genome.fa.s2.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  131  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40029196--40029236	21	2.1	19	86	9	55	51	0	7	41	1.30
40034231--40034255	13	1.9	13	100	0	50	52	0	0	48	1.00
40035428--40035479	25	2.1	25	100	0	104	34	3	11	50	1.57
40036799--40036843	12	3.8	12	81	0	54	22	17	13	46	1.83
40036798--40036843	24	1.9	24	90	0	74	21	17	15	45	1.85
40036809--40036855	23	2.0	24	87	4	69	21	17	12	48	1.79
40036985--40037048	11	5.6	11	70	7	56	21	12	21	43	1.86
40036949--40037082	23	5.8	23	86	4	155	26	11	20	41	1.86
40036944--40037057	12	9.7	12	67	17	69	25	12	20	42	1.87
40041962--40041986	13	1.9	13	100	0	50	48	16	28	8	1.74
40042382--40042483	38	2.7	38	85	1	132	55	4	12	26	1.57
40042426--40042485	18	3.2	18	68	23	52	56	5	10	28	1.53
40044939--40044966	5	5.6	5	100	0	56	0	42	17	39	1.50
40045761--40045802	22	1.9	22	90	9	68	0	16	0	83	0.65
40047980--40048131	47	3.3	48	78	13	144	36	13	23	27	1.92
40063908--40063943	12	3.0	12	87	0	54	38	0	8	52	1.32
40066958--40067112	58	2.6	59	84	9	192	51	1	1	45	1.17
40067077--40067127	24	2.1	24	82	10	59	56	0	5	37	1.23
40071058--40071360	153	2.0	153	99	0	597	34	11	11	41	1.79
40085196--40085252	21	2.7	21	75	15	55	54	1	1	42	1.21
40086699--40086748	23	2.3	21	82	6	55	10	6	18	66	1.42
40087490--40087549	31	1.9	31	83	6	77	45	11	6	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40091501--40091540	20	1.9	21	85	10	55	67	12	5	15	1.38
40093086--40093133	18	2.7	18	81	15	64	47	27	0	25	1.52
40108854--40108923	33	2.2	32	82	7	88	61	7	10	21	1.51
40109299--40109363	33	2.0	31	85	5	85	23	24	0	52	1.48
40109905--40109937	15	2.3	15	89	5	50	24	9	18	48	1.76
40109955--40110036	17	4.8	17	80	7	94	52	3	0	43	1.18
40110244--40110285	20	2.2	19	86	4	57	66	0	2	30	1.04
40110765--40110804	17	2.4	17	100	0	80	42	0	0	57	0.98
40111499--40111541	16	3.0	14	81	15	52	60	0	2	37	1.10
40112527--40112862	116	2.9	115	79	12	368	36	27	3	32	1.73
40112527--40112862	29	11.6	29	75	14	277	36	27	3	32	1.73
40112527--40112923	58	6.9	58	76	12	206	35	28	5	31	1.79
40118210--40118252	22	2.0	22	90	9	70	60	13	16	9	1.58
40118692--40118755	22	3.0	22	81	2	76	35	28	12	23	1.91
40119368--40119409	21	2.0	22	86	13	61	19	0	11	69	1.19
40119716--40119764	13	3.8	13	80	0	62	40	2	20	36	1.64
40124728--40124785	22	2.6	22	75	0	62	62	8	6	22	1.48
40130926--40130974	22	2.1	24	85	14	68	22	4	8	65	1.37
40142670--40143807	381	3.0	381	93	0	1893	33	16	24	25	1.96
40145896--40146459	222	2.5	221	89	1	860	35	12	24	26	1.92
40149336--40149393	29	2.0	29	82	0	71	29	17	15	37	1.90
40175224--40175416	66	2.9	66	86	0	269	44	8	30	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40184883--40184909	11	2.5	11	100	0	54	7	11	0	81	0.87
40188396--40188444	22	2.2	22	82	7	55	67	6	6	20	1.35
40196208--40196276	29	2.4	28	80	9	75	52	2	7	37	1.44
40208511--40208544	2	18.0	2	88	11	54	50	0	0	50	1.00
40208661--40208704	3	15.0	3	80	4	54	4	29	2	63	1.26
40208659--40208703	23	2.1	21	88	12	65	4	26	2	66	1.22
40209511--40209545	18	1.9	18	94	0	61	51	14	2	31	1.57
40209498--40209546	14	3.5	14	80	0	53	46	12	4	36	1.60
40209848--40210567	205	3.5	205	90	0	1098	27	11	22	38	1.89
40217946--40217979	5	6.8	5	100	0	68	41	20	38	0	1.53
40219647--40219712	22	2.9	24	77	6	66	48	3	45	3	1.33
40219722--40219778	18	3.3	18	78	9	57	49	0	47	3	1.18
40220267--40220332	31	2.1	31	91	0	105	39	7	7	45	1.61
40226952--40227352	123	3.3	123	82	2	482	28	30	13	26	1.94
40227247--40227574	117	3.0	104	76	11	325	25	32	14	26	1.95
