genome.fa.s2.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  77  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23381139--23381454	113	2.8	113	91	1	501	30	20	11	37	1.89
23381615--23381835	113	2.0	113	88	1	327	32	18	10	38	1.86
23381234--23382339	381	2.9	381	97	0	2086	33	18	14	33	1.91
23381996--23382216	113	2.0	113	89	1	345	31	19	11	38	1.87
23382641--23383069	50	8.6	50	73	5	296	36	16	30	16	1.91
23382638--23382906	99	2.7	99	83	2	351	36	16	29	16	1.91
23382731--23383069	149	2.3	148	81	2	385	36	16	30	16	1.92
23382887--23383106	99	2.2	100	84	2	282	35	14	32	18	1.90
23382641--23383109	248	1.9	248	85	1	645	36	15	30	17	1.91
23385221--23385290	30	2.3	30	85	9	90	40	25	1	32	1.65
23395110--23395175	27	2.4	27	78	9	71	13	15	36	34	1.87
23395733--23395766	17	2.1	16	94	5	59	29	29	8	32	1.87
23396563--23396641	24	3.4	23	76	13	81	27	8	12	50	1.70
23396599--23396644	22	2.1	22	91	0	74	28	6	10	54	1.60
23405945--23405988	18	2.4	18	81	7	54	59	2	6	31	1.36
23406112--23406207	30	3.2	29	76	7	95	39	6	18	35	1.76
23406112--23406188	29	2.6	30	79	6	86	42	6	18	32	1.75
23406115--23406197	29	2.9	29	72	13	80	40	7	20	31	1.79
23408023--23408135	42	2.7	42	91	2	174	27	21	23	27	1.99
23408421--23408646	99	2.3	99	82	3	276	19	32	14	34	1.92
23408500--23408905	50	8.2	50	74	8	292	18	30	16	34	1.93
23408471--23408806	149	2.3	149	81	3	388	18	30	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23408620--23408908	99	2.9	98	81	6	359	17	31	16	34	1.92
23408471--23408905	149	2.9	149	79	4	360	18	31	15	34	1.92
23409851--23409922	6	11.8	6	78	12	58	2	16	0	80	0.83
23409848--23409891	17	2.6	17	82	7	54	0	18	0	81	0.68
23409851--23409900	25	2.0	25	92	0	82	0	20	0	80	0.72
23409849--23409910	19	3.2	18	82	13	70	0	19	0	80	0.71
23410348--23410514	81	2.1	81	88	2	246	28	16	16	38	1.90
23415232--23415407	30	6.0	28	71	18	99	43	3	19	33	1.69
23416557--23416581	9	2.8	9	100	0	50	12	16	36	36	1.85
23429271--23429431	81	2.0	81	93	0	277	19	18	16	45	1.86
23433486--23433552	18	3.7	18	74	4	64	35	22	17	23	1.95
23440100--23440147	17	2.8	17	77	0	51	22	16	8	52	1.71
23447045--23447079	11	3.2	11	91	0	52	37	8	0	54	1.31
23449522--23449605	20	4.2	20	73	10	73	33	7	11	47	1.68
23449078--23450127	522	2.0	523	97	0	1967	32	12	18	36	1.88
23450044--23450128	20	4.2	20	73	10	75	32	7	11	48	1.67
23452234--23452272	20	2.0	20	85	10	53	35	5	10	48	1.59
23456633--23456691	29	2.0	30	86	3	84	27	10	15	47	1.77
23456880--23456946	31	2.3	27	78	14	71	41	13	8	35	1.76
23470233--23470264	14	2.3	14	100	0	64	34	28	0	37	1.57
23474562--23474600	21	1.9	19	85	10	51	23	20	5	51	1.67
23476251--23476296	18	2.6	17	82	6	56	19	19	21	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23483023--23483066	23	2.0	22	86	4	61	52	2	0	45	1.13
23486370--23486394	12	2.1	12	100	0	50	0	32	0	68	0.90
23502033--23502080	5	9.2	5	86	4	60	77	0	4	18	0.93
23502033--23502081	16	3.2	14	81	13	53	75	0	4	20	0.96
23502036--23502080	22	2.1	21	88	12	65	77	0	4	17	0.92
23512426--23512650	42	5.3	43	80	6	142	26	25	10	37	1.89
23512471--23512660	42	4.4	43	82	5	215	26	24	10	38	1.87
23512471--23512650	86	2.1	86	86	4	247	26	25	10	37	1.88
23520342--23520375	17	2.0	17	88	11	52	5	17	0	76	0.98
23521690--23521758	27	2.6	27	81	9	79	26	28	10	34	1.89
23521717--23521766	14	3.6	14	78	5	57	28	28	8	36	1.85
23522238--23522304	29	2.2	30	82	10	75	28	2	25	43	1.69
23524691--23524747	23	2.5	24	77	8	64	28	15	28	28	1.96
23528202--23528371	85	2.0	83	90	4	270	37	12	15	33	1.86
23529554--23529591	18	2.1	18	85	9	51	31	7	10	50	1.66
