genome.fa.s2.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  132  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40570596--40570634	8	4.9	8	81	12	53	61	0	0	38	0.96
40571864--40572104	126	1.9	123	84	4	313	42	12	15	29	1.83
40577895--40577930	2	18.0	2	100	0	72	50	0	0	50	1.00
40607188--40607255	22	3.1	22	100	0	136	35	26	8	29	1.87
40611389--40611426	16	2.4	16	86	4	51	57	0	5	36	1.21
40617307--40617354	23	2.0	24	84	4	62	58	4	2	35	1.29
40617375--40617432	31	1.9	30	82	10	73	62	0	0	37	0.96
40619520--40619554	18	1.9	18	88	0	52	54	8	2	34	1.46
40623545--40623575	15	2.0	16	93	6	55	19	0	16	64	1.29
40626427--40626471	18	2.5	18	78	7	56	68	4	6	20	1.29
40629312--40629442	58	2.3	58	80	6	149	45	0	3	49	1.25
40638686--40638769	4	20.2	4	78	11	80	20	3	29	46	1.67
40638958--40639003	2	23.0	2	90	0	74	45	50	4	0	1.21
40641025--40641053	2	14.5	2	100	0	58	48	0	0	51	1.00
40645215--40645239	1	25.0	1	100	0	50	100	0	0	0	0.00
40645239--40645281	2	21.5	2	100	0	86	51	0	0	48	1.00
40648399--40648433	17	2.0	18	88	5	54	25	31	14	28	1.95
40648612--40648638	5	5.4	5	100	0	54	18	40	0	40	1.51
40649318--40649356	20	1.9	21	89	5	62	53	5	7	33	1.51
40650117--40650188	28	2.4	30	81	9	76	52	5	0	41	1.24
40650899--40651054	77	2.0	77	98	0	303	36	7	14	41	1.75
40658931--40659274	191	1.8	191	90	0	562	43	22	9	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40660706--40660735	2	15.0	2	100	0	60	50	0	0	50	1.00
40663570--40663642	24	3.1	23	71	13	67	39	2	1	56	1.22
40681598--40681639	18	2.3	18	84	8	50	28	0	14	57	1.38
40682463--40682502	19	2.0	20	86	13	57	20	7	0	72	1.08
40701409--40701555	52	3.1	52	75	22	192	49	4	11	34	1.60
40701434--40701519	40	2.2	40	97	2	165	47	4	11	36	1.61
40705658--40705904	121	2.0	121	93	0	422	43	19	15	21	1.87
40722095--40722131	6	6.2	6	96	0	56	43	0	0	56	0.99
40744861--40744903	20	2.2	19	87	8	59	48	13	6	30	1.69
40744928--40744983	26	2.2	26	96	0	103	21	7	33	37	1.81
40745498--40745527	13	2.3	13	94	0	51	90	3	6	0	0.56
40748616--40748660	24	1.9	23	86	4	63	53	2	0	44	1.13
40751948--40751992	20	2.3	19	85	11	63	26	8	8	55	1.60
40751947--40751993	21	2.3	20	85	3	67	25	8	8	57	1.57
40752025--40752060	17	2.1	17	89	0	54	13	8	2	75	1.15
40755508--40755632	37	3.4	37	87	2	153	36	7	21	35	1.81
40762052--40763278	409	3.0	409	99	0	2436	40	11	17	30	1.86
40779717--40779761	21	2.1	21	87	0	63	4	51	15	28	1.63
40791105--40791129	12	2.1	12	100	0	50	48	8	0	44	1.32
40793734--40793772	21	1.9	20	94	5	69	33	10	25	30	1.89
40793890--40793918	8	3.6	8	100	0	58	24	0	0	75	0.80
40793929--40794025	32	3.1	30	75	23	92	58	0	1	40	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40793945--40794025	21	3.8	20	82	9	90	60	0	1	38	1.05
40793945--40794037	23	4.2	22	74	15	84	61	0	2	36	1.08
40793949--40794012	9	6.8	9	79	13	51	59	0	1	39	1.07
40794476--40794500	13	1.9	13	100	0	50	56	8	8	28	1.57
40796143--40796201	28	2.1	28	81	6	66	64	6	0	28	1.19
40796628--40796663	6	6.3	6	87	12	58	50	0	0	50	1.00
40798894--40798918	1	25.0	1	100	0	50	0	100	0	0	0.00
40802422--40802937	256	2.0	257	93	1	892	33	13	14	37	1.86
40803365--40803390	9	2.9	9	100	0	52	42	23	11	23	1.86
40809251--40809309	31	1.9	31	100	0	118	27	11	6	54	1.62
40829184--40829243	31	1.9	31	96	0	111	20	25	31	23	1.98
40838127--40838155	5	6.0	5	92	8	51	41	0	0	58	0.98
40838127--40838155	14	2.0	15	93	6	51	41	0	0	58	0.98
40838135--40838183	15	3.3	15	81	13	57	36	4	6	53	1.45
40838148--40838183	16	2.4	14	86	13	54	36	5	8	50	1.56
40849580--40849649	3	23.3	3	100	0	140	67	0	0	32	0.91
