genome.fa.s2.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  120  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36145191--36145262	2	36.0	2	88	0	108	44	0	55	0	0.99
36146089--36146137	17	3.0	16	85	11	64	65	0	0	34	0.93
36146083--36146131	19	2.7	19	81	18	68	59	0	2	38	1.09
36146348--36146420	25	2.8	26	69	19	71	47	0	6	45	1.29
36146334--36146413	26	3.1	26	67	16	76	45	1	5	48	1.32
36146958--36147119	82	2.0	82	83	2	209	42	2	7	47	1.44
36149182--36149321	74	1.9	74	90	0	226	43	7	12	36	1.71
36155682--36155709	14	2.0	14	100	0	56	42	28	0	28	1.56
36155641--36155876	118	2.0	118	97	0	445	39	29	3	27	1.73
36157661--36157685	3	8.3	3	100	0	50	0	36	0	64	0.94
36163411--36163643	113	2.1	113	100	0	466	30	14	22	31	1.94
36167328--36167352	2	12.5	2	100	0	50	48	0	0	52	1.00
36167531--36167556	12	2.2	12	100	0	52	23	7	30	38	1.83
36183457--36183499	11	3.8	11	80	17	52	65	0	2	32	1.06
36183464--36183530	27	2.5	26	81	11	73	58	1	2	37	1.23
36200024--36200075	20	2.6	19	72	19	52	55	11	5	26	1.58
36202141--36202173	18	1.9	17	88	11	50	48	0	9	42	1.35
36203482--36203539	29	2.0	29	86	0	80	39	17	20	22	1.92
36203597--36203741	40	3.6	40	82	1	148	24	15	22	37	1.93
36204238--36204342	55	1.9	55	92	0	174	28	37	15	19	1.92
36206158--36206214	29	1.9	30	85	3	80	52	12	3	31	1.55
36212929--36212967	17	2.3	17	90	0	60	15	12	25	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36213009--36213057	23	2.2	22	82	10	55	63	8	10	18	1.50
36216116--36216140	13	1.9	13	100	0	50	68	0	0	32	0.90
36222696--36222722	6	4.5	6	100	0	54	18	51	0	29	1.46
36234462--36234490	13	2.1	14	93	6	51	75	0	24	0	0.80
36238032--36238086	18	2.9	18	82	17	76	40	1	0	58	1.09
36257590--36257618	14	2.1	14	100	0	58	51	0	13	34	1.42
36273172--36273216	16	2.9	16	87	6	58	55	4	13	26	1.57
36273183--36273233	14	3.6	14	81	7	59	64	5	7	21	1.41
36273356--36273635	29	9.8	29	68	15	86	38	2	24	35	1.67
36273365--36273648	58	5.0	56	73	15	197	38	2	24	34	1.68
36273374--36273657	57	4.9	56	74	14	213	37	2	25	34	1.69
36277131--36277179	22	2.2	22	88	0	71	59	10	16	14	1.61
36283861--36283924	14	4.5	14	67	18	51	64	4	4	26	1.33
36283848--36283937	43	2.1	42	93	4	162	58	6	5	28	1.46
36299169--36299197	11	2.5	12	94	5	51	27	13	6	51	1.66
36301609--36301750	69	2.1	69	94	0	248	35	22	11	30	1.89
36303517--36303605	31	2.9	31	78	6	74	30	12	7	49	1.69
36303533--36303605	31	2.4	31	81	2	94	32	12	8	46	1.71
36303827--36303999	59	2.9	59	82	5	186	48	10	16	24	1.77
36304540--36304721	59	3.1	58	81	6	231	50	7	18	23	1.73
36304778--36305012	11	21.0	11	67	19	73	65	7	0	26	1.19
36304777--36304852	27	2.9	27	73	19	70	71	5	0	23	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36304803--36304953	43	3.3	43	84	12	194	66	7	0	25	1.19
36304826--36305062	50	4.9	48	84	12	304	64	8	0	27	1.22
36304896--36305065	53	3.2	52	82	13	213	64	8	0	27	1.21
36304777--36305061	146	2.0	146	96	1	527	65	8	0	26	1.20
36304959--36305061	20	4.4	23	75	12	104	64	7	0	28	1.21
36305039--36305103	30	2.1	32	83	13	82	67	12	0	20	1.22
36304825--36305093	103	2.7	102	80	11	258	65	8	0	26	1.22
36305323--36305391	21	3.3	21	66	8	59	18	5	11	63	1.47
36305396--36305607	93	2.2	92	80	11	241	39	13	8	38	1.76
36306043--36306090	19	2.6	18	81	18	55	0	39	0	60	0.97
36309297--36309324	5	5.6	5	100	0	56	0	0	57	42	0.99
36324682--36324729	26	1.9	25	87	8	71	54	4	2	39	1.32
36337432--36337474	22	2.0	22	81	9	52	65	0	6	27	1.18
36337473--36337511	20	2.0	20	90	5	62	58	2	5	33	1.33
36337480--36337526	20	2.2	20	85	7	58	59	0	4	36	1.17
