genome.fa.s2.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  14  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3782066--3782128	17	3.8	16	83	8	72	53	3	0	42	1.16
3782369--3783686	91	14.6	91	91	2	2059	32	19	16	31	1.94
3782369--3783686	274	4.9	273	91	1	2059	32	19	16	31	1.94
3782369--3783686	365	3.6	365	94	1	2250	32	19	16	31	1.94
3785238--3785306	18	3.9	17	76	14	52	1	14	5	78	1.01
3785231--3785288	31	1.9	30	82	3	71	1	15	6	75	1.09
3785260--3785306	21	2.2	21	85	7	60	2	17	2	78	0.94
3786055--3786097	14	2.9	14	86	13	59	0	0	16	83	0.64
3786123--3786157	11	2.9	12	88	12	54	2	0	11	85	0.69
3789445--3789490	18	2.4	20	82	7	60	65	10	15	8	1.47
3790835--3791111	58	4.8	58	78	6	267	38	4	26	29	1.76
3791005--3791106	29	3.5	29	74	15	102	38	4	27	29	1.77
3790836--3791134	116	2.6	116	77	7	311	39	4	27	29	1.76
3791145--3791380	30	7.9	29	75	12	192	42	0	18	38	1.56
3791145--3791380	90	2.6	89	81	6	264	42	0	18	38	1.56
3791155--3791394	60	4.0	59	88	5	308	41	0	20	37	1.58
3793983--3794037	27	2.0	27	89	0	83	40	0	5	54	1.23
3794001--3794100	6	16.8	6	77	13	91	47	1	1	51	1.14
3794001--3794074	17	4.6	17	85	11	93	40	1	1	56	1.16
3793991--3794068	11	7.9	10	71	25	51	39	1	2	56	1.21
3795629--3795840	30	7.1	30	85	2	282	39	22	3	34	1.71
3807914--3808329	37	12.4	31	67	16	170	34	17	20	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3807972--3808374	68	5.9	68	92	1	646	34	17	20	27	1.95
3808708--3808762	27	2.0	27	89	0	83	40	0	5	54	1.23
3808726--3808825	6	16.8	6	77	13	91	47	1	1	51	1.14
3808726--3808799	17	4.6	17	85	11	93	40	1	1	56	1.16
3808716--3808793	11	7.9	10	71	25	51	39	1	2	56	1.21
3810356--3810658	30	10.1	30	90	2	446	38	24	2	33	1.71
3812700--3812734	15	2.3	15	90	0	52	48	0	0	51	1.00
3814509--3814753	90	2.7	90	84	0	310	14	16	25	43	1.86
3814437--3814755	45	7.1	44	73	7	189	14	15	26	42	1.86
3814464--3814753	90	3.2	88	78	5	287	14	15	26	43	1.85
3818524--3818811	90	3.2	90	85	3	375	12	15	27	44	1.83
3818525--3818775	135	1.9	135	82	5	319	12	14	28	44	1.82
3818524--3818807	135	2.1	134	79	5	313	11	15	28	44	1.82
3818524--3818811	45	6.4	45	78	6	280	12	15	27	44	1.83
3821052--3821076	9	2.8	9	100	0	50	76	0	0	24	0.80
3821801--3821850	16	3.2	15	82	5	55	40	4	6	50	1.46
3823761--3823803	15	2.9	15	83	10	52	20	2	0	76	0.89
3823761--3823803	16	2.7	15	79	10	50	20	2	0	76	0.89
3832692--3832860	29	5.8	28	70	24	109	32	2	30	34	1.71
3832665--3832890	59	3.8	59	89	1	337	34	3	29	33	1.73
3832725--3832893	30	5.7	31	71	23	123	33	2	29	34	1.73
3834053--3834102	21	2.4	21	87	9	68	50	6	2	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3837269--3837293	6	4.2	6	100	0	50	48	16	0	36	1.46
3848288--3848438	63	2.5	60	83	13	195	49	3	0	45	1.25
3848288--3848458	63	2.7	64	82	7	192	52	3	0	43	1.22
3848992--3864552	39	386.8	40	66	17	4852	25	19	23	32	1.97
3848991--3863245	80	177.1	80	86	5	10444	25	19	23	32	1.97
3848991--3864878	240	65.7	239	82	7	11149	25	19	23	32	1.97
3852208--3852303	48	2.0	48	93	0	165	29	15	21	33	1.94
3853373--3853468	48	2.0	48	89	4	149	31	15	19	33	1.93
3853740--3853835	48	2.0	48	93	0	165	29	15	22	32	1.95
3854585--3854680	48	2.0	48	91	4	158	27	18	22	31	1.97
3855390--3855485	48	2.0	48	97	0	183	27	15	25	32	1.96
3856236--3856331	48	2.0	48	93	0	165	29	15	21	33	1.94
3857042--3857137	48	2.0	48	97	0	183	27	15	25	32	1.96
3858288--3858383	48	2.0	48	93	0	165	29	15	21	33	1.94
3859094--3859189	48	2.0	48	97	0	183	27	15	25	32	1.96
