genome.fa.s2.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  55  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15516624--15516671	21	2.3	21	88	0	78	56	10	29	4	1.52
15520980--15521020	15	2.7	15	79	20	50	60	7	14	17	1.55
15531347--15531463	34	3.4	35	81	6	125	17	9	33	39	1.82
15532406--15532445	21	1.9	21	90	10	64	27	22	40	10	1.86
15537080--15537137	28	2.0	30	83	9	77	34	1	10	53	1.45
15537151--15537186	18	2.1	17	89	5	54	36	0	0	63	0.94
15538926--15538962	18	2.1	18	89	0	56	43	8	37	10	1.69
15543235--15543275	15	2.7	15	79	20	50	60	7	14	17	1.55
15554667--15554706	21	1.9	21	90	10	64	27	22	40	10	1.86
15559925--15560028	55	1.9	55	91	0	172	7	23	22	47	1.77
15565595--15565652	30	2.0	29	83	10	73	68	5	3	22	1.24
15567743--15567788	24	2.0	23	83	12	58	6	4	30	58	1.43
15572403--15572436	17	1.9	18	94	5	61	14	8	0	76	1.01
15574940--15574971	13	2.4	14	85	15	50	62	0	34	3	1.11
15575171--15575227	17	3.4	17	66	9	53	26	12	7	54	1.63
15575420--15575508	43	2.1	43	97	0	169	26	26	12	33	1.92
15576545--15576614	35	2.0	35	88	0	104	27	21	20	31	1.98
15582589--15582618	13	2.2	14	94	5	53	66	0	30	3	1.07
15583623--15583657	17	2.1	17	89	10	54	17	14	14	54	1.72
15592398--15592427	15	1.9	16	93	6	53	43	13	23	20	1.86
15602906--15602952	21	2.2	21	92	0	76	21	27	23	27	1.99
15604035--15604082	13	3.7	12	79	17	51	18	6	0	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15612050--15612104	21	2.6	21	79	0	65	27	16	18	38	1.92
15619186--15619217	15	2.1	16	94	5	57	0	21	0	78	0.76
15632587--15632687	37	2.8	36	82	10	116	31	24	16	26	1.97
15632627--15632729	36	2.8	36	80	5	91	30	26	16	27	1.97
15632657--15632797	37	3.8	38	75	11	132	30	25	15	28	1.96
15634111--15634168	21	2.8	21	83	0	71	31	15	17	36	1.91
15634566--15634608	11	3.8	11	81	6	50	11	4	6	76	1.13
15634560--15634614	23	2.4	23	93	0	92	9	3	10	76	1.13
15640652--15640681	15	1.9	16	93	6	53	26	0	40	33	1.57
15656434--15656460	8	3.4	8	100	0	54	51	0	11	37	1.37
15658041--15658136	23	3.8	23	73	24	70	22	6	11	59	1.54
15658018--15658165	54	2.8	54	84	7	178	25	10	12	52	1.69
15658125--15658182	30	1.9	30	89	6	91	29	17	10	43	1.82
15658424--15658596	60	2.9	57	80	6	202	53	12	10	24	1.69
15658527--15658576	26	1.9	26	91	0	82	64	8	6	22	1.43
15659861--15659909	24	2.0	24	84	11	64	42	2	0	55	1.11
15660527--15660708	62	2.8	64	77	17	196	44	2	2	50	1.28
15661762--15662528	398	1.9	391	85	2	1043	26	14	24	34	1.94
15666962--15666993	14	2.3	14	94	0	55	50	15	0	34	1.45
15668414--15668461	15	3.2	14	77	11	51	29	4	0	66	1.10
15668383--15668461	30	2.5	30	82	12	86	29	5	1	64	1.22
15668420--15668945	187	2.9	181	76	13	520	33	10	7	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15676203--15676265	14	4.5	14	77	13	67	33	26	22	17	1.96
15676203--15676265	28	2.2	28	80	5	74	33	26	22	17	1.96
15676322--15676366	23	2.0	23	90	0	72	13	4	40	42	1.64
15676387--15676430	23	2.0	23	90	4	72	27	4	31	36	1.77
15683441--15683482	7	6.1	7	80	5	50	33	23	26	16	1.96
15683473--15683508	11	3.3	11	96	0	63	27	30	27	13	1.94
15698762--15698819	22	2.6	22	88	0	98	41	15	12	31	1.84
15709373--15709406	3	11.3	3	100	0	68	67	0	0	32	0.91
15709729--15709775	7	6.4	7	81	18	60	72	0	2	25	0.96
15709733--15709792	16	3.6	17	78	17	65	75	0	1	23	0.90
15720307--15720360	21	2.5	23	77	19	62	24	0	1	74	0.92
15720307--15720360	17	3.4	16	83	16	60	24	0	1	74	0.92
15729666--15730119	228	2.0	228	92	0	757	22	19	27	30	1.98
15729053--15731573	840	3.0	840	99	0	4988	24	20	24	29	1.99
15730506--15730959	228	2.0	228	92	0	757	22	19	27	30	1.98
15737972--15738003	16	2.0	16	100	0	64	62	6	0	31	1.20
