	42	1.79
6612424--6612485	6	10.3	6	76	13	65	56	0	1	41	1.09
6612428--6612485	11	4.9	11	78	15	62	56	0	1	41	1.09
6613082--6613336	48	5.6	48	71	17	193	16	7	47	29	1.74
6613046--6613221	84	2.1	84	90	2	273	16	6	47	28	1.72
6613165--6613307	45	3.1	45	83	7	173	12	7	49	30	1.68
6617324--6617648	51	6.7	51	73	12	254	16	7	46	30	1.74
6617417--6617833	51	9.1	45	73	18	287	14	8	46	30	1.74
6617328--6617490	87	1.9	87	89	0	245	15	7	48	28	1.72
6617703--6617781	36	2.2	36	86	0	104	11	7	49	31	1.67
6617657--6617826	81	2.1	82	86	6	240	14	8	46	31	1.73
6621341--6621377	3	12.3	3	100	0	74	32	0	0	67	0.91
6621580--6621621	17	2.5	17	84	3	50	54	4	0	40	1.21
6621664--6621731	35	1.9	36	88	8	104	44	42	1	11	1.50
6621655--6621731	35	2.2	35	84	9	95	46	40	1	11	1.48
6622190--6622234	3	15.3	3	95	4	83	66	0	0	33	0.92
6626937--6627358	78	5.4	77	79	7	408	27	31	17	24	1.97
6626915--6627358	156	2.9	154	81	6	484	26	31	17	24	1.97
6627071--6627358	39	7.4	39	70	9	187	26	32	18	23	1.97
6628364--6628605	30	8.1	30	80	7	228	36	27	2	34	1.69
6628390--6628605	89	2.4	89	80	6	231	35	27	2	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6630027--6630171	70	2.1	71	92	1	238	40	15	15	28	1.88
6631476--6631574	51	1.9	51	87	4	146	14	8	50	27	1.70
6631452--6631690	120	2.0	114	88	4	343	16	7	45	29	1.76
6631602--6631879	45	6.1	45	85	5	344	11	6	50	31	1.64
6631600--6631879	138	2.0	138	90	1	436	11	6	50	31	1.63
6631602--6631879	90	3.1	90	88	3	403	11	6	50	31	1.64
6631638--6631921	138	2.1	136	84	5	365	13	6	49	30	1.66
6634073--6634112	17	2.4	17	95	0	71	40	0	2	57	1.12
6637765--6637852	45	2.0	45	86	0	122	12	6	48	31	1.67
6637687--6637987	87	3.5	86	75	14	300	16	7	44	30	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135