3860340--3860435	48	2.0	48	93	0	165	29	15	21	33	1.94
3861146--3861241	48	2.0	48	97	0	183	27	15	25	32	1.96
3862392--3862487	48	2.0	48	93	0	165	29	15	21	33	1.94
3863198--3863293	48	2.0	48	97	0	183	27	15	25	32	1.96
3863246--3864578	80	16.7	80	93	0	2220	25	18	23	32	1.97
3849880--3864878	160	93.3	159	84	6	11254	25	19	23	32	1.97
3864583--3864878	80	3.7	80	93	0	495	23	17	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3864582--3864874	41	7.3	41	74	10	291	23	18	25	32	1.97
3864361--3864801	223	2.0	222	96	0	810	24	17	24	32	1.97
3864964--3865109	50	2.9	50	87	0	202	21	25	18	34	1.96
3866029--3866088	6	10.0	6	78	10	61	0	18	1	80	0.80
3866029--3866087	20	2.8	20	85	7	82	0	18	1	79	0.81
3866028--3866088	27	2.2	28	82	8	81	0	19	1	78	0.83
3866033--3866063	14	2.1	14	94	5	53	0	22	0	77	0.77
3866057--3866109	18	3.2	16	80	12	54	5	9	1	83	0.89
3866036--3866109	34	2.1	34	83	11	89	4	13	1	81	0.91
3871082--3871247	63	2.7	62	88	8	232	53	2	0	43	1.13
3873231--3873334	30	3.2	30	64	25	75	53	5	14	25	1.63
3873230--3873367	69	2.0	69	100	0	276	53	5	14	26	1.63
3883152--3883188	6	6.2	6	100	0	74	32	0	67	0	0.91
3885625--3885661	17	2.2	17	100	0	74	27	10	0	62	1.28
3888222--3888251	16	1.9	16	93	6	53	33	20	0	46	1.51
3889966--3890000	16	2.2	16	90	5	54	8	8	34	48	1.64
3897827--3897873	17	2.7	17	81	18	53	48	8	2	40	1.45
3899637--3899680	23	1.9	23	81	9	54	27	4	11	56	1.53
3900096--3900148	26	2.0	27	82	10	65	41	7	0	50	1.30
3900235--3900289	27	1.9	29	85	10	78	56	5	0	38	1.23
3900246--3900317	30	2.4	29	80	15	76	55	6	1	36	1.35
3903757--3903791	6	5.8	6	96	0	61	20	51	0	28	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3904258--3904287	2	15.0	2	100	0	60	50	0	0	50	1.00
3907818--3907843	12	2.2	12	100	0	52	42	0	0	57	0.98
3908420--3908485	13	5.1	13	75	14	64	36	4	22	36	1.75
3909320--3909382	9	7.8	9	73	26	61	50	0	0	49	1.00
3909316--3909402	20	4.4	18	73	25	70	51	0	0	48	1.00
3909333--3909391	13	4.5	13	71	23	52	49	0	0	50	1.00
3909320--3909406	39	2.3	38	96	4	158	52	0	0	47	1.00
3910056--3910090	15	2.2	17	90	10	56	17	20	11	51	1.75
3910393--3910434	20	2.0	22	90	9	70	52	0	0	47	1.00
3911905--3911944	19	2.1	19	95	0	71	42	10	7	40	1.67
3920417--3920509	47	2.0	47	100	0	186	32	13	25	27	1.94
3922349--3922386	15	2.4	16	86	8	51	60	2	0	36	1.11
3937764--3937843	30	2.6	30	75	13	83	52	2	3	41	1.33
3938863--3938922	21	2.7	22	73	19	54	36	0	0	63	0.95
3940765--3940811	2	23.5	2	100	0	94	48	0	0	51	1.00
3942239--3942270	2	16.0	2	100	0	64	50	0	0	50	1.00
3950744--3950814	24	2.9	25	78	4	63	63	1	2	32	1.18
3962553--3962626	38	1.9	38	88	0	112	45	8	8	37	1.63
3962968--3963086	52	2.3	53	80	12	138	34	15	15	34	1.89
3963055--3963281	62	3.8	61	82	8	247	29	16	12	40	1.86
3963031--3963299	61	4.5	61	78	7	282	28	17	14	39	1.89
3964201--3964321	30	4.1	30	86	2	172	61	4	6	27	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3967732--3967832	38	2.6	40	71	10	100	21	19	28	29	1.98
3968983--3969041	22	2.7	22	91	0	100	20	8	33	37	1.83
3969134--3969547	93	4.5	93	93	2	715	48	4	4	42	1.43
3969134--3969547	185	2.2	186	94	1	733	48	4	4	42	1.43
3969595--3969664	34	2.0	35	83	8	88	44	7	5	42	1.55
3969661--3969695	17	2.1	16	89	5	52	37	8	2	51	1.47
3973569--3974173	62	10.1	59	78	10	458	43	12	16	27	1.84
3973560--3974118	61	9.3	63	78	9	460	43	12	16	27	1.84
3985557--3985604	20	2.5	19	80	12	53	18	2	12	66	1.33
3986088--3986130	3	14.3	3	100	0	86	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135