genome.fa.s2.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  109  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33102332--33102646	119	2.7	119	86	9	414	35	4	27	32	1.78
33102604--33102709	30	3.5	30	87	7	162	33	4	24	36	1.77
33102810--33103114	162	1.9	161	86	3	443	45	12	16	24	1.82
33102853--33103198	162	2.1	162	79	5	360	48	11	16	23	1.78
33104559--33104592	14	2.4	14	95	0	59	14	17	32	35	1.91
33104622--33104728	48	2.2	48	81	6	119	48	1	0	48	1.18
33104651--33104713	31	2.0	31	87	0	90	50	3	0	46	1.17
33104621--33104728	6	18.0	6	75	14	89	48	1	0	49	1.18
33104624--33104719	42	2.2	43	80	15	110	47	2	1	48	1.20
33106750--33107185	59	7.4	57	83	6	491	35	4	29	31	1.76
33106716--33107185	117	4.0	119	83	5	539	34	4	29	31	1.78
33106761--33107185	176	2.4	175	88	3	595	35	3	28	32	1.75
33107164--33107254	29	3.1	28	72	17	71	27	6	29	36	1.82
33109280--33109357	5	14.4	5	76	17	59	53	2	0	43	1.14
33109297--33109355	11	5.4	11	82	15	77	57	0	0	42	0.98
33109255--33109355	44	2.2	46	82	10	127	54	2	0	42	1.15
33109255--33109369	17	7.1	15	77	19	92	53	3	0	42	1.24
33109319--33109376	28	2.0	29	83	9	75	55	3	1	39	1.27
33109643--33109850	91	2.3	92	90	4	325	30	17	19	31	1.95
33109690--33109834	40	3.3	40	70	22	121	31	20	17	31	1.95
33109859--33110845	38	27.4	37	65	19	306	30	19	15	34	1.93
33109771--33110868	76	15.1	75	82	10	1209	30	19	15	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33109972--33110083	31	3.4	31	69	17	91	31	18	10	39	1.85
33109928--33110847	69	12.9	68	80	12	792	30	20	15	34	1.93
33123021--33123335	30	10.8	29	68	23	155	35	3	28	32	1.75
33122995--33123309	59	5.4	58	85	5	420	35	3	29	31	1.73
33123089--33123222	29	4.6	28	72	10	85	38	2	27	31	1.72
33122995--33123307	116	2.7	116	86	6	423	36	3	29	31	1.73
33125400--33125477	5	14.4	5	76	17	59	53	2	0	43	1.14
33125417--33125475	11	5.4	11	82	15	77	57	0	0	42	0.98
33125375--33125475	44	2.2	46	82	10	127	54	2	0	42	1.15
33125375--33125489	17	7.1	15	77	19	92	53	3	0	42	1.24
33126032--33126076	19	2.4	19	81	7	56	37	0	4	57	1.19
33130412--33130436	12	2.1	12	100	0	50	24	8	16	52	1.70
33131082--33131428	43	8.1	43	90	0	516	28	28	18	23	1.98
33135670--33135882	41	5.2	41	85	2	268	14	28	23	32	1.94
33135670--33135867	81	2.4	82	85	3	265	14	29	23	32	1.94
33137498--33137550	8	6.4	8	82	8	61	16	3	0	79	0.88
33137500--33137548	4	11.8	4	79	16	55	18	4	0	77	0.92
33138994--33139038	19	2.4	19	81	7	56	37	0	4	57	1.19
33147963--33148056	17	5.4	17	79	7	100	44	1	1	53	1.14
33147975--33148056	6	14.2	6	77	16	84	46	0	1	52	1.08
33147975--33148056	35	2.4	35	84	8	105	46	0	1	52	1.08
33148713--33148763	22	2.3	23	86	10	70	47	1	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33149894--33150151	30	8.8	28	76	11	180	37	22	4	35	1.74
33149894--33150151	58	4.4	59	81	5	283	37	22	4	35	1.74
33149901--33150189	29	10.0	29	73	13	195	35	23	4	35	1.75
33149895--33150127	117	2.0	117	89	5	355	37	22	3	36	1.70
33156403--33156463	28	2.1	29	79	11	72	24	8	29	37	1.84
33156418--33156521	28	3.6	28	73	10	93	37	5	23	33	1.79
33156392--33156688	146	2.0	147	84	3	393	39	8	21	30	1.82
33156736--33157233	29	17.1	29	75	9	354	34	4	24	36	1.75
33156740--33157234	88	5.7	87	77	8	400	34	4	23	36	1.75
33156740--33157196	117	3.9	115	82	7	514	35	3	23	37	1.73
33158360--33158388	15	1.9	15	100	0	58	37	6	0	55	1.27
33159176--33159242	16	4.1	16	77	11	64	49	7	1	41	1.40
33159217--33159263	17	2.8	17	83	3	51	57	10	0	31	1.33
33160530--33160649	50	2.4	50	85	0	150	34	18	25	21	1.96
33160562--33160659	50	2.0	50	89	4	153	36	18	23	21	1.95
