genome.fa.s2.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  50  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13360810--13360847	17	2.3	17	81	4	51	34	5	15	44	1.69
13364055--13364094	21	1.9	21	89	0	62	37	20	17	25	1.94
13364891--13364920	15	2.0	15	93	0	51	13	26	10	50	1.73
13366707--13366747	16	2.5	17	92	4	66	24	2	0	73	0.96
13374153--13374197	22	2.0	23	86	4	65	6	8	13	71	1.31
13387291--13387353	20	3.3	18	79	14	65	30	6	3	60	1.37
13387299--13387353	20	2.8	20	83	5	67	30	5	3	60	1.37
13393280--13393304	5	5.0	5	100	0	50	40	0	0	60	0.97
13395022--13395080	18	3.2	19	75	13	52	35	1	6	55	1.36
13395021--13395081	19	3.3	18	75	11	52	34	1	6	57	1.34
13395239--13395291	23	2.3	23	93	0	88	47	13	5	33	1.66
13395242--13395290	14	3.9	13	73	26	52	46	14	6	32	1.69
13403202--13403258	25	2.3	25	93	3	98	56	7	14	22	1.62
13406773--13406806	17	2.1	17	88	5	52	35	0	14	50	1.44
13410597--13410651	24	2.2	24	83	3	65	47	9	14	29	1.75
13412961--13412987	13	2.1	13	100	0	54	0	22	7	70	1.12
13413256--13413306	3	17.0	3	80	15	61	1	29	0	68	1.00
13413255--13413306	21	2.5	21	84	6	70	1	28	0	69	0.99
13427111--13427157	24	2.0	24	84	12	62	51	8	10	29	1.66
13428700--13428739	15	2.6	16	81	18	50	2	22	2	72	1.09
13428689--13428740	16	3.3	16	75	5	52	1	21	3	73	1.10
13429326--13429368	17	2.5	17	88	0	59	58	13	9	18	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13429768--13429810	21	2.0	21	81	0	50	2	44	0	53	1.13
13429768--13429808	15	2.7	15	84	0	55	2	46	0	51	1.14
13437624--13437670	24	2.0	23	87	4	67	53	8	10	27	1.64
13439093--13439173	25	3.2	26	91	3	123	38	18	20	22	1.94
13441354--13441387	2	17.0	2	100	0	68	50	0	0	50	1.00
13441620--13441926	87	3.5	87	85	1	391	31	22	20	25	1.98
13450437--13450485	10	5.0	10	72	22	50	36	2	0	61	1.08
13453785--13453903	55	2.2	55	96	0	220	45	24	5	25	1.73
13457387--13457451	23	2.8	23	90	0	103	40	16	4	38	1.70
13459266--13459332	27	2.5	27	90	0	98	38	11	25	23	1.89
13459266--13459343	27	2.9	27	88	0	93	38	14	24	23	1.91
13470323--13470374	22	2.3	23	83	16	72	78	0	15	5	0.92
13470329--13470372	17	2.8	16	80	10	54	84	0	13	2	0.73
13472410--13472452	22	2.0	22	81	9	52	34	0	13	51	1.42
13473728--13473760	16	2.0	17	88	5	50	24	9	24	42	1.83
13475202--13475252	26	2.0	26	88	0	75	25	7	29	37	1.84
13491000--13491055	27	2.1	27	83	6	69	26	1	5	66	1.23
13494646--13494688	22	2.0	22	81	9	52	34	0	13	51	1.42
13496398--13497024	146	4.3	147	85	6	748	44	3	9	43	1.51
13496789--13496831	20	2.2	20	87	4	61	44	0	4	51	1.22
13496877--13496925	19	2.5	19	76	6	53	46	2	0	51	1.12
13521563--13521619	22	2.8	20	78	19	57	75	7	14	3	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13522567--13522784	42	5.0	43	82	9	212	22	17	22	36	1.95
13522576--13522785	90	2.4	84	80	8	249	22	17	23	36	1.95
13523838--13523883	22	2.1	21	84	4	56	52	2	2	43	1.25
13523700--13523952	126	2.0	123	89	6	386	45	4	6	43	1.50
13523822--13524127	149	2.1	146	88	4	463	42	4	9	43	1.57
13523994--13524229	50	4.6	51	72	10	180	40	4	9	45	1.57
13524959--13524990	17	1.9	17	93	6	57	18	3	6	71	1.20
13525561--13525585	3	8.3	3	100	0	50	68	0	0	32	0.90
13528925--13529093	24	7.0	24	77	7	137	33	17	21	26	1.96
13528972--13529016	22	2.0	22	91	0	72	31	22	22	24	1.99
13529602--13529748	71	2.1	71	84	2	188	30	14	25	28	1.95
13541066--13541118	22	2.4	22	83	0	70	13	30	20	35	1.91
13544511--13544576	29	2.2	32	76	17	79	59	9	4	27	1.48
13547937--13547962	6	4.3	6	100	0	52	50	0	0	50	1.00
13571728--13571864	68	2.0	68	92	0	229	33	12	23	30	1.92
13571957--13572035	39	2.0	39	92	0	131	25	10	8	55	1.62
