genome.fa.s2.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032246.1 Gossypioides kirkii chromosome KI_03
Parameters: 2 7 7 80 10 50 1000
Length:  42061019

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  62  of  135  ( 16151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18143028--18143090	11	5.3	12	80	16	69	22	1	1	74	0.99
18143022--18143083	4	15.8	4	72	21	51	22	1	1	74	1.00
18143022--18143092	27	2.6	28	82	10	85	22	1	1	74	0.97
18143050--18143093	20	2.2	21	80	15	58	22	0	0	77	0.77
18143148--18143172	2	12.5	2	100	0	50	48	0	0	52	1.00
18143214--18143260	22	2.0	24	88	8	71	25	4	2	68	1.19
18148803--18148848	22	2.1	22	100	0	92	50	4	8	36	1.53
18158780--18158821	21	2.0	21	90	0	66	38	19	11	30	1.88
18159587--18159618	16	2.0	16	93	0	55	37	18	21	21	1.94
18167225--18167347	57	2.1	56	84	10	151	27	18	5	47	1.71
18173305--18173390	30	2.9	30	91	1	138	39	4	18	37	1.72
18173283--18173432	30	5.1	29	83	7	126	38	4	20	37	1.71
18173290--18173489	30	6.8	29	80	10	115	38	4	20	37	1.73
18173287--18173486	60	3.4	59	75	8	156	38	5	20	37	1.74
18175261--18176040	38	19.9	38	74	11	583	24	18	26	29	1.98
18175276--18176040	197	3.9	199	78	8	665	25	18	26	29	1.98
18175241--18176040	78	10.2	78	82	6	710	25	18	27	29	1.98
18176232--18176716	49	9.9	49	73	5	264	20	29	15	34	1.93
18176229--18176709	196	2.5	195	84	1	604	20	29	15	34	1.93
18176229--18176744	98	5.3	98	83	0	548	20	28	16	35	1.94
18178563--18178693	65	2.0	68	86	7	189	9	19	9	60	1.56
18182897--18183050	30	5.1	30	78	4	125	38	3	22	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18183421--18183460	16	2.5	16	95	0	71	40	10	10	40	1.72
18183448--18183520	10	7.3	10	74	11	60	41	6	8	43	1.61
18183432--18183519	24	3.6	25	80	6	108	39	7	9	43	1.66
18183418--18183510	14	6.9	14	72	9	77	40	9	8	40	1.69
18183432--18183532	22	4.2	22	74	18	69	41	7	8	41	1.65
18202595--18202792	74	2.7	74	88	1	263	26	18	19	35	1.94
18202657--18202768	40	3.0	39	65	12	99	27	17	18	35	1.94
18202758--18202839	35	2.4	34	81	2	92	24	24	24	26	2.00
18205712--18206614	101	9.0	100	76	6	774	26	18	18	36	1.94
18205712--18206473	50	15.1	50	68	12	290	26	19	18	35	1.95
18205712--18206510	201	4.0	201	84	2	953	26	19	18	35	1.95
18205741--18206614	201	4.3	201	82	4	926	26	18	18	36	1.94
18205796--18206614	401	2.0	402	82	2	1011	26	18	18	36	1.93
18208415--18208585	44	3.9	44	85	1	209	36	9	22	30	1.86
18209062--18209092	14	2.3	14	94	5	55	35	9	25	29	1.88
18228270--18228305	2	18.5	2	94	5	65	52	0	0	47	1.00
18235545--18235586	2	21.5	2	95	4	77	52	0	0	47	1.00
18236418--18236522	37	2.7	38	76	4	95	22	17	26	33	1.96
18241526--18241640	44	2.6	43	82	5	131	35	11	21	31	1.89
18242797--18242872	7	11.1	7	75	10	77	2	18	0	78	0.86
18242795--18242870	27	2.8	28	82	11	104	2	19	0	77	0.88
18249146--18249184	18	2.2	18	85	0	51	12	33	10	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18250063--18250120	26	2.2	27	79	11	66	60	1	6	31	1.33
18251080--18251113	17	1.9	18	88	5	52	61	8	5	23	1.47
18251398--18251426	12	2.3	13	94	5	51	58	6	27	6	1.50
18256251--18256302	25	2.0	26	82	10	63	67	3	1	26	1.18
18256572--18256643	27	2.5	29	82	13	87	70	1	2	25	1.08
18257768--18257806	19	2.0	21	90	10	64	5	10	7	76	1.13
18258061--18258099	14	2.7	15	84	4	53	17	2	41	38	1.64
18263401--18263444	22	2.0	22	91	4	72	45	9	15	29	1.77
18263728--18264148	213	2.0	213	90	0	671	33	25	18	22	1.96
18275296--18275353	27	2.0	29	87	9	84	17	10	12	60	1.58
18275300--18275360	29	2.2	27	82	11	70	16	9	13	60	1.58
18283036--18283073	19	2.0	19	85	10	51	57	0	10	31	1.32
18285480--18285536	29	2.0	29	85	0	78	33	1	7	57	1.36
18285660--18285793	9	14.3	9	72	18	96	22	3	18	55	1.59