40851810--40851898	11	7.7	11	71	14	54	28	6	4	60	1.42
40852037--40852072	13	2.8	13	95	4	65	69	0	0	30	0.89
40859929--40859964	3	12.0	3	93	0	63	66	2	0	30	1.06
40860428--40860495	28	2.4	29	87	2	102	26	14	17	41	1.88
40861549--40861600	27	1.9	27	84	0	68	34	7	7	50	1.60
40863386--40863438	28	2.0	26	88	7	79	33	3	0	62	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40873755--40873876	65	1.9	64	84	3	165	39	9	12	39	1.74
40876991--40877017	6	4.5	6	100	0	54	18	18	0	62	1.32
40894469--40894518	16	3.1	16	78	16	50	56	4	4	36	1.37
40902663--40902689	6	4.5	6	100	0	54	48	18	0	33	1.49
40903562--40903612	25	1.9	28	84	11	72	27	13	21	37	1.91
40915015--40915062	20	2.5	20	83	12	64	54	4	6	35	1.45
40916896--40916925	15	1.9	16	93	6	53	70	0	3	26	1.03
40917682--40917763	25	3.3	23	80	16	76	60	9	6	23	1.50
40917681--40917764	26	3.3	25	77	17	84	61	9	5	22	1.48
40917666--40917776	27	4.2	26	75	17	86	56	13	5	24	1.58
40923296--40923336	2	20.5	2	89	0	64	46	2	2	48	1.28
40933018--40933043	7	3.7	7	100	0	52	11	26	30	30	1.92
40933376--40933413	19	2.0	20	89	5	60	28	2	2	65	1.19
40933367--40933428	10	6.2	10	76	16	58	27	1	3	67	1.15
40933367--40933438	29	2.5	28	78	12	83	27	1	2	68	1.12
40944361--40944516	82	1.9	81	88	1	231	34	27	22	15	1.94
40949704--40949770	16	4.2	15	73	17	55	59	10	0	29	1.31
40950942--40951231	151	1.9	150	86	4	413	44	19	8	27	1.79
40953019--40953058	17	2.3	18	86	4	55	40	2	2	55	1.27
40960122--40960146	12	2.1	12	100	0	50	52	16	8	24	1.70
40966803--40966847	22	2.0	22	100	0	90	51	22	8	17	1.73
40967151--40967216	29	2.2	30	83	2	89	42	16	6	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40967661--40967698	2	20.5	2	84	15	55	44	0	0	55	0.99
40967791--40967828	6	6.7	6	82	11	53	52	13	0	34	1.40
40967791--40967841	12	4.6	11	83	11	52	54	15	0	29	1.41
40968948--40968990	23	1.9	22	85	4	59	46	6	4	41	1.51
40971214--40971267	18	2.8	19	81	8	56	33	5	5	55	1.46
40971557--40971676	30	4.2	29	75	13	113	55	10	6	27	1.59
40971617--40971667	26	2.0	24	85	7	66	60	9	5	23	1.50
40982920--40982959	17	2.4	18	80	12	50	32	0	2	65	1.06
40983038--40983129	33	3.1	28	77	16	80	58	0	1	40	1.05
40983056--40983129	33	2.3	33	81	11	82	60	0	0	39	0.97
40993854--40993888	16	2.2	16	89	0	52	74	2	2	20	1.08
40993850--40993891	16	2.8	15	82	10	50	71	2	2	23	1.10
40993812--40994145	165	2.0	165	100	0	668	53	10	7	28	1.62
40994019--40994053	16	2.2	16	89	0	52	74	2	2	20	1.08
40994015--40994056	16	2.8	15	82	10	50	71	2	2	23	1.10
40994277--40994315	17	2.3	18	87	12	57	33	0	0	66	0.92
40994297--40994366	30	2.3	29	77	15	72	51	1	4	42	1.30
41008369--41008399	16	2.0	16	93	6	55	45	6	0	48	1.28
41013096--41013156	31	2.0	31	86	0	86	47	8	9	34	1.66
41016406--41016514	31	3.5	31	81	2	112	19	12	19	48	1.80
41023409--41023444	17	2.1	18	89	5	56	77	0	2	19	0.88
41028425--41028450	3	8.7	3	100	0	52	34	34	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41033731--41033790	29	2.1	29	84	6	77	60	15	0	25	1.35
41041332--41041359	14	2.0	14	100	0	56	35	0	0	64	0.94
41043043--41043151	57	1.9	57	98	0	209	30	21	27	21	1.98
41043185--41043276	36	2.6	35	89	3	130	18	15	32	33	1.92
41048763--41048796	15	2.3	15	89	0	50	47	14	2	35	1.60
41050538--41050575	20	2.0	19	90	10	60	34	23	10	31	1.89
41051524--41052633	101	11.0	100	75	7	818	32	21	17	27	1.96
41056196--41056233	15	2.4	17	86	8	53	34	5	0	60	1.19
41056572--41056599	2	14.0	2	100	0	56	50	0	0	50	1.00
41060450--41060474	8	3.1	8	100	0	50	40	12	24	24	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135