13574232--13574264	17	1.9	17	88	11	50	42	6	0	51	1.26
13574322--13574376	27	2.0	27	96	0	101	38	9	3	49	1.52
13574333--13574390	27	2.2	26	81	6	64	39	10	6	43	1.66
13591108--13591461	178	2.0	179	95	0	638	40	11	15	31	1.83
13598723--13598753	10	3.0	10	95	4	53	9	9	3	77	1.10
13601529--13601582	19	2.9	18	81	10	56	51	3	1	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13612748--13612790	17	2.5	17	84	0	50	58	16	9	16	1.63
13625424--13625477	18	3.1	18	79	12	58	55	9	9	25	1.61
13633623--13633672	18	2.8	17	82	11	57	18	18	20	44	1.88
13639263--13639287	11	2.3	11	100	0	50	24	0	8	68	1.16
13643511--13643705	94	2.1	95	97	0	365	24	20	7	47	1.76
13647708--13647737	3	10.0	3	100	0	60	66	0	0	33	0.92
13650539--13650581	16	2.6	16	86	13	61	39	11	4	44	1.62
13657681--13657707	7	3.9	7	100	0	54	11	29	0	59	1.32
13659151--13659193	18	2.3	19	88	4	61	55	11	18	13	1.68
13659259--13659284	3	8.7	3	100	0	52	0	30	0	69	0.89
13693720--13694345	209	3.0	208	89	2	898	29	11	17	40	1.85
13708303--13708363	28	2.2	27	80	8	68	21	1	3	73	1.06
13708323--13708370	16	2.9	16	93	3	78	16	0	0	83	0.65
13708316--13708370	22	2.4	23	93	6	103	16	0	0	83	0.64
13708314--13708370	6	10.0	6	88	11	93	17	0	0	82	0.67
13709245--13709288	21	2.0	22	87	12	65	77	2	15	4	1.04
13721442--13721488	24	2.0	25	87	8	71	70	4	14	10	1.31
13724370--13724402	17	1.9	17	88	11	50	18	6	3	72	1.18
13729619--13729776	40	4.0	40	79	3	156	29	25	15	29	1.96
13734345--13734373	8	3.8	8	90	9	51	44	0	0	55	0.99
13734926--13734965	11	3.5	11	83	6	53	57	0	0	42	0.98
13735035--13735117	31	2.8	30	78	5	96	34	9	8	46	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13738542--13738576	14	2.5	14	85	0	52	37	8	0	54	1.31
13740070--13740172	51	2.0	51	96	1	188	19	13	14	52	1.74
13751172--13751428	88	2.9	85	76	8	248	36	3	15	44	1.64
13752250--13752285	9	4.0	9	92	0	54	50	13	11	25	1.75
13752247--13752284	18	2.1	18	95	0	67	50	13	10	26	1.73
13753312--13753350	16	2.4	16	87	8	53	20	2	2	74	1.06
13755176--13755218	22	2.0	22	85	0	59	32	13	16	37	1.88
13755305--13755337	17	1.9	17	93	0	57	39	12	15	33	1.84
13755773--13755811	20	1.9	20	84	5	51	46	5	2	46	1.38
13756269--13756343	26	2.9	26	82	7	98	40	21	14	24	1.90
13756816--13756850	16	2.2	16	90	10	54	25	17	5	51	1.67
13760002--13760080	19	4.3	19	85	3	108	37	22	1	37	1.63
13760297--13760425	45	2.9	45	82	0	132	23	29	22	24	1.99
13761311--13761340	14	2.1	14	93	0	51	46	30	0	23	1.52
13761730--13761757	5	5.6	5	100	0	56	60	17	0	21	1.36
13761913--13761977	32	2.0	32	84	0	85	29	18	15	36	1.91
13762264--13762293	2	15.0	2	100	0	60	50	0	50	0	1.00
13766407--13766505	37	2.6	37	78	15	94	31	18	21	29	1.97
13773251--13773287	18	2.1	18	89	0	56	43	18	24	13	1.86
13774344--13774371	13	2.2	13	100	0	56	53	7	7	32	1.55
13780914--13780939	12	2.2	12	100	0	52	42	15	7	34	1.75
13783079--13783113	18	1.9	18	88	0	52	62	0	14	22	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13785422--13785462	19	2.0	21	86	9	59	48	2	2	46	1.28
13785425--13785497	28	2.5	28	82	8	83	52	1	2	43	1.24
13801636--13801924	157	1.8	156	87	0	407	23	20	23	31	1.98
13803090--13803133	15	2.8	16	82	3	54	50	9	4	36	1.55
13821590--13821625	12	3.2	12	85	14	51	61	0	38	0	0.96
13822708--13822738	16	1.9	16	93	0	53	77	0	22	0	0.77
13826112--13826136	12	2.1	12	100	0	50	40	16	8	36	1.77
13827604--13827637	7	4.9	7	86	13	52	0	14	0	85	0.60
13853719--13853760	21	2.0	20	82	13	50	47	2	0	50	1.14
13855120--13855151	15	2.2	14	94	5	55	43	9	28	18	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135