genome.fa.s2.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  97  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30194359--30194408	26	1.9	26	83	0	64	54	4	6	36	1.44
30195705--30195994	46	6.3	46	80	4	307	30	21	21	26	1.98
30195705--30195994	92	3.2	92	83	0	355	30	21	21	26	1.98
30195705--30195994	138	2.1	138	83	2	350	30	21	21	26	1.98
30197000--30197052	26	2.0	26	82	7	63	45	7	1	45	1.42
30198865--30199041	24	7.4	24	79	0	192	20	25	18	35	1.96
30198865--30199039	72	2.4	72	90	0	269	21	25	18	35	1.95
30199741--30199783	3	14.3	3	100	0	86	32	0	0	67	0.91
30202410--30203016	302	2.0	302	99	0	1196	33	19	14	31	1.92
30206201--30206440	72	3.3	72	88	0	345	20	25	17	36	1.94
30206204--30206440	24	9.9	24	81	0	276	20	25	17	36	1.94
30207015--30207053	19	2.1	19	100	0	78	30	12	10	46	1.75
30207175--30207205	3	10.3	3	100	0	62	32	0	0	67	0.91
30209455--30209502	20	2.4	19	76	10	51	45	2	2	50	1.25
30209892--30209948	18	3.2	18	83	11	66	47	1	0	50	1.11
30209901--30209948	17	2.8	17	81	12	55	47	2	0	50	1.12
30210547--30210575	8	3.6	8	100	0	58	13	0	0	86	0.58
30212220--30212266	15	3.2	15	80	17	62	38	2	2	57	1.23
30212465--30212511	18	2.6	19	80	10	62	51	0	0	48	1.00
30213889--30213941	20	2.6	20	79	11	54	66	5	0	28	1.15
30213915--30213970	29	2.0	28	86	10	78	53	1	0	44	1.11
30213913--30214031	19	6.2	19	69	14	57	55	1	0	42	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30213988--30214033	9	4.7	10	78	13	51	67	2	2	28	1.14
30217595--30217632	16	2.4	16	95	0	67	23	0	0	76	0.79
30224384--30224415	15	2.1	15	94	0	55	25	21	12	40	1.88
30225037--30225137	38	2.6	40	71	10	100	21	19	28	29	1.98
30225844--30225903	31	1.9	31	100	0	120	23	18	18	40	1.92
30233408--30233466	29	2.0	29	100	0	118	44	0	42	13	1.44
30233462--30233532	3	23.3	3	88	8	108	67	1	30	0	0.99
30247714--30247851	70	2.0	70	89	0	213	31	22	21	25	1.98
30252575--30252616	21	2.0	22	85	4	59	64	4	19	11	1.44
30271700--30271740	22	1.9	21	85	5	55	63	7	7	21	1.45
30274371--30274399	14	2.1	14	100	0	58	0	20	0	79	0.74
30288164--30288305	38	3.8	37	76	6	108	33	27	12	26	1.92
30289177--30289207	16	1.9	16	93	0	53	22	16	0	61	1.34
30291346--30291386	22	1.9	21	85	5	55	63	7	7	21	1.45
30302712--30302745	15	2.4	14	90	5	50	70	0	11	17	1.16
30302928--30302957	15	1.9	16	93	6	53	20	16	13	50	1.78
30315851--30315879	14	2.1	14	100	0	58	34	31	0	34	1.58
30324444--30324481	17	2.2	18	85	4	51	18	2	5	73	1.14
30331824--30332079	45	5.7	45	73	8	180	28	20	14	36	1.92
30331838--30332084	135	1.8	135	82	3	318	29	20	13	36	1.91
30335899--30335932	14	2.4	14	90	0	50	38	5	5	50	1.51
30343870--30344112	52	4.7	52	88	0	344	35	25	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30347388--30347414	2	13.5	2	100	0	54	51	0	0	48	1.00
30348879--30349117	52	4.6	52	94	0	399	34	25	14	25	1.94
30353478--30353553	37	2.0	38	94	2	136	42	7	6	43	1.60
30353779--30353803	7	3.6	7	100	0	50	32	0	0	68	0.90
30356640--30356679	21	1.9	21	94	0	71	22	10	12	55	1.67
30356818--30356863	21	2.1	23	84	8	60	43	8	4	43	1.55
30362011--30362053	22	2.0	22	85	0	59	34	20	23	20	1.96
30363246--30363780	268	2.0	269	91	1	876	33	16	23	26	1.95
30366094--30366145	19	2.8	18	80	8	50	3	9	19	67	1.35
30370546--30370627	17	4.7	17	82	8	94	37	2	7	52	1.43
30370577--30370633	23	2.5	24	80	8	64	45	0	5	49	1.24
30370577--30370633	11	4.9	12	78	8	64	45	0	5	49	1.24
30370577--30370633	6	9.8	6	83	7	64	45	0	5	49	1.24
30371317--30371350	15	2.3	15	89	0	50	58	5	0	35	1.22
30372458--30372519	29	2.1	29	82	5	72	35	25	1	37	1.66
30372482--30372797	59	5.4	59	77	6	236	33	22	2	41	1.67