18285661--18285812	37	4.2	37	73	23	146	21	3	19	55	1.59
18285754--18285807	12	5.1	11	80	15	53	20	1	16	61	1.44
18285675--18285807	21	6.8	20	70	17	79	20	4	18	57	1.58
18291085--18291133	21	2.3	21	89	0	80	0	34	4	61	1.15
18299157--18299198	22	1.9	22	90	9	68	23	2	26	47	1.64
18301551--18301600	15	3.3	15	83	8	66	40	0	0	60	0.97
18301550--18301611	30	2.0	32	87	6	92	41	0	0	58	0.98
18305279--18305348	33	2.1	33	100	0	140	45	5	14	34	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18305279--18305340	18	3.7	18	77	14	78	43	6	12	37	1.69
18305296--18305349	15	3.3	16	75	14	65	48	3	14	33	1.62
18306437--18306722	41	7.0	41	80	3	308	33	19	29	17	1.95
18311856--18312080	43	5.3	42	83	3	270	25	17	26	30	1.98
18315391--18315447	26	2.2	25	82	11	71	42	0	0	57	0.98
18319997--18320149	58	2.6	58	89	1	234	37	7	18	35	1.80
18321450--18321508	31	1.9	31	89	0	91	47	5	3	44	1.42
18325001--18325105	28	3.7	28	70	18	74	16	16	26	40	1.89
18324978--18325105	58	2.2	58	83	5	161	16	17	28	38	1.91
18327389--18327436	19	2.5	19	86	10	62	52	6	4	37	1.46
18327796--18327845	17	2.9	17	75	24	52	30	2	2	66	1.14
18335166--18335228	32	1.9	33	83	3	83	53	0	26	19	1.45
18341946--18341997	20	2.6	20	87	0	68	34	11	26	26	1.91
18341683--18342291	278	2.2	278	89	1	909	29	14	24	31	1.94
18366726--18366769	18	2.5	17	85	3	52	18	9	13	59	1.60
18371167--18371256	46	2.0	46	81	0	108	41	17	17	23	1.90
18386080--18386115	12	3.2	12	85	14	51	69	0	30	0	0.89
18386470--18386702	118	2.0	118	93	0	394	36	13	18	31	1.90
18391771--18391808	15	2.7	14	84	11	51	15	7	7	68	1.37
18394741--18394802	24	2.5	24	82	15	74	74	0	22	3	0.96
18394743--18394800	30	2.0	29	83	16	75	77	0	20	1	0.86
18402543--18402655	23	4.9	23	76	9	104	43	16	24	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18405156--18405207	16	3.1	17	81	13	54	48	9	0	42	1.36
18408743--18408795	25	2.2	25	93	3	90	26	26	5	41	1.78
18408866--18408993	23	5.5	23	78	7	105	41	16	26	15	1.88
18408866--18408994	46	2.8	46	79	4	125	41	16	26	16	1.89
18408903--18408994	23	4.0	23	86	0	112	40	17	26	16	1.90
18408854--18409009	23	6.7	23	72	18	67	41	16	27	14	1.87
18419716--18419954	52	4.6	52	82	4	248	32	23	16	28	1.96
18419716--18419954	105	2.3	104	83	2	282	32	23	16	28	1.96
18426829--18427014	52	3.6	52	83	2	230	31	24	16	26	1.96
18429106--18429204	28	3.5	28	79	5	119	20	18	27	34	1.95
18429093--18429269	56	3.2	55	84	4	210	22	19	23	35	1.96
18429129--18429227	28	3.5	28	75	15	80	20	19	28	32	1.97
18434343--18434381	19	2.1	19	85	0	51	12	15	15	56	1.68
18437502--18437535	17	2.1	17	88	5	52	35	0	14	50	1.44
18442096--18442134	18	2.2	18	90	0	60	33	25	20	20	1.97
18446272--18446297	10	2.6	10	100	0	52	42	15	0	42	1.47
18447283--18447367	41	2.1	41	88	0	125	31	15	27	25	1.95
18447765--18447817	21	2.5	22	75	9	65	71	0	28	0	0.86
18447765--18447821	15	3.9	16	78	19	63	70	0	29	0	0.88
18471904--18471931	3	9.3	3	100	0	56	67	0	0	32	0.91
18479608--18479640	11	3.1	11	86	4	50	3	15	0	81	0.80
18479599--18479640	17	2.5	17	81	14	59	2	14	0	83	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18480774--18480810	12	3.1	12	88	0	56	13	29	18	37	1.90
18480791--18480851	18	3.4	18	81	0	77	14	26	8	50	1.71
18481716--18481781	7	9.6	7	74	23	52	68	0	3	28	1.05
18481698--18481780	42	2.0	41	81	6	96	63	0	3	32	1.11
18481721--18481783	22	3.2	19	81	16	74	65	0	3	31	1.09
18481708--18481783	18	3.8	20	74	20	70	64	0	3	31	1.12
18482446--18482604	87	1.8	87	89	4	250	50	3	3	42	1.36
18482760--18482801	19	2.2	19	83	8	50	52	0	0	47	1.00
18482541--18482817	106	2.6	106	76	13	284	49	4	5	40	1.45
18485188--18485282	48	2.0	48	100	0	190	18	21	22	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135