40227124--40227574	222	2.0	225	84	4	597	26	31	14	26	1.95
40232780--40232807	13	2.2	13	100	0	56	53	14	32	0	1.41
40235905--40236085	91	2.0	91	80	8	208	48	13	4	33	1.64
40243249--40243335	43	2.0	43	93	0	147	19	21	12	45	1.83
40245158--40245184	2	13.5	2	100	0	54	51	0	48	0	1.00
40246695--40246769	29	2.6	30	82	6	91	42	8	2	46	1.47
40247154--40247213	20	2.9	19	77	20	59	40	31	3	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40259460--40259675	111	1.9	111	99	0	423	37	11	12	37	1.80
40259812--40259904	31	3.1	31	68	9	75	40	3	10	45	1.55
40270927--40271000	31	2.4	30	82	6	87	35	12	6	45	1.68
40280425--40280459	17	2.1	17	88	0	52	31	0	11	57	1.34
40287283--40287399	58	2.0	58	100	0	234	24	18	34	22	1.96
40301941--40302003	32	1.9	34	84	12	87	42	0	9	47	1.36
40311061--40311088	14	2.0	14	100	0	56	50	7	0	42	1.30
40324218--40324264	17	2.6	18	80	19	53	44	0	6	48	1.28
40328546--40328596	20	2.4	22	80	9	61	33	5	7	52	1.54
40334778--40334809	13	2.4	14	90	10	50	50	0	3	46	1.17
40353838--40353881	22	2.0	22	86	8	63	34	2	2	61	1.21
40354371--40354510	63	2.2	63	100	0	280	54	4	5	36	1.42
40355064--40355102	17	2.3	17	95	0	69	53	17	28	0	1.44
40359497--40359538	22	1.9	22	85	0	57	33	14	0	52	1.42
40374893--40374917	6	4.2	6	100	0	50	84	0	0	16	0.63
40376567--40376634	2	34.0	2	100	0	136	50	0	0	50	1.00
40376877--40376930	26	2.1	26	82	0	63	29	24	9	37	1.86
40383518--40383572	26	2.1	26	83	6	67	45	1	5	47	1.36
40393205--40393286	28	3.1	27	66	16	73	41	1	4	52	1.31
40410559--40410626	32	2.1	32	86	0	91	39	8	22	29	1.84
40414530--40414568	18	2.2	18	86	9	53	53	10	0	35	1.35
40417469--40417501	17	1.9	17	100	0	66	0	27	18	54	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40425263--40425335	29	2.5	31	80	8	89	42	16	9	31	1.80
40430235--40430306	30	2.4	30	83	4	83	41	6	5	45	1.54
40440034--40440075	14	3.0	14	92	0	66	66	0	0	33	0.92
40440778--40440830	17	2.8	20	75	16	58	30	3	0	66	1.10
40440778--40440832	19	2.9	18	78	10	58	30	3	0	65	1.10
40451736--40451789	6	9.0	6	93	0	72	22	1	27	48	1.61
40451974--40452053	33	2.5	31	83	16	103	35	3	1	60	1.23
40465617--40465681	30	2.2	30	91	5	105	43	4	9	43	1.57
40470201--40470294	47	2.0	47	91	0	152	32	6	9	51	1.60
40471855--40471883	12	2.3	13	94	5	51	51	24	0	24	1.48
40486229--40486266	20	1.9	20	88	0	58	18	23	21	36	1.95
40492375--40492426	25	2.1	24	82	10	61	57	3	3	34	1.35
40492816--40492854	18	2.2	18	86	9	53	20	23	0	56	1.42
40493868--40493916	16	2.9	18	77	20	52	48	0	0	51	1.00
40506193--40506248	16	3.4	16	77	2	58	69	0	0	30	0.89
40510273--40510300	13	2.2	13	100	0	56	21	21	17	39	1.93
40515920--40515959	2	20.0	2	100	0	80	50	0	0	50	1.00
40517239--40517347	52	2.1	52	87	1	157	32	12	21	33	1.91
40518792--40518848	26	2.1	28	87	6	82	49	14	7	29	1.69
40528634--40528676	18	2.3	20	88	11	65	72	2	0	25	0.97
40528638--40528683	7	6.7	7	76	14	51	71	2	0	26	0.97
40538440--40538472	4	8.2	4	100	0	66	48	24	0	27	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40551777--40551831	21	2.5	22	75	21	62	14	14	9	61	1.55
40554911--40555131	85	2.6	85	83	2	282	33	9	26	29	1.88
40557645--40557822	4	45.2	4	79	7	132	42	27	7	22	1.80
40557610--40557675	21	3.4	21	76	23	81	43	39	1	15	1.55
40557646--40557822	50	3.4	50	79	7	176	42	27	7	22	1.80
40557690--40557822	58	2.3	58	84	2	178	42	24	8	24	1.81
40557645--40557822	58	3.2	54	76	11	173	42	27	7	22	1.80
40558590--40558627	17	2.3	17	86	4	51	28	7	7	55	1.57
40561036--40561063	10	2.8	10	100	0	56	78	0	21	0	0.75
40564920--40564970	25	2.0	26	92	3	86	45	3	5	45	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135