genome.fa.s2.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  58  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16794214--16794288	36	2.1	37	82	7	91	45	13	9	32	1.75
16795943--16795991	20	2.5	20	86	6	64	40	6	12	40	1.67
16796483--16796529	23	2.0	23	95	0	85	31	19	4	44	1.70
16801865--16801920	20	2.8	20	77	0	58	26	8	12	51	1.69
16802650--16802699	26	1.9	26	100	0	100	24	38	4	34	1.74
16806011--16806420	40	9.9	40	71	13	211	40	17	21	20	1.91
16806097--16806207	42	2.7	41	84	6	152	41	18	24	16	1.89
16806142--16806307	91	1.8	91	86	2	244	43	18	18	19	1.88
16806231--16806456	40	5.5	42	70	12	123	42	14	22	21	1.88
16806231--16806447	82	2.7	82	81	7	230	42	13	22	21	1.87
16806273--16806447	40	4.3	40	74	9	140	40	12	24	22	1.88
16808058--16808194	41	3.3	40	77	6	148	37	14	27	21	1.92
16808035--16808191	83	1.9	83	88	2	235	40	15	26	17	1.90
16808041--16808194	43	3.7	42	75	6	134	38	14	26	19	1.91
16811015--16811087	26	2.7	28	78	15	73	49	2	0	47	1.15
16811014--16811094	34	2.6	30	79	11	85	48	2	0	49	1.14
16811115--16811153	8	4.9	8	90	0	51	33	5	2	58	1.33
16811076--16811190	50	2.3	50	86	0	167	41	9	1	46	1.46
16811033--16811232	42	4.8	42	71	8	131	45	8	2	43	1.47
16811134--16811268	34	4.3	34	71	18	128	44	9	2	43	1.49
16811168--16811245	8	9.5	8	79	5	66	39	5	3	51	1.42
16811199--16811244	24	1.9	24	90	0	74	39	2	6	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16811256--16811322	14	5.0	13	73	12	55	44	8	0	46	1.35
16811234--16811352	40	3.0	40	86	0	175	47	11	0	39	1.46
16817110--16817205	42	2.3	43	88	1	149	25	18	29	27	1.98
16817195--16817263	34	2.1	33	86	2	93	24	20	20	34	1.96
16817203--16817275	34	2.1	34	82	0	83	26	20	16	36	1.93
16818584--16819053	23	20.3	23	87	0	607	35	4	13	45	1.65
16819132--16819236	36	2.9	36	91	0	174	28	12	22	36	1.91
16821604--16821645	14	3.1	14	82	6	59	47	0	0	52	1.00
16822397--16822428	16	2.0	17	88	11	50	15	18	0	65	1.27
16822398--16822448	24	2.0	27	85	11	72	9	21	0	68	1.18
16826283--16826309	4	6.8	4	100	0	54	51	25	22	0	1.48
16831307--16831441	67	2.0	68	94	1	236	45	17	7	29	1.76
16843281--16843350	35	2.0	35	94	0	122	20	27	10	42	1.83
16851823--16852060	51	4.6	52	85	4	286	34	23	13	28	1.93
16851766--16852056	52	5.6	52	80	5	286	34	23	13	28	1.93
16861471--16861559	34	2.6	34	85	1	106	15	17	29	37	1.91
16861470--16861559	17	5.2	17	77	11	94	15	17	28	37	1.91
16861802--16861871	30	2.3	30	92	2	113	35	4	28	31	1.77
16861925--16861957	15	2.2	15	89	10	50	27	9	33	30	1.88
16862042--16862094	28	2.0	28	92	7	92	24	18	3	52	1.62
16862373--16862496	43	2.8	44	88	2	187	37	1	17	42	1.59
16868763--16868909	58	2.5	56	80	10	161	45	3	1	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16869078--16869149	16	4.5	17	88	11	116	26	27	5	40	1.78
16883472--16883506	18	1.9	18	88	0	52	45	8	25	20	1.79
16900220--16900267	20	2.4	20	75	6	53	41	4	0	54	1.20
16900265--16900308	23	1.9	23	86	9	63	65	0	4	29	1.12
16903114--16903151	13	2.7	14	88	12	60	63	10	5	21	1.46
16908806--16908952	42	3.5	42	78	4	152	25	25	10	38	1.88
16911567--16911604	13	3.0	13	88	3	51	34	0	15	50	1.45
16931038--16931144	38	2.8	38	81	5	135	28	20	21	28	1.98
16935339--16935370	16	2.0	16	100	0	64	12	12	37	37	1.81
16940404--16940446	11	3.8	11	80	17	52	30	2	2	65	1.18
16940407--16940450	23	1.9	23	90	0	70	31	2	4	61	1.28
16954748--16954788	15	2.7	15	96	0	73	26	24	24	24	2.00
16954694--16954770	30	2.6	30	85	0	109	22	19	24	33	1.97
16963662--16964071	50	8.4	49	75	10	221	35	16	24	23	1.95
16963701--16964252	100	5.7	100	73	9	392	36	17	23	22	1.95
16963867--16963950	42	2.0	42	90	0	132	34	10	29	25	1.90