15740185--15740212	12	2.3	12	100	0	56	0	7	0	92	0.37
15741529--15741585	18	3.2	18	84	0	78	14	28	10	47	1.76
15741557--15741599	21	2.0	21	81	0	50	11	25	6	55	1.60
15751068--15751151	13	6.5	13	80	0	87	42	2	25	29	1.67
15753186--15754203	514	2.0	513	92	1	1709	37	11	16	34	1.85
15759757--15759924	89	1.9	89	83	2	221	38	17	8	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15759997--15760045	17	2.8	17	81	6	53	71	0	6	22	1.08
15760033--15760074	19	2.2	19	91	0	66	59	2	4	33	1.31
15760030--15760097	10	6.9	10	72	9	50	61	1	4	32	1.24
15760013--15760149	9	15.0	9	67	19	61	62	2	4	29	1.29
15760014--15760148	56	2.4	55	83	8	157	62	2	4	29	1.29
15773214--15773267	20	2.7	20	85	0	63	29	9	31	29	1.88
15773542--15773722	52	3.5	52	94	0	299	27	14	22	35	1.93
15775648--15775672	13	1.9	13	100	0	50	28	8	24	40	1.83
15775751--15775837	24	3.6	24	90	0	129	50	10	13	25	1.73
15778523--15778706	52	3.5	52	89	0	287	26	13	22	38	1.91
15781007--15781031	13	1.9	13	100	0	50	28	8	24	40	1.83
15781110--15781172	24	2.6	24	80	5	74	50	11	14	23	1.74
15798415--15798529	41	2.8	41	83	0	158	24	23	19	33	1.97
15826301--15826362	29	2.1	29	88	8	90	51	0	0	48	1.00
15834591--15834645	26	2.1	26	90	10	85	18	9	12	60	1.58
15836874--15836956	35	2.4	36	85	4	116	36	20	18	25	1.95
15838124--15838215	46	2.0	46	93	4	159	41	8	9	40	1.69
15841601--15841679	37	2.1	37	100	0	158	41	15	29	13	1.85
15841608--15841669	21	3.2	21	60	21	53	45	12	29	12	1.80
15843767--15843817	7	7.6	7	83	16	54	62	0	35	1	1.06
15844638--15844686	21	2.3	20	83	10	62	48	2	2	46	1.25
15851180--15851241	31	2.0	31	84	6	81	45	9	6	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15852809--15852851	15	2.9	14	86	6	50	62	2	11	23	1.40
15852814--15852858	15	3.1	15	87	3	56	60	2	13	24	1.45
15852958--15853000	16	2.7	15	79	10	50	65	0	2	32	1.06
15853866--15854217	80	4.4	80	86	3	440	23	18	26	31	1.97
15856332--15856393	23	2.6	24	80	9	74	14	1	35	48	1.54
15856420--15856461	19	2.1	21	82	8	52	28	0	2	69	1.01
15856933--15857298	51	7.2	49	70	13	251	26	19	18	35	1.95
15856921--15857315	101	3.9	101	81	2	488	26	19	17	36	1.94
15856925--15857322	202	2.0	202	87	0	571	26	18	18	36	1.94
15858129--15858163	18	2.0	17	88	5	52	8	8	0	82	0.83
15866670--15866861	19	10.1	19	82	0	231	28	18	29	23	1.98
15870589--15870639	21	2.4	21	80	6	59	70	7	1	19	1.21
15870684--15870715	15	2.1	15	94	0	55	53	9	12	25	1.68
15870847--15870894	18	2.7	18	81	9	55	72	4	6	16	1.20
15871200--15871246	20	2.4	19	85	7	58	72	0	6	21	1.07
15872187--15872241	24	2.3	25	87	9	80	18	1	32	47	1.59
15877729--15877772	18	2.5	17	82	10	52	45	15	29	9	1.77
15880313--15880361	24	2.0	24	96	0	89	38	22	20	18	1.93
15880318--15880372	24	2.2	24	83	3	65	41	21	18	18	1.90
15882802--15882848	24	2.0	24	91	0	76	34	21	19	25	1.96
15890368--15890424	29	2.0	29	89	6	89	45	8	7	38	1.62
15892132--15892194	22	2.8	23	90	4	101	23	3	4	68	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15892388--15892461	14	5.6	13	73	19	64	25	5	1	67	1.20
15892388--15892464	38	2.1	36	95	4	136	24	5	1	68	1.17
15898173--15898316	23	6.2	23	84	9	166	11	25	20	43	1.85
15898262--15898393	62	2.1	61	79	10	135	15	23	18	42	1.88
15898235--15898402	85	2.0	85	81	8	189	14	24	19	41	1.89
15903538--15903777	52	4.6	52	83	2	268	27	15	23	33	1.95
15904394--15904433	21	1.9	21	84	0	53	30	10	22	37	1.87
15912183--15912365	52	3.5	52	77	1	195	28	13	21	36	1.92
15912180--15912369	105	1.8	103	83	2	254	28	13	21	35	1.92
15912983--15913037	21	2.4	23	85	8	69	29	10	25	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135