23530941--23530987	24	2.0	24	87	8	69	42	2	0	55	1.12
23531159--23531196	15	2.4	16	82	8	51	31	0	0	68	0.90
23578002--23578050	21	2.3	21	75	0	53	42	34	10	12	1.76
23584301--23584772	236	2.0	236	100	0	944	27	25	12	35	1.91
23604888--23604935	17	2.8	16	78	12	51	52	8	18	20	1.71
23616725--23616764	15	2.7	15	88	7	55	62	0	35	2	1.09
23616735--23616783	24	2.2	21	89	10	71	63	0	36	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23617116--23617169	17	3.1	17	78	2	54	18	18	14	48	1.82
23617725--23617763	18	2.2	18	95	0	69	38	0	7	53	1.30
23619730--23619769	20	2.0	20	85	4	55	50	10	0	40	1.36
23620566--23620623	21	2.6	22	84	10	66	36	24	18	20	1.95
23622113--23622229	58	2.0	58	100	0	234	41	15	3	39	1.64
23622796--23622826	13	2.3	14	94	5	55	38	19	6	35	1.77
23638033--23638079	12	3.4	14	77	14	53	44	0	0	55	0.99
23642930--23643011	41	2.0	41	92	0	137	24	8	24	42	1.82
23646730--23646764	18	1.9	18	88	0	52	42	8	0	48	1.33
23648625--23648725	41	2.5	41	88	0	157	36	5	16	40	1.73
23650288--23650327	16	2.6	16	88	7	57	55	0	2	42	1.13
23651102--23651581	244	2.0	240	91	2	773	33	6	16	43	1.74
23652054--23652234	88	2.1	88	94	0	317	30	13	20	34	1.92
23653854--23653914	28	2.1	30	82	11	74	19	8	11	60	1.55
23660825--23660883	26	2.3	26	84	0	73	23	27	11	37	1.90
23663606--23663762	47	3.3	47	90	0	242	35	21	14	29	1.92
23671922--23671955	17	2.1	17	88	5	52	50	14	0	35	1.44
23672284--23672377	38	2.5	37	77	8	100	28	26	15	28	1.96
23675554--23675595	16	2.7	15	85	10	50	80	0	14	4	0.86
23676968--23676998	16	1.9	16	93	0	53	22	16	0	61	1.34
23686024--23686098	18	4.4	17	74	15	57	72	2	4	21	1.14
23686314--23686356	23	1.9	22	81	13	52	67	9	2	20	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23687160--23687695	100	5.4	100	72	10	319	27	17	17	37	1.93
23687130--23687681	200	2.8	197	80	6	587	26	17	17	38	1.92
23687064--23687723	50	13.2	50	66	11	201	26	18	18	36	1.94
23687912--23687936	9	2.8	9	100	0	50	36	0	32	32	1.58
23693781--23693835	22	2.5	22	79	5	67	69	5	0	25	1.10
23694632--23694864	113	2.1	113	97	0	439	30	3	22	43	1.69
23699922--23699949	2	14.0	2	100	0	56	0	0	50	50	1.00
23700710--23700944	84	2.8	81	81	5	299	28	12	11	47	1.77
23700710--23700944	83	2.8	84	82	6	300	28	12	11	47	1.77
23702136--23702231	7	13.9	7	71	5	52	20	19	23	35	1.96
23702136--23702230	14	6.9	14	73	10	63	21	18	24	35	1.95
23707605--23707638	17	1.9	18	88	5	52	35	23	0	41	1.55
23711736--23711770	15	2.2	16	90	5	54	48	34	8	8	1.64
23711793--23711824	11	2.9	11	90	0	55	18	34	25	21	1.96
23711793--23711858	11	5.7	13	72	24	51	18	31	22	27	1.97
23717409--23717438	15	2.1	15	93	6	53	70	0	6	23	1.11
23718374--23718398	12	2.1	12	100	0	50	16	16	44	24	1.86
23721201--23721246	25	1.9	25	86	8	69	32	4	6	56	1.45
23722308--23722350	12	3.3	13	84	15	54	25	2	0	72	0.97
23722308--23722351	13	3.3	13	81	12	54	25	2	0	72	0.96
23727586--23727631	25	1.9	23	82	8	56	32	6	6	54	1.52
23728698--23728750	20	2.7	20	75	0	52	20	1	3	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23733117--23733141	10	2.5	10	100	0	50	68	0	8	24	1.16
23734124--23734163	17	2.3	18	87	12	57	75	0	12	12	1.06
23734124--23734167	18	2.4	19	92	3	72	75	0	13	11	1.06
23735218--23735263	25	1.9	23	86	8	65	34	4	4	56	1.39
23743253--23743291	6	6.5	6	87	0	51	23	30	0	46	1.53
23752438--23752475	20	1.9	20	94	0	67	28	0	5	65	1.14
23756306--23756355	23	2.2	23	82	7	57	52	4	2	42	1.31
23760315--23760388	19	3.9	19	76	15	73	63	6	1	28	1.28
23760315--23760381	20	3.6	19	81	13	68	65	5	1	26	1.24
23760351--23760388	17	2.1	19	85	9	53	60	10	2	26	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135