30372575--30372886	29	10.7	28	71	16	181	36	24	1	37	1.64
30372457--30372764	59	5.2	59	77	11	260	34	21	2	42	1.65
30372457--30372770	117	2.7	115	81	8	323	34	21	2	41	1.66
30372691--30372899	59	3.6	57	81	5	240	38	25	2	33	1.71
30372691--30372885	58	3.3	58	82	5	241	37	26	2	33	1.68
30372749--30372916	28	5.8	29	71	18	100	35	29	4	31	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30373520--30373693	86	2.0	86	95	0	312	30	17	20	32	1.95
30378690--30378757	24	2.8	23	74	12	66	77	2	13	5	1.06
30380005--30380654	98	6.7	98	85	2	765	40	24	24	11	1.87
30380003--30380653	195	3.3	192	85	3	815	39	24	24	11	1.88
30379987--30380677	48	14.2	48	77	5	643	40	24	24	10	1.87
30380804--30380999	101	1.9	101	87	0	284	33	16	19	30	1.94
30381183--30381313	38	3.4	39	69	16	112	26	32	16	24	1.96
30381054--30381325	77	3.5	76	84	6	325	25	30	18	25	1.98
30381202--30381393	39	4.9	38	68	15	120	26	31	17	24	1.97
30381278--30381406	39	3.2	39	70	8	105	26	30	19	24	1.98
30381945--30382026	17	4.7	17	82	8	94	37	2	7	52	1.43
30381976--30382027	11	4.5	12	78	9	63	44	0	5	50	1.26
30381976--30382027	6	9.0	6	83	8	63	44	0	5	50	1.26
30382715--30382769	15	3.8	15	83	9	60	58	5	1	34	1.32
30382729--30382759	13	2.5	13	94	5	55	61	0	0	38	0.96
30383841--30384225	29	13.1	28	70	15	163	34	24	4	37	1.75
30383854--30384196	59	5.8	57	80	9	259	34	22	4	38	1.73
30383876--30384096	117	1.9	117	87	3	329	35	21	2	40	1.67
30384001--30384225	59	3.8	59	82	2	238	33	24	4	36	1.77
30399194--30399221	2	14.0	2	100	0	56	50	0	50	0	1.00
30406809--30406871	33	1.9	33	93	0	108	47	15	7	28	1.74
30409070--30409140	29	2.5	28	83	4	88	42	0	22	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30409070--30409140	28	2.4	29	86	4	90	42	0	22	35	1.54
30409095--30409376	59	4.8	59	81	5	297	36	1	28	34	1.68
30409166--30409404	29	8.2	29	70	18	131	33	2	28	35	1.71
30409122--30409229	30	3.7	29	69	18	80	35	2	28	33	1.72
30409070--30409374	117	2.6	112	79	9	333	37	1	27	33	1.67
30409275--30409448	29	5.9	28	79	11	145	33	2	25	37	1.71
30409273--30409404	59	2.3	59	87	1	185	34	1	26	37	1.66
30410553--30410605	22	2.4	22	81	6	63	47	7	1	43	1.42
30411384--30411420	17	2.2	17	90	0	56	37	0	2	59	1.12
30430565--30430674	58	1.9	58	83	7	143	19	10	14	56	1.66
30441100--30441163	30	2.2	29	83	8	76	45	9	10	34	1.72
30442011--30442044	17	1.9	18	94	5	61	23	5	5	64	1.38
30442397--30442462	23	2.8	24	81	6	82	6	25	21	46	1.74
30442442--30442477	18	2.0	18	88	0	54	8	30	25	36	1.85
30445593--30445621	3	9.7	3	100	0	58	34	31	0	34	1.58
30456538--30456658	23	5.2	23	82	11	156	11	25	23	39	1.88
30456538--30456658	48	2.6	46	87	7	172	11	25	23	39	1.88
30456623--30456697	39	1.9	39	89	5	116	12	24	21	42	1.86
30456657--30456750	23	4.0	23	78	16	95	11	26	19	42	1.85
30459013--30459144	59	2.2	60	90	4	205	50	0	0	48	1.11
30459013--30459144	29	4.4	29	91	2	201	50	0	0	48	1.11
30459420--30459469	25	2.0	25	100	0	100	32	12	24	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30460259--30460309	24	2.1	24	92	0	84	60	9	3	25	1.45
30460298--30460347	4	12.8	4	79	12	50	72	4	2	22	1.12
30460277--30460347	31	2.2	32	95	2	126	67	7	2	22	1.28
30461839--30462071	101	2.3	101	80	5	267	25	21	18	33	1.96
30469394--30469429	18	1.9	19	88	5	56	36	5	0	58	1.22
30481123--30481267	50	2.9	49	82	3	146	34	20	30	15	1.93
30481555--30481932	39	9.7	38	70	14	198	24	31	18	25	1.98
30481840--30481955	39	3.0	39	71	22	107	22	31	22	23	1.98
30481516--30482012	78	6.4	78	82	0	528	24	30	18	25	1.98
30481535--30481966	156	2.8	155	86	2	596	24	31	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135