genome.fa.s2.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  60  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17638504--17638605	26	3.9	26	76	5	98	30	27	18	23	1.98
17642908--17643011	26	4.0	26	83	5	102	27	23	23	25	2.00
17643929--17643962	17	2.0	17	100	0	68	52	11	17	17	1.73
17660434--17660496	33	1.9	33	96	0	117	38	15	3	42	1.63
17668843--17670212	685	2.0	685	99	0	2695	41	21	14	23	1.88
17671319--17671381	24	2.6	24	87	0	90	25	14	9	50	1.72
17693542--17693646	43	2.4	43	87	0	138	24	28	27	19	1.98
17693648--17694255	86	7.1	86	77	4	557	22	33	22	21	1.98
17693975--17694470	215	2.3	215	83	4	601	22	33	22	20	1.97
17693648--17694298	258	2.5	257	78	5	670	22	33	23	21	1.98
17694248--17694638	172	2.3	172	82	1	471	20	34	22	22	1.97
17693935--17694894	43	22.3	43	67	10	415	22	32	23	20	1.98
17700012--17701287	43	29.9	43	68	10	371	22	31	24	21	1.98
17700208--17700362	78	2.0	78	83	2	195	21	31	26	20	1.98
17700172--17700488	121	2.5	124	81	7	340	21	32	24	21	1.98
17700012--17700448	164	2.6	164	81	5	441	22	32	25	19	1.97
17700572--17701042	86	5.5	85	80	4	473	20	32	24	22	1.98
17700341--17700733	215	1.8	215	82	3	513	21	32	22	23	1.98
17700295--17700763	215	2.2	214	78	3	512	22	31	23	22	1.98
17700559--17701042	172	2.8	171	78	6	521	20	32	23	22	1.98
17700917--17701194	128	2.2	129	81	5	314	23	31	25	20	1.98
17701943--17702677	43	16.9	42	64	15	199	20	31	23	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17701926--17703177	86	14.3	86	70	10	579	20	31	23	23	1.98
17702359--17702460	53	1.9	53	95	0	186	22	28	23	25	1.99
17702273--17702675	139	3.0	139	78	6	326	21	30	23	24	1.99
17702721--17702823	53	1.9	53	84	3	136	20	29	27	23	1.99
17702619--17702906	139	2.1	139	81	5	339	21	30	23	23	1.99
17702224--17703128	354	2.6	353	78	3	857	20	31	23	24	1.98
17702783--17703031	129	1.9	129	81	1	302	21	30	23	24	1.99
17703991--17704021	12	2.6	12	100	0	62	22	25	6	45	1.76
17705629--17706617	43	23.4	43	78	4	873	22	29	27	19	1.98
17705868--17705939	35	2.1	35	89	5	110	20	31	26	20	1.98
17706290--17706361	35	2.1	35	86	0	99	19	34	25	20	1.96
17707334--17707469	43	3.2	43	69	14	118	22	30	23	24	1.99
17707250--17708091	86	9.8	86	76	5	673	21	30	23	24	1.99
17707708--17707813	43	2.5	44	83	6	128	24	26	28	20	1.99
17707710--17707919	43	4.9	42	70	9	109	20	28	26	25	1.99
17708445--17708469	3	8.3	3	100	0	50	64	0	0	36	0.94
17713153--17713238	42	2.0	42	95	0	154	33	19	22	24	1.97
17713249--17713849	43	14.3	43	76	6	440	25	31	23	20	1.98
17713266--17713653	85	4.5	84	78	6	325	25	30	23	20	1.99
17713252--17713669	128	3.3	129	76	7	395	25	30	22	21	1.99
17714529--17714667	43	3.2	42	76	4	161	21	28	27	22	1.99
17714552--17714830	43	6.5	43	64	13	117	24	31	23	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17714618--17714889	86	3.2	86	81	4	300	22	29	22	25	1.99
17715424--17715515	47	2.0	46	95	2	166	40	11	10	36	1.77
17719485--17719518	18	1.9	17	94	5	59	32	29	20	17	1.96
17725849--17726411	43	13.1	43	78	1	439	23	28	25	22	1.99
17725849--17726406	129	4.3	129	77	2	507	23	28	25	22	1.99
17727425--17728087	43	15.4	43	66	14	224	23	31	21	22	1.98
17727457--17729352	172	10.8	171	72	11	1064	22	30	21	24	1.99
17727455--17729352	86	21.6	86	72	10	883	22	30	21	24	1.99
17727854--17728190	43	7.8	43	67	12	145	22	31	21	24	1.98
17728133--17728242	53	2.1	53	89	3	168	20	32	21	25	1.97
17728414--17728891	43	11.1	43	69	11	201	22	30	23	24	1.99
17729051--17729221	53	3.2	52	78	10	170	19	28	22	29	1.98
17729451--17729494	21	2.2	20	92	8	72	63	2	0	34	1.07
17738000--17738047	24	2.0	24	84	12	62	70	6	8	14	1.31
17754107--17754159	17	2.9	17	81	13	61	39	1	18	39	1.62