16963822--16964190	92	4.0	92	74	7	224	36	16	25	22	1.94
16963712--16964199	192	2.6	191	82	2	552	36	17	24	22	1.95
16963909--16964252	50	7.1	50	74	8	235	35	18	24	21	1.95
16964110--16964253	47	3.0	48	84	6	182	35	21	23	19	1.96
16963975--16964238	139	1.9	140	83	2	341	35	18	24	21	1.95
16964117--16964304	50	3.8	49	82	7	186	36	21	21	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16965442--16965482	19	2.2	19	86	0	55	41	2	7	48	1.44
16968321--16968360	18	2.2	18	86	8	55	75	5	5	15	1.15
16979206--16979230	12	2.1	12	100	0	50	16	36	32	16	1.90
16979267--16979297	12	2.6	12	94	0	53	25	22	32	19	1.97
16985967--16986022	27	2.2	26	84	12	71	46	19	3	30	1.67
16987175--16987265	36	2.5	36	98	0	173	24	26	17	31	1.97
16999851--16999927	32	2.4	32	88	0	109	19	9	29	41	1.82
16999920--16999999	23	3.6	22	76	10	83	30	12	25	32	1.92
17010169--17010357	52	3.6	52	91	0	270	29	14	24	31	1.95
17012134--17012181	22	2.0	24	84	11	64	45	2	12	39	1.54
17013381--17013413	17	2.0	17	88	5	50	51	6	0	42	1.26
17016626--17017291	163	4.2	157	78	7	559	34	19	14	30	1.92
17018961--17019011	10	5.6	9	80	13	59	62	1	1	33	1.17
17019370--17019443	10	7.2	10	71	20	55	40	4	1	54	1.28
17019427--17019477	16	3.2	16	73	15	52	41	0	3	54	1.19
17037116--17037156	21	2.0	21	90	0	64	31	26	21	19	1.97
17049435--17049623	26	7.4	26	71	4	143	17	22	16	42	1.88
17049435--17049619	76	2.4	76	85	0	235	17	22	16	43	1.88
17079166--17079267	36	2.8	36	83	2	125	24	16	22	36	1.94
17079245--17079291	24	2.0	24	86	0	67	25	14	25	34	1.94
17082630--17082685	20	2.7	21	78	15	55	41	14	0	44	1.45
17088110--17088187	21	3.6	21	77	13	77	42	29	8	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17089843--17089881	20	2.0	20	85	10	53	41	5	0	53	1.23
17101018--17101067	21	2.4	21	83	6	66	30	28	14	28	1.95
17117326--17117405	26	3.3	24	84	8	117	23	22	26	27	2.00
17119086--17119148	29	2.2	29	88	0	90	31	22	22	23	1.98
17123765--17123816	20	2.5	22	82	14	58	44	7	0	48	1.31
17135011--17135060	21	2.4	21	83	6	66	30	28	14	28	1.95
17141028--17141477	195	2.3	194	78	6	460	26	26	19	27	1.99
17156069--17156829	378	2.0	379	92	0	1254	30	21	19	28	1.98
17161384--17161436	26	2.0	26	100	0	106	22	28	22	26	1.99
17163123--17163185	29	2.2	29	88	0	90	31	22	22	23	1.98
17166134--17166351	114	1.9	114	94	1	355	26	14	29	29	1.95
17170427--17170483	30	1.9	30	85	7	80	28	12	3	56	1.52
17173533--17173592	26	2.2	28	85	5	79	36	5	10	48	1.59
17173548--17173599	26	2.0	26	84	0	68	38	7	7	46	1.61
17184228--17184262	16	2.2	16	100	0	70	51	5	8	34	1.56
17186159--17186196	17	2.2	17	90	0	58	57	0	23	18	1.40
17186410--17186445	16	2.2	16	95	0	63	50	5	16	27	1.68
17188900--17188946	20	2.3	20	85	0	58	14	29	14	40	1.87
17190240--17190321	37	2.2	38	86	6	114	50	1	1	47	1.16
17190778--17190826	15	3.4	15	72	16	50	16	0	26	57	1.40
17191425--17191483	24	2.5	23	89	8	91	49	0	1	49	1.11
17191439--17191483	9	5.3	9	75	24	53	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17192247--17192285	20	2.0	20	85	10	53	5	5	61	28	1.39
17193116--17193285	23	7.4	23	92	0	268	47	12	4	35	1.63
17202789--17202824	16	2.2	16	95	0	63	27	16	5	50	1.68
17203038--17203075	17	2.2	17	90	0	58	18	23	0	57	1.40
17203018--17203065	24	2.0	24	87	0	69	20	27	2	50	1.60
17208388--17208429	17	2.4	17	84	11	50	21	26	2	50	1.61
17215632--17215691	26	2.2	26	85	5	75	48	10	5	36	1.59
17221968--17222024	30	1.9	30	85	7	80	28	12	3	56	1.52
17228970--17229026	30	1.9	30	85	7	80	28	12	3	56	1.52
17229331--17229555	114	2.0	115	92	0	380	30	29	14	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135