36337568--36337634	32	2.1	32	83	5	82	53	1	8	35	1.41
36337600--36337639	21	1.9	21	90	10	64	52	0	7	40	1.30
36341864--36341935	35	2.1	35	97	0	135	27	19	4	48	1.67
36347656--36347681	6	4.3	6	100	0	52	69	0	15	15	1.20
36353856--36353901	23	2.0	22	84	12	58	39	0	2	58	1.10
36355182--36355252	22	3.3	20	83	13	88	8	5	18	67	1.37
36355191--36355253	22	2.8	23	85	9	103	9	4	15	69	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36355277--36355359	12	7.2	12	74	10	66	7	6	19	67	1.36
36355304--36355366	12	5.3	12	80	1	56	6	7	22	63	1.44
36355494--36355541	23	2.0	25	92	8	82	27	0	4	68	1.07
36356078--36356128	26	2.0	26	92	0	84	33	25	3	37	1.74
36361282--36361332	9	5.6	9	79	4	57	64	0	1	33	1.05
36363138--36363179	21	2.0	21	86	9	59	59	4	0	35	1.19
36369948--36370009	31	2.0	31	90	0	97	56	3	6	33	1.41
36388548--36388573	6	4.3	6	100	0	52	30	0	53	15	1.42
36397590--36397621	4	8.0	4	100	0	64	50	0	0	50	1.00
36402052--36402117	29	2.2	30	91	5	107	42	0	7	50	1.31
36402096--36402148	22	2.3	23	75	12	65	49	0	3	47	1.19
36402280--36402306	3	9.0	3	100	0	54	66	0	0	33	0.92
36402576--36402600	3	8.3	3	100	0	50	68	0	32	0	0.90
36409240--36409280	5	8.2	5	97	0	73	0	60	0	39	0.96
36412057--36412151	49	2.0	48	81	6	111	65	5	0	29	1.14
36412187--36412229	21	2.0	21	86	0	59	62	4	4	27	1.35
36412226--36412284	20	2.9	21	73	14	52	66	20	3	10	1.36
36412283--36412334	23	2.3	23	86	3	70	65	17	7	9	1.45
36414797--36414854	30	1.9	31	92	3	100	27	3	10	58	1.47
36418614--36418683	18	3.9	18	87	7	106	40	10	11	38	1.75
36419115--36419365	72	3.5	71	85	5	339	23	4	15	56	1.59
36422071--36422108	20	1.9	20	94	0	67	36	5	2	55	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36428779--36428819	15	2.6	16	75	17	50	75	2	4	17	1.08
36429635--36429665	4	7.8	4	100	0	62	25	22	0	51	1.48
36432864--36432907	2	22.0	2	90	0	70	54	0	0	45	0.99
36435266--36435311	15	3.2	15	87	6	69	67	2	0	30	1.03
36441032--36441065	16	2.2	15	94	5	59	52	11	8	26	1.67
36444242--36444393	75	2.1	72	83	6	189	30	19	16	33	1.94
36445119--36445181	17	3.6	17	70	18	58	52	0	0	47	1.00
36447799--36447828	15	2.0	15	93	0	51	56	6	0	36	1.26
36451516--36451561	14	2.8	17	75	21	53	50	0	0	50	1.00
36455141--36455182	17	2.5	17	92	3	68	38	7	21	33	1.81
36457931--36458019	23	3.8	23	78	10	83	32	12	14	40	1.83
36457984--36458030	23	2.0	23	84	8	60	40	10	14	34	1.81
36459941--36460010	15	4.7	15	73	15	56	28	7	4	60	1.43
36470570--36470656	41	2.1	42	82	6	106	56	8	5	29	1.52
36473253--36473277	13	1.9	13	100	0	50	56	4	0	40	1.18
36478485--36478568	28	2.9	30	79	13	102	32	8	9	50	1.65
36478543--36478585	20	2.2	20	84	12	54	27	9	13	48	1.73
36480207--36480256	21	2.4	21	82	0	64	28	22	18	32	1.97
36481574--36481613	2	20.0	2	100	0	80	50	0	0	50	1.00
36481925--36482279	175	2.0	175	93	0	602	34	16	9	38	1.82
36486134--36486171	20	1.9	20	88	0	58	39	0	28	31	1.57
36486910--36486948	19	2.1	18	85	4	51	30	12	0	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36487932--36487959	2	14.0	2	100	0	56	50	0	0	50	1.00
36493472--36493512	19	2.2	19	100	0	82	48	4	14	31	1.65
36494408--36494477	29	2.3	29	85	4	86	38	11	12	37	1.80
36494430--36494487	29	2.0	28	86	6	80	34	10	13	41	1.79
36494430--36494518	31	3.0	30	79	11	94	31	11	15	41	1.83
36495240--36495270	15	2.1	15	93	0	53	32	0	0	67	0.91
36502147--36502205	29	2.0	30	90	9	95	49	8	6	35	1.60
36508488--36508551	24	2.6	24	80	9	69	51	4	0	43	1.22
36508491--36508551	25	2.5	25	78	2	61	54	3	0	42	1.17
36508794--36508826	17	1.9	17	88	11	50	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135