Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  115  of  135  ( 16151 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34463779--34463834
30
1.9
29
89
7
87
58
14
8
17
1.61
34473444--34473638
80
2.4
80
81
6
259
34
26
18
21
1.96
34475436--34475463
4
7.0
4
100
0
56
0
25
0
75
0.81
34482979--34483020
22
1.9
22
85
9
59
42
2
2
52
1.27
34483432--34483499
29
2.5
26
75
15
66
47
2
5
44
1.42
34484275--34484317
16
2.7
16
79
13
52
72
0
0
27
0.85
34484275--34484318
10
4.2
10
77
11
52
72
0
0
27
0.85
34484275--34484318
22
2.1
21
87
8
63
72
0
0
27
0.85
34494233--34494272
16
2.4
16
87
4
53
40
0
0
60
0.97
34495621--34495653
15
2.3
15
94
5
59
42
0
0
57
0.98
34496850--34497349
123
4.1
123
76
6
343
23
20
19
37
1.94
34497406--34497687
123
2.3
120
83
7
363
23
24
17
34
1.96
34497011--34497622
339
1.8
339
79
3
721
23
21
19
36
1.95
34497408--34497742
123
2.8
122
83
5
322
23
23
17
34
1.96
34497727--34498111
120
3.2
120
74
9
336
21
21
21
35
1.96
34510921--34510955
2
18.0
2
91
5
54
0
45
0
54
0.99
34522490--34522543
21
2.5
20
80
16
56
20
0
35
44
1.52
34534570--34534610
21
1.9
22
90
5
66
24
0
2
73
0.96
34543260--34543327
30
2.2
30
84
2
82
41
1
8
48
1.43
34545194--34545258
29
2.3
29
86
2
87
33
1
3
61
1.21
34546489--34546590
22
4.5
22
91
2
132
35
27
23
13
1.93
34546489--34546590
45
2.3
45
84
3
134
35
27
23
13
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34548461--34548489
5
5.8
5
100
0
58
58
0
41
0
0.98
34549011--34549074
29
2.1
29
85
5
83
46
15
14
23
1.82
34563102--34563148
23
1.9
26
83
12
64
57
6
6
29
1.49
34564830--34564855
2
13.0
2
100
0
52
50
0
0
50
1.00
34571691--34571715
8
3.1
8
100
0
50
52
0
0
48
1.00
34575979--34576047
30
2.3
30
82
5
86
30
24
15
28
1.96
34576842--34576869
6
4.7
6
100
0
56
0
14
0
85
0.59
34581249--34581293
5
9.0
5
100
0
90
60
0
0
40
0.97
34582893--34582952
18
3.2
18
73
17
59
40
3
1
55
1.27
34609425--34609453
8
3.6
8
100
0
58
79
0
10
10
0.94
34612027--34612090
24
2.7
23
82
4
74
60
1
3
34
1.22
34630573--34630606
18
1.9
18
88
5
52
14
8
2
73
1.19
34634045--34634086
17
2.6
17
78
14
54
47
0
0
52
1.00
34635129--34635179
15
3.3
15
76
13
50
37
0
1
60
1.08
34635645--34635767
60
2.0
61
92
1
203
22
6
5
65
1.38
34638600--34638647
20
2.4
20
86
6
62
52
0
2
45
1.12
34639224--34639392
12
14.8
12
67
22
57
53
4
2
39
1.35
34639222--34639305
22
4.0
21
70
23
61
59
4
1
34
1.26
34663932--34663975
5
9.0
5
95
5
81
20
0
40
38
1.53
34673165--34673368
59
3.5
57
84
6
248
36
2
21
38
1.69
34673165--34673390
29
7.7
29
72
14
169
37
2
22
38
1.68
34675274--34675369
6
17.0
6
74
20
82
54
1
3
41
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34675274--34675380
17
6.4
16
77
13
90
55
1
2
40
1.25
34675285--34675363
23
3.7
22
70
25
71
55
1
3
39
1.26
34675326--34675380
11
4.9
11
75
4
56
60
1
1
36
1.18
34675303--34675358
23
2.4
23
96
0
103
55
0
3
41
1.17
34676357--34676382
11
2.4
11
100
0
52
65
0
0
34
0.93
34677158--34677192
18
1.9
18
88
0
52
42
2
0
54
1.15
34681270--34681327
22
2.6
22
78
10
64
43
20
27
8
1.81
34681270--34681339
23
3.1
22
74
13
61
45
17
25
11
1.81
34681334--34681374
18
2.4
17
92
8
73
75
0
4
19
0.98
34682487--34682516
13
2.4
13
94
5
53
36
0
0
63
0.95
34683757--34683805
24
2.0
24
88
0
71
34
8
20
36
1.82
34686994--34687018
11
2.3
11
100
0
50
16
8
8
68
1.38
34691006--34691030
9
2.8
9
100
0
50
32
0
36
32
1.58
34700136--34700185
2
25.0
2
100
0
100
0
0
50
50
1.00
34707447--34707489
17
2.4
18
84
7
61
9
2
16
72
1.21
34707436--34707498
19
3.3
19
78