17754125--17754168	20	2.2	20	87	0	61	43	2	22	31	1.66
17754902--17754944	20	2.2	19	87	4	59	34	2	27	34	1.70
17755013--17755172	23	6.8	22	71	14	106	14	24	18	42	1.88
17755013--17755136	23	5.3	23	78	9	119	12	24	20	42	1.87
17757393--17757964	214	2.6	213	82	5	693	40	11	11	36	1.79
17765679--17765717	17	2.3	17	90	0	60	15	12	25	46	1.81
17765707--17765794	41	2.1	41	95	0	158	28	6	30	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17770976--17771051	39	1.9	40	89	2	118	28	15	23	31	1.96
17774698--17774726	12	2.3	13	94	5	51	48	0	0	51	1.00
17786158--17786190	11	2.8	12	86	9	50	15	15	15	54	1.71
17786275--17786350	12	6.4	12	67	13	50	28	14	21	35	1.92
17786354--17786411	30	2.1	28	84	12	75	53	15	10	20	1.71
17792483--17792515	17	1.9	17	93	0	57	15	15	48	21	1.81
17792961--17793005	21	2.3	20	79	20	51	35	13	8	42	1.75
17793640--17793721	25	3.4	24	91	3	121	41	20	25	12	1.87
17793640--17793732	25	3.8	24	81	16	102	40	20	24	13	1.89
17796771--17796816	5	8.8	5	86	9	65	19	2	2	76	1.00
17796772--17796821	16	3.1	15	83	11	64	22	2	2	74	1.03
17796978--17797159	4	45.8	4	65	22	73	22	4	3	69	1.21
17796957--17797017	25	2.4	25	79	12	63	22	1	4	70	1.15
17796971--17797082	25	4.5	25	69	22	83	23	2	2	71	1.12
17797040--17797095	24	2.3	24	90	9	87	21	1	3	73	1.08
17796978--17797139	61	2.6	60	81	12	166	22	4	3	69	1.20
17797068--17797130	33	1.9	33	83	6	83	20	6	3	69	1.24
17797647--17797695	14	3.5	14	89	8	73	65	16	18	0	1.28
17798342--17798393	27	2.0	26	85	11	70	17	15	0	67	1.24
17802835--17802898	8	7.6	8	77	11	58	79	0	20	0	0.73
17802834--17802899	33	1.9	35	87	6	100	78	0	21	0	0.75
17802833--17802883	7	7.3	7	78	8	59	80	0	19	0	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17803840--17804134	49	6.0	49	82	4	301	36	14	26	22	1.92
17804260--17805173	93	9.5	97	74	10	600	34	16	23	25	1.95
17804245--17805160	192	4.8	192	78	5	885	34	16	23	25	1.95
17805797--17805822	3	8.7	3	100	0	52	0	34	0	65	0.93
17806924--17806994	12	5.8	12	74	14	56	21	4	2	71	1.15
17807369--17807585	111	2.0	109	88	5	321	32	13	13	40	1.84
17809826--17809883	27	2.2	25	88	11	82	79	1	17	1	0.90
17809828--17809882	19	2.8	19	83	10	76	80	1	16	1	0.90
17810894--17811029	49	2.8	49	77	0	155	37	14	22	25	1.92
17810991--17811108	49	2.4	49	78	2	121	36	16	22	25	1.94
17810897--17811108	98	2.2	97	79	5	212	36	15	22	25	1.94
17811203--17812380	93	12.6	93	78	6	902	34	16	22	25	1.95
17811288--17811445	50	3.2	49	66	18	128	30	13	29	26	1.94
17811222--17812380	372	3.1	369	81	6	1119	34	16	22	25	1.96
17812881--17812931	7	7.3	7	76	24	54	68	15	15	0	1.21
17812881--17812931	14	3.7	13	84	7	66	68	15	15	0	1.21
17813045--17813093	23	2.1	23	85	7	64	24	2	2	71	1.07
17828801--17831482	670	4.0	670	99	0	5319	41	8	10	38	1.71
17836829--17836884	21	2.6	22	80	8	62	37	23	12	26	1.90
17839496--17839537	18	2.3	18	95	0	75	19	23	23	33	1.97
17842165--17842223	29	2.0	29	83	6	75	16	5	20	57	1.58
17844204--17844233	12	2.4	13	94	5	53	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17844832--17844876	19	2.5	18	85	7	56	62	11	11	15	1.55
17853327--17853460	26	5.2	26	91	0	205	42	19	22	15	1.89
17858256--17858397	24	5.8	24	70	12	117	19	28	16	34	1.94
17858247--17858601	50	7.2	50	82	8	397	21	26	16	35	1.94
17858281--17858416	26	5.4	26	65	10	93	21	27	15	36	1.93
17858376--17858457	41	2.0	41	97	0	155	23	26	15	34	1.95
17858326--17858495	91	1.9	91	91	0	277	24	27	14	34	1.94
17858420--17858552	26	5.3	25	67	13	85	21	27	15	36	1.93
17858276--17858555	141	2.0	141	88	1	418	21	27	15	35	1.94
17861338--17861372	14	2.4	15	90	4	54	71	2	11	14	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135