33160727--33161040	39	8.0	39	71	6	222	30	24	19	25	1.98
33160728--33161020	79	3.7	79	80	2	320	30	24	20	25	1.98
33165410--33165489	24	3.3	24	80	0	97	23	22	13	40	1.90
33167175--33167215	7	5.9	7	100	0	82	14	26	0	58	1.37
33167724--33167753	13	2.2	14	94	5	53	40	10	16	33	1.82
33172040--33172072	16	2.0	17	88	5	50	57	0	0	42	0.98
33172782--33172845	33	2.0	33	84	9	87	17	10	7	64	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33173132--33173432	29	10.3	27	66	23	100	33	30	1	34	1.69
33173138--33173432	58	5.1	58	79	13	295	33	30	1	33	1.68
33173138--33173432	57	5.1	57	80	13	291	33	30	1	33	1.68
33173365--33173433	30	2.3	30	78	11	79	28	28	1	40	1.65
33180124--33180150	5	5.4	5	100	0	54	40	0	0	59	0.98
33183447--33183485	17	2.3	17	90	0	60	46	25	12	15	1.81
33193337--33193362	2	13.0	2	100	0	52	50	0	0	50	1.00
33202097--33202170	17	4.5	17	68	21	59	41	4	1	52	1.28
33202083--33202254	48	3.6	48	77	7	170	41	4	4	50	1.42
33205488--33205553	19	3.5	18	81	8	78	30	0	4	65	1.13
33205487--33205553	18	3.5	19	80	11	66	29	0	4	65	1.12
33205488--33205553	20	3.5	19	83	8	80	30	0	4	65	1.13
33205487--33205714	10	22.8	10	67	16	71	32	2	5	59	1.33
33205700--33205735	19	1.9	19	94	5	65	30	2	5	61	1.33
33212653--33212690	19	2.0	19	85	10	51	52	13	2	31	1.54
33221041--33221075	18	1.9	18	94	0	61	25	40	28	5	1.78
33223033--33223101	29	2.3	29	82	7	86	24	4	15	55	1.59
33229884--33229947	28	2.3	27	83	2	74	54	4	4	35	1.42
33229905--33229947	18	2.4	18	76	0	50	58	2	4	34	1.32
33229862--33229956	42	2.3	39	76	18	93	53	3	4	38	1.36
33236015--33236536	59	8.9	59	92	0	805	34	5	28	31	1.81
33236641--33236972	161	2.1	162	88	2	490	46	13	15	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33236712--33237057	161	2.2	160	80	6	371	49	13	15	22	1.78
33237563--33237595	15	2.2	15	100	0	66	45	18	18	18	1.86
33237796--33237847	23	2.3	21	81	12	59	30	11	5	51	1.61
33238525--33238590	6	11.0	6	74	22	59	51	0	3	45	1.16
33238528--33238558	14	2.1	15	94	5	55	54	0	0	45	0.99
33238534--33238590	17	3.6	16	84	9	73	54	0	3	42	1.17
33238536--33238609	27	2.6	26	79	16	67	51	4	2	41	1.35
33238874--33239472	68	8.8	68	89	2	869	27	19	18	34	1.95
33238903--33239472	137	4.2	135	93	1	899	27	19	18	34	1.95
33238874--33239472	205	2.9	203	88	3	869	27	19	18	34	1.95
33251434--33251984	59	9.3	59	89	1	755	36	5	26	31	1.80
33251987--33252025	7	5.6	7	100	0	78	15	0	38	46	1.46
33252945--33252996	23	2.3	21	81	12	59	30	11	5	51	1.61
33253675--33253751	6	13.0	6	73	21	65	50	0	3	45	1.20
33253657--33253751	17	5.8	17	78	10	90	47	0	6	46	1.28
33253680--33253751	31	2.2	32	87	4	101	52	0	4	43	1.20
33253694--33253742	23	2.3	20	89	10	71	51	0	4	44	1.20
33253697--33253770	27	2.6	26	79	16	67	51	4	2	41	1.35
33255449--33255473	9	2.8	9	100	0	50	52	0	0	48	1.00
33269834--33269859	6	4.3	6	100	0	52	30	0	34	34	1.58
33270634--33270695	19	3.2	20	79	9	74	59	3	0	37	1.13
33270643--33270724	26	3.1	26	76	11	69	53	3	0	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33271129--33271162	11	3.0	11	87	8	50	76	0	23	0	0.79
33271123--33271162	18	2.2	18	90	4	62	77	0	22	0	0.77
33275978--33276024	25	1.9	24	87	12	69	19	10	12	57	1.64
33276884--33276912	12	2.5	12	94	5	51	72	0	13	13	1.13
33276907--33276945	8	4.8	8	81	6	51	82	0	5	12	0.83
33276893--33276947	17	3.1	17	76	5	56	76	0	7	16	1.00
33280022--33280169	23	6.3	23	89	3	215	12	22	22	42	1.86
33284187--33284242	20	2.9	20	84	5	62	37	1	7	53	1.39
33290339--33290422	25	4.0	21	75	19	61	40	0	3	55	1.17
33290351--33290451	22	4.7	23	71	20	83	37	0	3	58	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135