13
76
7
4
19
68
1.33
34707482--34707541
11
5.4
11
73
11
50
10
8
18
63
1.50
34707544--34707586
20
2.2
20
86
0
59
4
6
20
67
1.33
34708232--34708281
21
2.5
19
83
9
64
28
6
4
62
1.37
34708297--34708338
19
2.3
18
84
12
50
28
7
2
61
1.35
34708324--34708375
18
2.9
18
83
8
63
32
1
0
65
1.04
34708833--34708890
28
2.1
28
100
0
116
32
17
3
46
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34710949--34710989
15
2.5
17
80
11
59
65
0
0
34
0.93
34713709--34713761
18
3.1
18
86
10
67
54
0
0
45
0.99
34718462--34718517
22
2.7
21
81
8
69
75
1
7
16
1.11
34718462--34718521
21
2.8
22
85
5
79
73
1
8
16
1.16
34719746--34719786
21
1.9
22
85
5
57
60
9
4
24
1.47
34730112--34730140
14
2.0
15
93
6
51
75
10
0
13
1.04
34747129--34747171
16
2.8
15
79
13
52
46
0
6
46
1.30
34747129--34747177
14
3.3
15
83
13
57
48
0
6
44
1.27
34748169--34748214
15
3.1
15
73
17
51
56
10
6
26
1.58
34748476--34748521
23
2.1
22
84
8
58
39
2
10
47
1.51
34751722--34751762
14
2.9
14
81
0
55
36
2
0
60
1.10
34751708--34751762
28
2.0
28
96
0
101
34
1
0
63
1.05
34751772--34751832
25
2.4
25
77
20
65
57
0
9
32
1.32
34755587--34755654
18
3.3
21
68
21
54
48
2
4
44
1.38
34756353--34756415
30
2.1
31
82
14
78
52
19
7
20
1.70
34756707--34756818
47
2.4
47
87
3
154
19
3
20
56
1.57
34756938--34757007
30
2.3
30
81
13
83
22
14
20
42
1.88
34757433--34757514
29
2.8
29
85
9
96
39
7
9
43
1.65
34757459--34757546
31
2.9
30
83
8
90
36
11
12
39
1.79
34758064--34758092
12
2.5
12
94
5
51
13
0
6
79
0.93
34764798--34764875
29
2.7
29
77
15
72
35
6
24
33
1.81
34764827--34764989
59
2.8
59
78
8
163
37
2
24
35
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34764824--34765060
30
8.0
30
77
8
209
35
2
25
36
1.70
34766124--34766182
3
20.0
3
92
3
102
32
1
0
66
1.02
34766181--34766206
3
8.7
3
100
0
52
34
30
0
34
1.58
34766886--34766953
17
4.1
17
79
12
79
52
4
1
41
1.30
34766897--34766944
15
3.1
15
84
6
60
54
6
0
39
1.26
34766886--34766953
32
2.1
33
89
10
104
52
4
1
41
1.30
34767019--34767109
21
4.3
21
77
9
105
7
6
17
68
1.36
34767103--34767196
12
8.5
11
73
15
52
7
2
20
70
1.22
34767019--34767121
21
4.9
21
73
10
84
7
5
17
68
1.34
34767021--34767144
63
1.9
65
83
6
164
8
5
16
69
1.33
34767130--34767209
21
3.8
20
75
18
81
8
1
20
70
1.21
34767103--34767209
44
2.4
45
83
7
139
8
1
20
69
1.24
34768072--34768096
7
3.6
7
100
0
50
44
32
12
12
1.78
34769598--34769626
15
2.0
15
93
6
51
37
6
0
55
1.27
34771788--34771827
20
2.0
21
85
5
55
75
2
12
10
1.15
34787595--34787655
19
3.2
20
72
11
56
63
1
1
32
1.13
34787629--34787673
24
2.0
24
86
8
67
66
0
0
33
0.92
34788220--34788245
12
2.2
12
100
0
52
61
0
0
38
0.96
34789910--34789969
21
2.8
22
85
7
61
15
8
1
75
1.12
34789919--34789949
16
1.9
16
93
0
53
16
6
0
77
0.97
34795540--34795679
74
1.9
74
86
5
203
41
7
10
41
1.66
34795918--34795955
18
2.1
18
85
9
51
18
42
0
39
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34799178--34799214
14
2.8
14
84
8
51
67
5
5
21
1.31
34807376--34807428
3
17.7
3
88
0
79
60
0
5
33
1.20
34814069--34814108
18
2.3
18
87
8
57
65
5
0
30
1.14
34814197--34814229
17
1.9
17
88
11
50
69
9
0
21
1.15
34814250--34814340
11
8.5
11
76
10
64
71
8
2
17
1.22
34814250--34814340
22
4.2
22
77
12
82
71
8
2
17
1.22
34814264--34814314
19
2.7
19
81
0
57
68
5
3
21
1.27
34818095--34818155
30
2.0
30
90
0
95
34
13
4
47
1.64
34824613--34824652
16
2.6
16
84
4
55
62
0
0
37
0.95
34825198--34825241
23
1.9
23
85
0
61
27
2
4
65
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135